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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0039700 |
| Transcript ID | LotjaGi3g1v0039700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q6BN88|ATG26_DEBHA Sterol 3-beta-glucosyltransferase; TrEMBL-Plants: tr|I3SCE4|I3SCE4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0039700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4281117..4284426) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTCGGCATGAAAGACATGTTACAATAAGATACATTATGAAGTCATAACATAGGATCCACTAGCTTAAATGAAATGA AGACAAAAAATAACAATTTCAAGGAAAATCGGTGTAGTTACACCATGAAGGACATGTCACATATAAGATGCATCAACTTT TGCAGAAAGTGGATTAATTGGATCAAAAGTTGTTTATGCTCAGCTACTGTATCTGTGTTGGTGAACGGAAGCCTAGGCGA GGAATTTAATATGGAGAAAGGGTTGCGACAAGGGGATCCTTTAGCTCCTTTTTTGTTCTTGATTGTCGCGGAAGGACTTA ACAGATTATTTTTCCAAGCAGTGAGTAATGGCAGCTATGTGGGTTTCAAGTTTGGAAATAATAATGCTTTGGAAATTTCA ATGTTACAGTTTGCTGACGACATTGTGTTTCTGGGAGAGGCATCTATGAGTAATATTGCGACAGTAAAATGTGTGCTGAG GTGCTTCGAATTGGCATCAGGTCTGAAAGTAAATTTCCACAAAAGTCGATTAGCAGGGATAGCTGTGGAGGGTAATAACT TAGCCAGGTTTGCTGCTGTGTTAAATTGTAAATTGATGACTATCCCTTTTGTATACTTGGGTATTCCAGTTGGTGGGAAA CCGAGAGGAGCACAGCTATGGGAACCAGTAATTGCTAAAATCAGGAAAAAGTTGTCTAAATGGAAGCAAAAAACAGTGTC TTTTGGAGGTAGGATTTTCCTAATACAAAGCGTGCTAACTGCCTTACCCCTGTTTTTCCTTTCTTTTTTCAAGCTGCCGA TAGGGGTTGGCAAAAGCTGTGTCCGCTTGATGCGCAATTTTTTATGGGGAGGCTCTGAAAATGAAAACAAAATTGCCTAG GTGAAATGGACGGACGTCTGTAAGCCCAAAGAGCTTGGGGGTTTGGGGATCAAGGATCTTTTTACTTTTAACAAAGCCTT GCTTGGGAAATGGAGATGGCGGTATTTGACGGAACCTGACAGTCTTTGGAGGAGGGTAATTGAAGCTCAACCTGATCACT ATTCTTGTGGTTCTTCTTGGTGGAATGACATTCTGTCCTTGTGTCCGGAAGATGCTGATGGTTGGTTCTCTTCGGGGTTG AAAAAGCTGGTTGGGGAGGGAGATCAAACAAAGTTCTGGTCTGAGGATTGGCTTGGTTCAGGGTTATTATCCGCAAGGTT TCGCCGGCTGTATAATTTGTCAATAAATAAATACAGCAGCATAAAGGAGCTTGGTTTTTGGGAGGGTGGTGTCTGGAAGT GGAGGTTTGAGTGGCGTCGCTGTTTGAGAGGATGAGAATTATCTTGGCTGCAGGACCTGGAGTTAGTCATAAATTGTGGG AGGGTGATAGAGGGGAGGGGTGATAAGTGGGTGTGGGAGCCAGGGGATGGAGGGATTTATTCTGTTAACACAACTTACTC TGTTTTGCAGGTAAATCATCTGGAGACTCCGGCGTGTGACTTTAAACAAATCTGGTCAGCGCCCGCACCTTCTAACGTGA GGGCTTTTGTGTGGCGGTTGATGCTGAATCGGATTCAAACAAGGGACAACTTAAGACGTCGGCAAGTACTTTTCAACCCG GATGATTTGACTTGTCCGTTTTGCACTACGGTGGAGGAGTGTAGCGGTCATCTTTTCTTCACTTGCGTATTCTCTATGGG CGTGTGGCAAGCACTGCATCGCTGGTTGGGGATATCTGTGGCTTTACCGGCTTCAACTCTGGCCAATTTTGCCCAGTTTT CAATCACAGCAAGGAATAAAAATCAGCGTCTTGGGGAACTAGCTATCTGGATAGCTACTGTTTGGTCGCTTTGGATACAG CGGAATTCTATTATTTTCAGGAACAATGCCTTGGACCATAGCTACCTCCTTGATCTGATTCAATCTCGTTCCTGGCACTG GCTCAAAGCGAAATTCTGCGGGTTTACTTATTCTCTTTATGAGTGGAAATCTTGTCCTTTGGAGTGCCTCTCTTCTCTGT AGGACCGCTGTCAATTCATCTCCATCTCATGTTGGGGCCATCTCTAACGTGAGGTTGCTGTAAAAATGCTAGGTAATTGG GTGGAAAGGCCTACGAATGTTGTTGCTACATTGGATTCCAATTCTGTGCTTGTGAGGGTCTTGGTCGTGTGGACACTTGA TGAGTTTGCTGGCTGTTAGTGTTTGGTATTTTTGGTTTAGTTGGCTTTGTAATATGAAACAGGGAGGGTTATAGGCATGC TTGTTGGTGGGTTAGATGGTTTCTTTTTTACTAGTCTGTATTTTATCTATCTTCTCCTTTTCTTCTCTTTTGTATTCGGG TTAAGCACCCCTTGTGCTAGTTGAATACAATTCTTTGGCTTACCTAAAAAAACATATAAGATGCATCATAAAGTCATAAC ATGGGCCCGCTTGCTTAAATGAAATGAAGACAGAAACAACAATTTCAAAGAAAATCAGCACAATTGCGGCATAAATGACA TGTGATGAAGAAGTCTTCTTATCATAAAATTGATTTCCTTAATCTAACATAGTATTGTAAAATATCTAAAATAATACTAG GTTGGACAACCAAAACTTGCAGTAAACCACAAAATTAGGGCATTTATAGTATATGGCCGATTAGATACATGATAAAGTCC TATTATGAGGCTCATTTGTTTAAATTAAATTAAGAGAAAAATAATAATTTCAAGAAAAACCAGAACAGTTTCAAGGAAAA GCAGAACAATTCTGGCATGAAAGACATGTCACAAATAAGATACATCATAAAGTCCAAAAAAGGAGTCTGCTTGTTTAAAT GAAAAGAAGAAAAAAAATCTCATATTTGTGGGGGAAAAAACAAAGTGAAAAGGCAATATATACTTACAAAATACATTTTC GTGCTTGGAAGATGCAATCTAGAAATGAGAGAAACTGAATTGAAGCCTGAGACGTTGGAGATTTAGTCCCCAAGGGGAGA AGGATTGTGAAGGTTAGGGTTGTTGTCGTCATGATGATAAAAGTTGGTATAACTTTTTTAGAAGAGAGACTATGTAGTTG CGCTTAAAGTCAGCTAAGATGAGAGGAGACAATCGAATGGTGGACGGAAAACACTATTTAAGTTTATGTGGGTTTAGGGT TAGTGGATAAGATGGGAAAAGAGAGATAGAAGTGTCGGTGCCAGAGTAATGAATAAAGGACATAGTGGTGGCCGACACGG AAGAAAGGGACGCTTAGAGTCAGCTAAGATGAGAGGAGACAATCGAATGGTGGGTGGAAAACACTATTTGAGTTTATGTG AGTTTAGGGTTAGTGGATAAGATGGGGAAA
CDS sequence (LotjaGi3g1v0039700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAATCGGATTCAAACAAGGGACAACTTAAGACGTCGGCAAGTACTTTTCAACCCGGATGATTTGACTTGTCCGTT TTGCACTACGGTGGAGGAGTGTAGCGGTCATCTTTTCTTCACTTGCGTATTCTCTATGGGCGTGTGGCAAGCACTGCATC GCTGGTTGGGGATATCTGTGGCTTTACCGGCTTCAACTCTGGCCAATTTTGCCCAGTTTTCAATCACAGCAAGGAATAAA AATCAGCGTCTTGGGGAACTAGCTATCTGGATAGCTACTGTTTGGTCGCTTTGGATACAGCGGAATTCTATTATTTTCAG GAACAATGCCTTGGACCATAGCTACCTCCTTGATCTGATTCAATCTCGTTCCTGGCACTGGCTCAAAGCGAAATTCTGCG GGTTTACTTATTCTCTTTATGAGTGGAAATCTTGTCCTTTGGAGTGCCTCTCTTCTCTGTAG
Protein sequence (LotjaGi3g1v0039700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNRIQTRDNLRRRQVLFNPDDLTCPFCTTVEECSGHLFFTCVFSMGVWQALHRWLGISVALPASTLANFAQFSITARNK NQRLGELAIWIATVWSLWIQRNSIIFRNNALDHSYLLDLIQSRSWHWLKAKFCGFTYSLYEWKSCPLECLSSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 138 | 138 | 4.7E-25 | – | |
| PANTHER | 1 | 138 | 138 | 4.7E-25 | – | |
| Pfam | 3 | 49 | 47 | 8.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0039700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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