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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0037900 |
| Transcript ID | LotjaGi3g1v0037900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylate-binding protein; TAIR: AT3G14450.1 CTC-interacting domain 9; Swiss-Prot: sp|Q9LRR6|CID9_ARATH Polyadenylate-binding protein-interacting protein 9; TrEMBL-Plants: tr|I3SRJ2|I3SRJ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0037900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4099145..4106783) extracted from Lotus japonicus Gifu genome v1.2.
GAGATACCTTTTAAAAAAAACTTTAACTCAACAAACAAAACGGAGGTGGTATTCACTACAATTAATGTGGGGTTTTAACT TTCAAGAGAGTGAGGGTTGTCTTGATTGCAATTTCAAAGATCATCTCTCTCCACTCTCCTCTTTCAGTCACTATCTTCAC GCACTCACTCACTCGTATAACTCACCACACTCGTGGCCCATCCTGTCTGATCACCCCTTTCCAAAACCCTAATTTTCTCC CTTTTTGTGATCTACTATTTTTTTCTTCATCATCATCCTCCAACGAATTGCATTCATCGCGTTTCCCTTATTCCCCGTTA AAGGGGACCCTAATTTGATGTAAAAATCAAATCTTTTTTTTTTTGGTTTCTTTCCCCCAATTTTCTTTGTTTCTGATGAA TTTGGGAATCTGAACAATTTTCCATTTTTGTGAAAAAAAATAAATCTTTCCCTTTTTCTGAGGCTATATATTGTAAAATT GTTGTTGGGGTTTTGTTGTGTTTGGTTGAGATTCCACCATGGCTGCGGCTACTGAGATTCCTTCCTCTGCTGATGCTGCT GCTGCTGCTGCTACTGGCAGCAAATTGGACTCAAAACCAAACCTGGATTCTGAATTCAACATGCAGAAACTTGTTGACAT TTTCACCAAGTTGAATCCTTTGGCTGAGGAGTTTATCCCTTCATCCTATGCTGCTGCTGCCCACCGTGATCACCTTCATC AGGGCTTTAATCAGTGGTCACCTAACCCATTTCTGGTCAACAACAACAACAACAAGCCCTTAGCTGATGATCAGTACCCG AACGCGAACAATCGAAGGGTATGGTTTGTTTGTCTTTCGTTCGATCGAATTGTCAATTCTCATTGTTTGATTTTGCTTGT GTCTGTGCAGCTGGAAAATAGGGTTTTTGTTATTGTACTTAGTATGCATGATAGCTGAATATAGTGATCCTGTGTTTATT TACTTTGCTGATATATTTGATTTGTGATGCATTTTGATTGTGATCAATGATATCGCTTCATGGAAAATTTGACCCTGTGA CAGTTTTTTTATCTAGGGTTAAAATTTGTGTGGTATTCCTCTTTGATGTTTTATTTTTGCATTTCTTATGTGCATGATTT GTAGTTCTTTTGTTTTCATTGTCAGTTCTCATTGTTTGATTGTGCTTGTGTCTGTGCAGCTGGAAAATGGGGGGTTTGTT ATTGTACTTAGTATGCATGATAGCTGAATATAGTGATGCTGTGTCTATTTACTTTGCTGATATATGTTATTTTTGATGCA TTTTGATTGTGATCAATGATATCACTTCATGGAAAACTTAACCCTGTGACAGTTTTTTTATCTAAAATTTTTGTGGTTTT CCTCTTTGATGTGCATGGTTGGTAGTTCTTTGGTTGTCATTGTTGAATCAATTTTGTTAGTTTTCATATATCCTTTGAAT TAACTAGATGGTGTAGGTTATCTGTGAGATTTTATACAGTAAGCGAGGAGTGTGGTTTCTGTTGAAGAGTAACGGTGATA TCTTTGAAATAGCATTTTCATGTGGAGGTTAATCATGAATGTTGTTGCCATAATTCTTTGTGTTTAATGAAACTTTTATA CTTTTGTCATCTTGCAGAGAAGAAACAATTTTAACCAAGGGGGAAGGAGATTTACTGGAAGAGTACTTAAGGCTCAGAGA GAAGACAGCGTTAGAAGAACGGTTTATGTTTCTGATATTGATCAGCATGTAAGTGAGAATGGGTTGAATGATTTCTGTTG AAGAGGATGTTGATTGTTTTGAGTTCCATTCCCATTATTGAAAAACGGCATTATTTGAACAGTCTCTTGCCTTGGTGTAG GTAACTGAGGAGCGGCTTGCTGCCTTATTCACCACTTGTGGATCAGTAAGTCTTGTGCTTGATTAGTACCTTAGTTAGCC ATTTCTTTATAAGTTTGTAATGATGTAGAAATTAATACAACAACGACAAAATCCTTATCCCACTAAGTGAGGGGAAATTA GTACAATGCTTGGATAAATGTAAACTAGGGTGTTCGATTGCAATGTCTTAATTTTTTTCCGTTCTGGAACAATGTTTTAT GCTTTTCACTATTATCCTGTGGATGCATTATGAAATATCATGCGACCTGGTTCAGTGACTTGAAAATGGACATTGCCTTC CATTTTGTGAGTGTTTGTATGCTGGTAATTATATGTTTATATTCCTTAAACTTGTTTAATTATCCTGACCCTGATATAGA AGCATTATGGGACTGGTACGAAGTCAACTGTAGTAAACTTCACAGATATTTGAATCTGAAATTTAATATATTATCTAACT AAGATTGTTGCTTGAGTGCTCACTGTGAATCTGTTCATCCGAATCTGAATTATTTATTGCTTTTGCTGACCTTCTGAACT GAGCTCCAAATATATTTTTCTTGATTGGTTTGAGTCATTTTGTCAACCTATTATCTGATGCACTTTTATGTTTCTCGTAT AACTTCCTTTCAGGGCATATCTAGGATTTAAAGTTGATTATTTATTCCGAATAATCACCTAAATTATGACATCTTATTAA ATCACTTGATTTGTTGAAGGTAATTGATTGTCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCATTTGTGGAGT TCGCAGATGAGTGTAAGTTTTTGTTGTGCTAATCCAACTATCCTTGACTTAGCCCTGAAGACATGTGGCACACACGCACC GGAGACTTGAATTTCTTCAACTGTTATTATGCATTTTGACGGAAATTTGTGTCAACAGATGGTGCAAGGGCAGCTTTAAA TCTCAGTGGCACTGTCCTTGGATACTATCCAGTCAGGGTGCTTCCTTCAAAAACTGCTATTCTTCCTGTGAATCCTACAT TCCTTCCTAGGGTACGAATACTTTCTATTCCTTTCAAATGTGTATTTGCCTATTTGGGTAATGCAAGAAGTTATGGTTCA AAATCTTTTCAATCTATTAAACTGTTCTCTATATTTTGCATTATGCAGTCAGATGATGAGCGTGAAATGTGTTCCAGGAC TGTCTACTGTACAAATATTGATAAAAAGGTATTTCATCATTTTATAGGAAATCACAAAAAGGAATCATTTCAGGAAACAT TTCTTTCTTGGGAATAATTGATGACTGAACTATTTTTTTTGAAAGCGCAACTTTTATTTAATGAAGATGATAGATATGAC ACTGTACAAATATTGATAAAAAGACATTTCATCATTTTATAGTAAATCACAAATAGGAAACATTTCAGGATATATTTCTT TTTTAGGAATAATTGATGACTGAACTTTTTTTTTTGAAAGCACAGCTTTTGTTTAATGAAGATAATAGATAGGAGACCAA CCCTCTCATATGGTAAACGTTACATCAAGTCATGCACGAACCAAAGCACGAAAAAAAAAACCAGGAGAGGCAACCCTAGA ACGCCTCTGCACACTCCTAAGAAGGAAAATAACAACGAAACTAACAATGACAATAAAAAACAACCCAAACCAAAGATAAC TACTCCTCAAGGAGCCCCATGAATTGGTGATTTTATTTTATCCCTTTTCGCGTGCTGCGTCTTTAGTTTGCATAGATGGG TGTCCAAGTTGAATGTCTTAACATGTTACTTTTCTCAAATATGTGAGTGCAGGTTTCTCAGGCTGAAGTGAAGAATTTTT TTGAAATATCTTGTGGTGAGGTAAGACCAAATTGATTGTTACAAAACCCTAGAACATATTTATTTGAGATGCTAAATGGT GGCTGGCATGTACTGTAACTCACTTGGATAGGAGTTTACTTACAAATATCAGGGATGGGTATTGAACCCCCCCGTGATTG AACATTCCTTTCCTAGTCCCACTCCCTGGCCTCCTAGGCGTGCTACCTTTGTGAGAGGGAAGATTGGAATAAATTTAGGT TGCTGAGATAAGTTTCGAGGGAGAACCAGGACTCTGAAAATTCTTTGGTCGAGACTCGAGAGATACTCTCAAGATTCATA TTGATACACTATGAATTTTTGTCATTTATATCAATTCTAGCCTATTTTCTGAACAAGTACCTATTAACCTTGTGCTTAAT TTGTGGTGTGGCCTCGCTTAAGCTGTATCAGTATCTAGTACCAAAAAAGCAAAGGTGGTTTACATTAACTTCCTATTTTA CAGGTTACTCGCATACGGCTCTTGGGAGATCATGTGCATTCAACTCGAATTGCTTTCGTGGAATTTGCAATAGTAAGTCT TGATTATAACAACATGCAATGCTTCCATAGTTTGCTGCAATTAGGTTTTTTAATTAATAAGAATAACTGTACTTGTTCAA TGAGCTCCACCTATATTAGTTACACATTACATGGGCCTCTATTTGTCCTTAATTAGTGTAACTTATGTTTCCTCTATCAG TTTGGGTTTCTTGCCTTGATGTTTATTGTTTTACTTGTTTAGATCTTACATTGATTAGATATATGGCCAAAGTTGAGCTT ATAAAGGCTTTGGCAATCCTCAACTTACGAGCTAGCTATGAGGTAAAGTTAGGCTTAGCCCAAATTTTAAGATTGTATCA GAGTCTATTCTAGATACGTTTATTTGGTCACCCACAGATGTCCAGTTCTATAATCTTCACATTCCAGATGTCTGACACCG GGTGTGTTAAGGTCCCACATTGAATAGAGATATGTCTAAAATAGTTTTTATAAAGGGTTTTGGGGTAGAGTTAAGCTCTT AAGCTATCTCAAATTATAAGATGGTATTAGAGCTTATCTTGGATCTGTTTCTTGGACCAACCACGGATGTCTAGTCCTGC AAACTTTCCGCTCCAAATATCCAGTTTTGGGTGTGAAGGGTGTTTGTTAAGGTCTCATTTACTTGAGAATGACCAAGTAA GTTCTTGTATATCGTAGAGCAACTCAAATGTCCAAATGTTGAGATGGTGTTAGAGCCTATCCTAGATCCATTTATTAGAG CAACTCATAATTGGATTACCCCACAAATGTCCAATCCTGCAAACTTCATGTTCTAGATGCCAGTCCTGGGCGTGAGAGAT TGTTCATGAAATTATAGGATTTAGTCTTTTAAATATTGAAATAGGAAAAAGGAACACATTGAATTTTGTTATAATATTAT TGGTTGTAATCTTGCTCATATTTATAGTAATGGGTAGACTCCTAGTTCTAGTTAATTAAGGAAACTAATTAAGACTCCTA GTGCTAATTAAATAAGGAAGCAAAGCAATATAAATAAGAAAATAAAGTAACCAGTTTAATGAATAATCTAAATTACCTTA ATTAGATATGATCAAGATATTATAAGATATCTTCTTCATTTCTAACTCTCCCCCTCAGCCTAATGAGCGTCTTGACAAAT TATTGTTACAAATATACCCTTTAGAAAAAGGAAAACTAATGAGTGTCTTGACGAATTATCTGGGTTGATGAATAGGTCAA CCTTTCGAACTTTTTCTAAATCCATGGGCAGAAGAGACAACCTTTAGTACTTGATCTGGTGAGATTGATGCAAGTCAAAA CTAATTCTTCTAGGTGGTCGCGGGGTCAGCTGATTCCGGAAATAAAAGTAGATAATGACTAGGGTGAAAACCAAGGGAGT ACTACTTTATGTGTGGTGCAGATAGGTTATAACGATTTATGACCTTTCCTGGGCTTGTTAGTCGAATGAAAATTGCAGTT GTTAATTATATCAACAAATATTTGTGACATTTCTTCCTAAGAATAAGGATGAATTAATCAAGCTCAGTTATTTTCTTAGA TAGACGAAACTTTGATTGCCATATGTAATCATCAGTAGTTTGTTTTTGTGCTCTTTTGTTTTGGTCAGACTCAAGAATGA TTACATAAAGCCCCAAGAAAGATTGTGATGTTGCTAGTGCTAGCATTGTTATGTTAACTATCATAAGAGCAAACCATTAT CTTGACTGGTTATTTCTTTTTTCTTGAACAGGCAGAAAGTGCCATTATTGCCCTAAGTTGCAGTGGGATGCTCTTGGGAA CCCAGCCAGTCAGGTTTGGCCCCTTCGGTGGAGGATTATTTTTGCTATGCAAATTTCAACTAAATTAACGTTAATGAATT TTTTTTTTGTCCTGTAGGGTTAGCCCTTCAAAGACACCTGTGAGGCCAAGGGTTCCTCGCCCAACAACAGCACATTAGCT GATCAATGTGATCCAAGACTTGCACTGGCGATTTGCTCAACTTTCCAGTTGTGACTTTTCTGGAAGGGTGGTGAAACTTC CCTTTGTTTCAACATTTTGATATTTTCATTCCCCGCAGTTACTTTTTATTCGAAGAGCATGTGTTATCTGCTCTAAGTTA AACTTTCTATGCACCAGTCTCCATCGAAAGATTTATTAGGCCAGTTTAAAGTATTTTATGGTTATGATCAAGCACTGATC ATACTTTAATTAGTTTTAAACTTTGAAATTCAGTATGCCTCTATGTTTGAATTTTAGGGCTGGAAAAGGTGTGTGTAGCG GGGAAGTCAAGAGGAATTTAGTGGAGTTAAATGCTTCAGCTAGCTATCGTTTAATAGAAATGGCAAGGGTAGAATCAAAA TGTCTAGTCATTGGAATAGTACCTGTTTAGGTTGTCTTGGTAAAGAGTGAGCAAATCTTCGGTACTACTGTAGTACTGAA CACTCGTGTTTAGGGAAGGAAATTTCTCTAAACAGAGTTTGCTAGGTTTAGGGGACCAACCCCATACCTTGTAGTTCAGA AGCTCATTTTGGTTCTTAGGCAGTACGCGCTGGTTGTCCGATTTTTTTGGATTAAGAATTTGGTTAGTAGCGGGCATGTT GGGAATAGGGCTGTTAAAGTTGGCTAATAAGATTAAGATTTTTTTTACTGATTTATATAGTGGGGAGGTCCCCTTGCCAT ATCCTTGATTTCCATTCTTTGATCTACAATATGATTTTGTCGAGCTTGCAGTAGCAAGTAAGAAATGCTCCTTTGTCAAA CACTAGCTTATCCTCATATTCCACCTTTCATTGCCTTCACAGATACAATTTTTCTGGTTTTTTTATCTTGATAAAATTTG TAGGTCATTTTGTTAGTTATCTCATGAAAATTCACACAGCAAACAACACCTACCAAACGCATCACATGTCATCAATCTTC TGTTTTGCCAAAGAAAACCAACTTTAAAACCAAACCAAATGAAATCCCCTCTCCCATTGCACACATGACCTTCCCTTAAA TCCCACCTTCAACAACACTACACACCTCCACAGAACTGTCTCTCCCCAACTTTGCCAAATAATAGGCTTCCACATTTCCC TCTCGCAAATATGTCTCACCCCCAAACAATTAACCTGAGAAATTAGTATATCAATTTGATGTAGAATTTGATACAATTTC CAAGGCCTCTGCTCCACGTTGTTTACCCATCCCAAGAATCGCTCTCAACAACAACCGTGCTAAAGCCATATTGTTTGCAG AAAAGAAGGGCCTGTAATATTGTATGTATCTCCGCTTTGTAAGCCCATAAAACCCTTGATGCCTTTGCAAAAAATCCCAG CACCTCCCTCTTATGATTCCTCAAAATACCTCAAATTCCACTCCTACTTGGGTTCCCTACTACTGACTCGTCAACAACCA ACATTGCACATGCCTTACATTCACTACTCTTGGAAACTT
CDS sequence (LotjaGi3g1v0037900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCGGCTACTGAGATTCCTTCCTCTGCTGATGCTGCTGCTGCTGCTGCTACTGGCAGCAAATTGGACTCAAAACC AAACCTGGATTCTGAATTCAACATGCAGAAACTTGTTGACATTTTCACCAAGTTGAATCCTTTGGCTGAGGAGTTTATCC CTTCATCCTATGCTGCTGCTGCCCACCGTGATCACCTTCATCAGGGCTTTAATCAGTGGTCACCTAACCCATTTCTGGTC AACAACAACAACAACAAGCCCTTAGCTGATGATCAGTACCCGAACGCGAACAATCGAAGGAGAAGAAACAATTTTAACCA AGGGGGAAGGAGATTTACTGGAAGAGTACTTAAGGCTCAGAGAGAAGACAGCGTTAGAAGAACGGTTTATGTTTCTGATA TTGATCAGCATGTAACTGAGGAGCGGCTTGCTGCCTTATTCACCACTTGTGGATCAGTAATTGATTGTCGAATTTGTGGT GATCCACATTCAGTTCTCCGTTTTGCATTTGTGGAGTTCGCAGATGAGTATGGTGCAAGGGCAGCTTTAAATCTCAGTGG CACTGTCCTTGGATACTATCCAGTCAGGGTGCTTCCTTCAAAAACTGCTATTCTTCCTGTGAATCCTACATTCCTTCCTA GGTCAGATGATGAGCGTGAAATGTGTTCCAGGACTGTCTACTGTACAAATATTGATAAAAAGGTTTCTCAGGCTGAAGTG AAGAATTTTTTTGAAATATCTTGTGGTGAGGTTACTCGCATACGGCTCTTGGGAGATCATGTGCATTCAACTCGAATTGC TTTCGTGGAATTTGCAATAGCAGAAAGTGCCATTATTGCCCTAAGTTGCAGTGGGATGCTCTTGGGAACCCAGCCAGTCA GGGTTAGCCCTTCAAAGACACCTGTGAGGCCAAGGGTTCCTCGCCCAACAACAGCACATTAG
Protein sequence (LotjaGi3g1v0037900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAATEIPSSADAAAAAATGSKLDSKPNLDSEFNMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLV NNNNNKPLADDQYPNANNRRRRNNFNQGGRRFTGRVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICG DPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEV KNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGMLLGTQPVRVSPSKTPVRPRVPRPTTAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 25 | 310 | 286 | 1.2E-147 | – | |
| PANTHER | 25 | 310 | 286 | 1.2E-147 | – | |
| Pfam | 42 | 57 | 16 | 3.5E-4 | ||
| MobiDBLite | 82 | 110 | 29 | - | – | |
| MobiDBLite | 82 | 111 | 30 | - | – | |
| Gene3D | 82 | 203 | 122 | 2.1E-16 | ||
| SUPERFAMILY | 99 | 203 | 105 | 2.31E-18 | ||
| CDD | 125 | 204 | 80 | 9.72849E-50 | ||
| ProSiteProfiles | 127 | 202 | 76 | 13.106 | ||
| SMART | 128 | 198 | 71 | 6.4E-13 | ||
| Pfam | 129 | 191 | 63 | 2.8E-11 | ||
| Gene3D | 211 | 305 | 95 | 2.9E-14 | ||
| SUPERFAMILY | 214 | 305 | 92 | 1.49E-15 | ||
| ProSiteProfiles | 224 | 300 | 77 | 11.963 | ||
| SMART | 225 | 296 | 72 | 8.3E-11 | ||
| Pfam | 226 | 292 | 67 | 5.4E-8 | ||
| MobiDBLite | 294 | 313 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0037900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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