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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0036700 |
| Transcript ID | LotjaGi3g1v0036700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Epidermal patterning factor; TAIR: AT1G34245.1 Putative membrane lipoprotein; Swiss-Prot: sp|Q8LC53|EPF2_ARATH Protein EPIDERMAL PATTERNING FACTOR 2; TrEMBL-Plants: tr|C6T619|C6T619_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0036700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3982904..3984360) extracted from Lotus japonicus Gifu genome v1.2.
AAATTACTCTCCAAATTACTTCTCCACCTTCATACTTCTTGGCACTAGAATGCATTTCCTCTAGTAATGAAAATTGATCC CAAGTTACTTCAGTTTATTTAGTTTTAGGAAATATGATGATTTTCTCCTCAAAGGCTTACAAGGTTTTCCTGCTTGTGTC TTTCTCCATGGTACTCTCTACTAGTTGGAGCCTTGAGGTGATCCCGAATCATGGTATGTAATATCATTATTTACTTCTAT GTCCCATTGTCCCATAACTTGCATAAGTAAATGTCTCAATGAATGAACAATGTATGTAAAGCTTGATTAATAGCCCTATT ATAATTTGAATTTTACTCTATACTAATGACGGCTATATATACTTTTAGAATTGATATAACAAGTAACAGAGTTTAGATTT ATTTCAAGTCTTTTAAATGTAAAACCACCGCTCGAAGAGCTAGTCCTACCATGCTATGAATGTTCTGACTCTAAAAGAAT TGCTTTCGTGGAGAATACTTGTATTAAAAAAAAATAGTGGCCCCGGAAAATAGTCAAAGAGATAATCTTTCTACCTAACA ATCAATATTGTTTATTCACCAAAAAAGAAAAAAAAACTATCGATGTTGTTGCTTAAAGGGCTTTTATTGTAGGGGATTTA CATGTGCTTTTATTTTTAATTTCCATCCAGTTAAGTTGAACAACTTGCAAGAAGAGAAAGCTGCCACTAACGAGGTTTGT TTCCAATAATTCAATCTTTTGTATGGTATCTGAAGTCTAAACTCATTTTAGTGTTCTTTAAAAGAGATTAGTTAAACATG ATACTCAGAACAAAAACATTTAATGATTACTAACATGGTGTAGACGTTTAGAGTGATATACCAAGAGAAAAAGATGTGTT TGATATAATATGCAATGTGATGTGATAAGAAGAAAGAGATAAAGAGAAAAGGTGATACATGTAGATGTTGTTACAATTTC AGTGTACATGAATTGGGTCTATACTCATAATATGTAATGCTTATTTACCTCCTTGGTATATTTTGTAGGAAGGAGAAAAG AAAGACATGGGAATGCAGCTCTACCGAACAGGTTCTACATTGCCGGATTGTTCACACGCGTGTGGATCATGCTTTCCCTG CAAGAGGGTGATAGTGAGCTACAAGTGCTTGATTGCAGAGTCATGCCCTGAAGTTTACAGGTGCATGTGTAAAGGGAAAT ACTACCATGTACCTTCCAATTGAAGAAGATTTGTGATGGACATTTTGTCAATTTAGAATTTCAGATTAGCTTAGATTGGT TAGACACGAGTTTTGCCTCTGTTAAAGCTATCACAACTTTGTGTGTTTGGATTAAAATTTAGGAAGTTGAGTTTATGTCA ATTTGAGTTTAGAAAACTGAGTTTGGTTAAAAGTAGTTTATTGTAATGTGATTTATGTTTAAATGTTTTTTATTCTAAAG TAGTTTTCCAAAATGAA
CDS sequence (LotjaGi3g1v0036700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATTTTCTCCTCAAAGGCTTACAAGGTTTTCCTGCTTGTGTCTTTCTCCATGGTACTCTCTACTAGTTGGAGCCT TGAGGTGATCCCGAATCATGTTAAGTTGAACAACTTGCAAGAAGAGAAAGCTGCCACTAACGAGGAAGGAGAAAAGAAAG ACATGGGAATGCAGCTCTACCGAACAGGTTCTACATTGCCGGATTGTTCACACGCGTGTGGATCATGCTTTCCCTGCAAG AGGGTGATAGTGAGCTACAAGTGCTTGATTGCAGAGTCATGCCCTGAAGTTTACAGGTGCATGTGTAAAGGGAAATACTA CCATGTACCTTCCAATTGA
Protein sequence (LotjaGi3g1v0036700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMIFSSKAYKVFLLVSFSMVLSTSWSLEVIPNHVKLNNLQEEKAATNEEGEKKDMGMQLYRTGSTLPDCSHACGSCFPCK RVIVSYKCLIAESCPEVYRCMCKGKYYHVPSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| PANTHER | 11 | 111 | 101 | 3.4E-35 | – | |
| PANTHER | 11 | 111 | 101 | 3.4E-35 | ||
| Phobius | 11 | 21 | 11 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 112 | 86 | - | – | |
| Pfam | 62 | 109 | 48 | 5.9E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Stomatal complex development | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. |
Expression pattern of LotjaGi3g1v0036700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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