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LotjaGi3g1v0041900.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0041900
Transcript ID	LotjaGi3g1v0041900.2
Related isoforms 1	LotjaGi3g1v0041900.1
Lotus japonicus genome version	Gifu v1.2
Description	LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G78815.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp\|Q9ZVA0\|LSH7_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7; TrEMBL-Plants: tr\|I3S377\|I3S377_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0041900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:4495811..4496350) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCCAACAAAGGAAAAGACATAGCTGAAGGATCCTCGCCTGCTTCAGATCATCATCATCATCAACAACAGCAACAGCA GCCTCTGAGCAGGTATGAATCTCAGAAGAGAAGGGACTGGAACACCTTTGGACAATACTTGAGGAACCAAAGGCCTCCAG TGGCACTTTCACAGTGCAATTCCAACCAAGTGCTTGAATTTCTGAGGTACTTGGATCAATTTGGAAAGACCAAAGTGCAT GTTCAAGGGTGTTTGTTTTTTGGTCAAGCTGAACCGCCTGGTCCTTGTACTTGTCCTCTAAGACAAGCTTGGGGGAGCCT TGATGCTCTCATTGGGAGGCTTAGAGCTGCTTATGAAGAAAATGGAGGCTTGCCTGAGGCCAATCCTTTTGCTAGCGGCA CCATAAGGCTCTATCTACGCGAGGTTCGGGACTCTCAGGCTAAGGCTAGAGGGATCCCTTATAAGAAGAAAAAGAAGAAG AGGAATGTCATGAAGGCTATGACTGAGGGTGTTTCAAGTTCAAGCTTGCCTATGCAGTAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0041900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCAACAAAGGAAAAGACATAGCTGAAGGATCCTCGCCTGCTTCAGATCATCATCATCATCAACAACAGCAACAGCA GCCTCTGAGCAGGTATGAATCTCAGAAGAGAAGGGACTGGAACACCTTTGGACAATACTTGAGGAACCAAAGGCCTCCAG TGGCACTTTCACAGTGCAATTCCAACCAAGTGCTTGAATTTCTGAGGTACTTGGATCAATTTGGAAAGACCAAAGTGCAT GTTCAAGGGTGTTTGTTTTTTGGTCAAGCTGAACCGCCTGGTCCTTGTACTTGTCCTCTAAGACAAGCTTGGGGGAGCCT TGATGCTCTCATTGGGAGGCTTAGAGCTGCTTATGAAGAAAATGGAGGCTTGCCTGAGGCCAATCCTTTTGCTAGCGGCA CCATAAGGCTCTATCTACGCGAGGTTCGGGACTCTCAGGCTAAGGCTAGAGGGATCCCTTATAAGAAGAAAAAGAAGAAG AGGAATGTCATGAAGGCTATGACTGAGGGTGTTTCAAGTTCAAGCTTGCCTATGCAGTAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0041900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSNKGKDIAEGSSPASDHHHHQQQQQQPLSRYESQKRRDWNTFGQYLRNQRPPVALSQCNSNQVLEFLRYLDQFGKTKVH VQGCLFFGQAEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGLPEANPFASGTIRLYLREVRDSQAKARGIPYKKKKKK RNVMKAMTEGVSSSSLPMQ

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	35	35	-	–
PANTHER	PTHR31165:SF9 View details on PTHR31165:SF9 Search for proteins/transripts with this domain View external data on PTHR31165:SF9	2	173	172	6.3E-101	–
PANTHER	PTHR31165 View details on PTHR31165 Search for proteins/transripts with this domain View external data on PTHR31165	2	173	172	6.3E-101	IPR040222 Show description in modal box View details on IPR040222 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04852 View details on PF04852 Search for proteins/transripts with this domain View external data on PF04852	23	144	122	6.6E-64	IPR006936 Show description in modal box View details on IPR006936 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51697 View details on PS51697 Search for proteins/transripts with this domain View external data on PS51697	31	158	128	77.67	IPR006936 Show description in modal box View details on IPR006936 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	158	179	22	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0041900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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