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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0042700 |
Transcript ID | LotjaGi3g1v0042700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; TAIR: AT1G53250.1 histone-lysine N-methyltransferase, H3 lysine-79 specific-like protein; Swiss-Prot: sp|Q865B7|PRGC1_BOVIN Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; TrEMBL-Plants: tr|K7LUT9|K7LUT9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0042700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4554229..4558812) extracted from Lotus japonicus Gifu genome v1.2.
CAGAGAGCAGAACACCACAGTGAAGTGGAGATACAACTGGAGCTGCTACTCTCCCACTCATCCATGTTCCATTTCAGGAG CTAACTATCTACGTTGTAGTGCTGGGAGCACCACTTCACCCAACATGCTCTACTTCAACTCTCTGTAATCTTTCTCTCTC TCTCTCTCTGTGACTGTGTGTTTCTTTCTCTCATTCTATAGCACAATGTTTGACCCATTACCTATTTTTCTTGACATTAA AAATGCAATCTTATTTAATTTTCATATTATCTGTATGATAAATTTCTTCATGGGGTAGCGGGAAAAGGATAATACATGAA ACCTATTTTTCTTGGCATGAAAAATGTTTTTTTTTTCCACAAATGGATAGGTTATTAAATTCTTATCAGTTTGCTCTGTA ATCTAATCAATATTTTTCACTTCAATTTCTGTGAATATCAGAGGAAGGTCTATTCCACATTTACATTCTCCCATGACTCA TGTTTCCACCACTGATTCACGGCTTCTCTTGACCAATGTGGTGGGTTGTGCTTGCACATTTTGCCCTCCAACAACACTGC AAGTGAAAACTGCAACCCCCAGATTAGTATTTGTTTGTTCCTTGCAAAGGGTTCTCTCCATTGAAGAGCTGCAGATAAAT GTTGATGATGATTCTGACAATCAGTCTGAAACTAGTGTTGATTCTTCTGATTATTTGAACGGCGGGGATGGAGTTGTTGG CCTTAGTGACTCTCTAGAAATAGAATCACTCAGTAGAAAAGCTGTTAAGGAGAGGATGAGAAGATTTAAGATAGGGCTGG CAAACAAAGGAAGAGTGCCTTGGAACAAAGGAAGGAAACACTCTGCAGGTAGTTTTTATTTAAATGGGCATACATTGATA TAATACCTTATAGTTGGCTAATGCAGAGTAAGTGATTGTGCACGTAATGCAGAGACTCGTGAGCGAATTAAGCGAAGAAC ATCAGAGGCTTTGAGGGAACCCAAGGTGAAGTCAAGTAAGAGTCATTTAGTTTTTGTTTTTTTAGTGTTCCTTCTATTAT GACATGCCATGTTATTGCAATGATTTTGATTGTTATTTTAGGAAAATGGGGAACTATTTTTTTTGTGTTCCTTCCTCTCC TTATTATAAGCATTCAATAAGGAGAATAATTTTCTATTGCTAGGTAGTTCCTTTCTCTTTATTTGATTCGCCTAGTAATT TATGTTCACATTCCACCATCTGAAAAAATTTCAGGTAAGGAAGAAGATGGCTGAACATCCCCGTTTTCATAGGTAAACAT ATCTGCCATTGGGTTTTTCTATATACCTCCTTAATACAGATTGTACTTTTATACCATGGAAAATTGTATTTTATACAAGT ATTTCACATTAGGAAGAGTATTACTACTCCTTCGTTAACATATTAGAGTTGCTATAGTACATATTATGGTGGAATTGCAT TGGCAATAATTATAATTGACATAGTATTGTATGTTACTTGGGCTCCGAGAAACTAACAGAGTGTAGCAGTAGCAGGTACG GAATCTATTTTTTAGTTACCATTGTTTGTCTAAGTGTGTGTTTGGATATTAGTTGAGTGTAGCTTGAACACACTTTCATC CCAATTCATAAGAAGAGTTATCTTCACGTTTTATCTTAAAATGCGTGTTAACGTCTGTTTGAACTAGTGCCAACTGCCAA TGGATATCCAAATATAGCCTATGTGATTTATAGGCTCATCTGCTTAACAATATGAGGCCACCCTACATTTTTTATTTAAT CTGAGTACATTTTTACTCATTGCTGTAATTGATATTTTGCTACTTCCACGACTGTTATGTTATGTCTGACAATTTGCTTA GCTGTTTGATGTTTTCTCTGGAATTACTATATTAATTAACTAGTGAATTCTATAAAGGAGATTTGTTCTAATATTACATT TGGAGTAAGATAATAATCATATTTCTGGTCTCAATGCCCCTGAGAGCTTCTCTAAAGCAAAATCTGCATTTATTGGTAAA TATAGTTCGCTAGAAATCTTGTCTGTCTTTATTTTTGGCATGAAAATTAAATGAACGTAGCCAATGGGAATTCATTCTCC AATCATTCATCTAGTATCAACCTTGCTGCAGTGATAAAATCAAGGAAAAGATAAGCTATTCACTGAGACGTGTTTGGCAA GAGCGTCTGAAGTCAAAGCGGTTTAGGGAGCAAATTTTCCTTTCTTGGGAACAATGCATTGCAAATGCAGCCAAGAAAGG AGGGTGTGGTCAGGAAGAGCTAGATTGGGATAGCTACAATAAGATAAAGGAACAACTGGAACTCCAGCAGCTTCTGCAGG CTGAGGAAAAGGAAAAAGAAAAGCTGATGGCAATTGCGAGAGCAGAGAAATTCATCCAGTCATGGAGTGAGTGCCTAGCC AAAGAAGCTAAGAAAGGAGGGAGTGGAGAAAAAGAACTAGACTGGGATAGCTATGAAAAGATACAAGAAGAAATGTTTCT CCTCAATCAGATTCGGCGTACTACAGAGAAGGCAAAAGCCAAGGAGAGGGCTAGGACAAAAGCGGAGAAGGAAGCACGGA TAAAGGCAATAAAAAAGGTAATGCTCAATCAAAAGAAAAAAGATCTTCGGGAAAGGATTAAAGGAAGAGGGAATATTAAG AGTCAGCTGTGCAAAAATGCAAATGAAGATGGAGAAGCTGCCTTGGAAATTACTCAACAATTTAAACTTGACACTAAATT AACTAAGGTAGGCATTTATAGCTTCCACATTTACTGGCTGTTTATAAATGCAACATGATGATTGATGAAGTTATTTAGAA CTGGAGTAGAGCATACCTATTGAGATGGCTAGTGGATTCAAATCTCAGCTAAACCGTGTAATCCTAAATCATTTGCAAGA TAGAGGAGAATGCTGCACAGAGTTACTTCTGTTGTAGTATAAAAAGAGGAAATTCAATTGTTAGATCCAGTAACTAATTG GTTTCTTTGTCAGTTGAACTTTGAAAACATTTACACTCTAGGTTATCTTTCTAGAAACTTAATCTGCACCCTGTGATAGC AGGCATATATCTTTTTAAGAGTGGTATTCATTCCACTATGATGAGCCCATCCCCTTTTTGTTTGTTAATTTTCATCTATC CCTATTTACTTCTAATTTTGGTTTGTTTATGTCTTTAGATTAACATAAGTAAGAACATCAACAGTGAAGTAGCTAGAGAA GGAGGCTTTTCTAATTCCATTTATCCAACTTACAATAAATTGGATTTAGAGGTTATCAAGAGAGAAAAGTTACGGAAAGA AGCATCGTTTGCAGATCGGATCCAAGCTGCTAGACTAAAAAAGGGCAACCTCCACTGACAATAACTCTTCTTCACACTCA GTTTACTCATTTACTTGTAAGTGTACGAGGAACAAGGTAATCACTACTGATAGCTTGTTGATAGTAGAGTAGGATACTGG TTTGAACAGTTCAATCTCATGATATCCATGCTTTTACAGTTTTACTTGCCTTTTTGAATTTCAGCTCCTTTGCTTCTATT CCTTTTTCTCTATTTCTTTGTATAGAAAAACACTCTTTATATCTCTTTCGCTCTCTATTCTAGGTAGATAATCATTTTAA CTTTGATGTGTAGTAATCATACAATGGCTTCGTGATATTTAAGTTGGGGATTAACTTATTTCCTTAAAAGATCACTTTAA GCATATTTACTTGTAACCTTTTGTTTATTTCAAATTTGAAAGCCATCAAATCAACTATACATATTCTTTGCTAAACGTGG TGTAGCAACTGCAATCAAGGGATGAAGCTTAGGCATAGTCATTCCATAAACTTCTCTAGTATCAATCTCCTGAGGATTCA AACCCTTAATTGGCTCCCAATCAAAGCAATGAAAGAGCCTAGCCAAAGCCATCAAGACCAAACTCACACCAAGCGGTGCG CCAGGACACTTCCTCTTCCCAGCACTGAAAGGCAGAATCTTGAAGTCACTGCCATGGCTGATCTCAACTCTGCTCCCATC ACTCGGCAAGTGCCTTTCGGGCCTGAACTCCTCCACATTGTCCCATAACTTCGTGTTCCGGCCCAAACCGTGCGTGTTGA TGAAGACGCGTGTCTTGGCTGGGATGTGGTAGCCGTTGATGGTGGTGGCTCGAAGAGATTCGTGTGGAATGAGAAATGGC CCTGCTGGGTGCATGCGGAATGTTTCGCGCACGACGCATCGGAGGTAAGTGAGGTGAGGCAAGTCGGATTCTATGACCAT TCTGTTGGGGCCAACTACGGTGTCGAGCTCCTCTTGGATTTTGTGGAGAACGCGTGGGTGTTTGATTACTTCTGCCATTG CCCATTCATTGGTAACAGCTGAAGTGTCTGTTGCAGCAGCGATCATATCCTGAATGGTAAACAATTCTAATCATTATTTT CAAATTTAAGCAAAACAATAGTTCAAATATTTACTAGGCTTAATACATCAGAAGGCCCCTGTAATTGTAAAGGGAATCAA ATTCAGGGCCTGAAAATTTTTTGCATCAAATTGGGTCCCTAGAAATTTTTTTTTAATTCAATTAAGGCCAAAGTGTGCCA GCAGACTATTTTATCCCAATCATC
CDS sequence (LotjaGi3g1v0042700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTACTTCAACTCTCTAGGAAGGTCTATTCCACATTTACATTCTCCCATGACTCATGTTTCCACCACTGATTCACG GCTTCTCTTGACCAATGTGGTGGGTTGTGCTTGCACATTTTGCCCTCCAACAACACTGCAAGTGAAAACTGCAACCCCCA GATTAGTATTTGTTTGTTCCTTGCAAAGGGTTCTCTCCATTGAAGAGCTGCAGATAAATGTTGATGATGATTCTGACAAT CAGTCTGAAACTAGTGTTGATTCTTCTGATTATTTGAACGGCGGGGATGGAGTTGTTGGCCTTAGTGACTCTCTAGAAAT AGAATCACTCAGTAGAAAAGCTGTTAAGGAGAGGATGAGAAGATTTAAGATAGGGCTGGCAAACAAAGGAAGAGTGCCTT GGAACAAAGGAAGGAAACACTCTGCAGAGACTCGTGAGCGAATTAAGCGAAGAACATCAGAGGCTTTGAGGGAACCCAAG GTAAGGAAGAAGATGGCTGAACATCCCCGTTTTCATAGTGATAAAATCAAGGAAAAGATAAGCTATTCACTGAGACGTGT TTGGCAAGAGCGTCTGAAGTCAAAGCGGTTTAGGGAGCAAATTTTCCTTTCTTGGGAACAATGCATTGCAAATGCAGCCA AGAAAGGAGGGTGTGGTCAGGAAGAGCTAGATTGGGATAGCTACAATAAGATAAAGGAACAACTGGAACTCCAGCAGCTT CTGCAGGCTGAGGAAAAGGAAAAAGAAAAGCTGATGGCAATTGCGAGAGCAGAGAAATTCATCCAGTCATGGAGTGAGTG CCTAGCCAAAGAAGCTAAGAAAGGAGGGAGTGGAGAAAAAGAACTAGACTGGGATAGCTATGAAAAGATACAAGAAGAAA TGTTTCTCCTCAATCAGATTCGGCGTACTACAGAGAAGGCAAAAGCCAAGGAGAGGGCTAGGACAAAAGCGGAGAAGGAA GCACGGATAAAGGCAATAAAAAAGGTAATGCTCAATCAAAAGAAAAAAGATCTTCGGGAAAGGATTAAAGGAAGAGGGAA TATTAAGAGTCAGCTGTGCAAAAATGCAAATGAAGATGGAGAAGCTGCCTTGGAAATTACTCAACAATTTAAACTTGACA CTAAATTAACTAAGATTAACATAAGTAAGAACATCAACAGTGAAGTAGCTAGAGAAGGAGGCTTTTCTAATTCCATTTAT CCAACTTACAATAAATTGGATTTAGAGGTTATCAAGAGAGAAAAGTTACGGAAAGAAGCATCGTTTGCAGATCGGATCCA AGCTGCTAGACTAAAAAAGGGCAACCTCCACTGA
Protein sequence (LotjaGi3g1v0042700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLYFNSLGRSIPHLHSPMTHVSTTDSRLLLTNVVGCACTFCPPTTLQVKTATPRLVFVCSLQRVLSIEELQINVDDDSDN QSETSVDSSDYLNGGDGVVGLSDSLEIESLSRKAVKERMRRFKIGLANKGRVPWNKGRKHSAETRERIKRRTSEALREPK VRKKMAEHPRFHSDKIKEKISYSLRRVWQERLKSKRFREQIFLSWEQCIANAAKKGGCGQEELDWDSYNKIKEQLELQQL LQAEEKEKEKLMAIARAEKFIQSWSECLAKEAKKGGSGEKELDWDSYEKIQEEMFLLNQIRRTTEKAKAKERARTKAEKE ARIKAIKKVMLNQKKKDLRERIKGRGNIKSQLCKNANEDGEAALEITQQFKLDTKLTKINISKNINSEVAREGGFSNSIY PTYNKLDLEVIKREKLRKEASFADRIQAARLKKGNLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 259 | 259 | 2.2E-139 | – | |
PANTHER | 1 | 259 | 259 | 2.2E-139 | – | |
Pfam | 123 | 148 | 26 | 1.0E-4 | ||
Coils | 234 | 254 | 21 | - | – | |
PANTHER | 258 | 436 | 179 | 2.2E-139 | – | |
PANTHER | 258 | 436 | 179 | 2.2E-139 | – | |
Coils | 300 | 320 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0042700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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