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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0042800 |
| Transcript ID | LotjaGi3g1v0042800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT3G15010.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LKA4|UBA2C_ARATH UBP1-associated protein 2C; TrEMBL-Plants: tr|V7AHW3|V7AHW3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0042800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4559696..4567294) extracted from Lotus japonicus Gifu genome v1.2.
CCTTACAACACTGCCACCACCCACGATCACCACCACTGCTAACACCACAACCACCATCATATAATTGGATTTTAATTGGA TATGATTGTTTTTTTTTAAATAATCCAAAATATCTATTAGTTTTGGCCCAAGTAAATTAGAATGCCCTAGGCCCAAAAGG TAACATACTTATACTTACATCCCACGCAACCCACCACCCAAACCCAGTATCTATATATTATACTCCATCAATATCTTTAT TGATAAATCCTTCTTCAAACTCACTTTCACTCCCACTCAATTTTCAGAGTGGAGCTCCACAATAGGGATTTAGGGTTAGG GTTTAACAATTCCCCTTTCATCTCCACTCCATGGCCATGATGGATCCCACCAAGAAGCGCAAGCTCGACGAAAACGGTTA CGGCGTCGTCGGCGGCGGTGACATCGACCACCTAATCCTCTCCCCATCAGAAGCCCGCAAGATCATCGAACGCTTCACCC AAGACCAACTCATCGACATCCTCCAAGACGCCGTCGTCCGCCACCCCGACGTCCTCGTCTCCGTCCGCGCCCTCGCCGAC CCCGACGTCGCGCAGCGCAAGCTTTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCTCTCTTCTC CGCCTACGGCGAGCTCGAAGAAGCCGTCGTTATTCTCGATAAAGTCACCGGGAAATCGAAAGGGTACGGTTTCGTCACGT TCCGCCACGTCGACGGCGCGCTTCTTGCTCTCCGGGAGCCGAGTAAGAGGATCGATGGGCGCGTTACTGTCACGCAGCTT GCTGCTGCTGGGAACTCCGGGTCGAATACCAATGCTGCCGACGTCGCGCTTCGGAAGATCTATGTGGCGAATGTGCCGCC GGATCTCCCCGCTGATAAGCTTCTGGCGCATTTTTCGATCTATGGGGAGATTGAAGAGGGGCCGTTGGGGTTTGATAAGC TGACCGGGAAGTCGAAAGGGTTTGCGCTGTTTGTGTATAAGAATCCGGAGGGGGCGCAGGCGGCGCTTTTGGATCCAATG AAGACTGTGGAGGGGAGGCAGTTGAATTGCAAGCTGGCTATAACTGATGGCGGGAAGCAAGGGAAGCGTGGCGGGGCTGG TGCTGGTGCGGCGGGACCGGAGGTGGCTCAGGGGCATGGGAATTCTCATGGGCATCATGGGGATGGGATGGGGATGGCTC CGGGTGGTGGGGCGGGTTCAGGTGCAGGGTCGCTTTCTGGTGGTCAGTATGGTGGTCCGGTTGGGTTGGGTTCTTATGGT GGATTTGGTGGTGGGCTTCAGGGTCAGCCACCGATAGGGAATCATGCTATGAATCCATCGGTTGGTGGGGTTGGCAATCA GGCGAACCAGTCATCGTTGGGTGGTGGTACTGGCGCATACGGTTTGGCTGCTCATTATGGGGGCTATGGTGGGCTTGGAT CTACCGGTTTCGGTGGATTGGGTGCTGCTTGTGCTGGTGCTGGTGGTTTTGGAGGTGGTGGTGGTGGTGGTGGTGCTGGT TCGGCAGCTGGTGCTGGTGCTCCTGGTGGACTTGGTGGTCCGGGTGGTGCGTATAGGAGTTCAGCTGGAATGCAAGCTGG TGGGTATCCAGAGGGTGGGCACCACTACAGTTTATCAGGTCCCGGCGGGTATCACAATCAGCAGCATCATCCTCCTACTG GGGCGTCACCTGTTCCTAGGGTTCCATATCCAAATGCTCACCCTTACTATTGAGGTAGTTTTGCATCTTCATATTTTTTA CCTTCATTGTGGGTTTTATTTTCTTCAATTGTTTTCTGTCTGTTGTATGTTTTGCACTCGTAATTAGGCTGTGTTTTTTT GTGTGCATTGTTTTCCTTGTGTATTATGTTTGCTTGTGGTTTGCAGTTCAATGTCTTTGGGGTTTTGCATTATTGGTTGT GTGTGTGCTGTTGGATCTGATTGTGTTCATCATTAGTTAATGATGAGGAGGCAATGTAAATTTGTGATAGTAAACACATC AATTTTTTAGGATGTACCATTACATGGAACAAGTGTAATTTCTTTTCGATTTTCAATTGCTGTCTTCATTTATTTGTCAC CATTTAACCTCCTTGTTTGTTATCTCACAAAACATTTATTTAGTCAAATTGAACATCCCTCATTGCTTGTGTTGTTTTGG AGATCATGCAGCTGGTCTGAGGGTTTAAGAAACCTGATCAATGAATGTTGTGATTCTCGATGCAACAGTAGCAAGATAAA CCCTAAATTGAACTTGTATAGTGAACTGGTATGGACTATATGGACTGGTAATCGATATAATTCCATCGTTCCAGTTGTAA TTACACTTGAGTCTGGCAATTATGTTGACTTTCGATTTTGTGTTACTTTTTATAAAATTATATTCCAACTGTTCTGGTTT CATTTAGGGTTTCTTTGTAGTGGATTCCTACCTATGTTATGTTCTGAATAACTTCATACGTGGAGATCAAGTTTTTTGTT TGTTTGTCTAATTTACACAATTAAACCATTTTCATTTACAAAACACAAAAACTTGATCTCCATCAGTACATAAGTAAGAA TCCACTACCAATACCAAGACACACTATCAATTAGATAAATTAAATGAAACCAGACTATCTAGCATATGCTGTTATATGTT GTAACTTGAAGTTTATTTCTGACTTATCCCAACTATTATTCAGAGCTTATCTAGAGCTTAACATGTCTGTTATGTGCTTG TTTCATTCCCAATTTGTAGAATTACCTTGATACTGACTTGACGCTGGCCTCTGTTGTTTTGGTCATTATCTTCTAGTCAC CTGTGAATTGTAATTGTGCTTTGCTTAATTTGGTTGCTCACTCAATGTGTTTATTCTTTTTTTTTCTGCTTGTATTTTTC TCCCTCTTAATTTTAATGTTTGCTATAAATGGTTTTTTTTGTTTCCACCTTGCTTCTTAATTTCATGCCGGTTGTGTATG TGTGTTTTTCCTTGCTTGAAATGATCTTGGAAATTGTATTGGTTGTGTGTGTACATATTGTGCCTTGACATGGGCTGTTT GTTGATGTGGTGGCTACGAAAGGGTGAGCAATGATTTGCTATATTTTGTTGATAAGCACTCATATTTACCCGTTATTCTT TGAATGTTGGTTGTGAAATGATCAGTTGAGTTGAATGGGTGTTTGATTCAGGTGTTACATCACTTATTGGGCGCAGATGC TTTGTGTGCTTCTGGTGATTGCGTGATTGCAGACTATGTGCTCTGGTGTAATGAATATGTTAGCCTGTATTTTACAGCCT CTTGACTTCATCTGCTCCCCCTTTAAGCTTTGATTCATATGATGTTAGTTAAAGCCATTGAGATAGATTAGTTTTGTAAT TTTACCTGGATCATCTCGGCTGTTACAGCGTTTGTTTTGATAATATAGTTCTGGGCTATGATGTTATTTATTAGCTGACT TTGTACTTAGTTACATTTTTCTTTGGTTATCAATATTTTCTATTGCAGTGATATACTCTGCTCATTCGATGATGTGATGG TCTAAATAATATTCATTGTACAATATGGTTTGTGTTATAATCATAATCGGGTCAAAGATTACTATTTCCTAATGGTAAAT CACCTAAGCTTTTCCAAAAGCATTTTAACTCAATGGAGATTTTTTCATGCTGGGGATTGATCAGTTCTCACCTGCGCCAT TTTCTCAATATGGTTTGATACTTAGTAACTTGTCATATGGATTGTTTTATGCTGTACTTCGATAAGCCCCCACGTCTTAT GAAAATATTTTTATTTAAAGAATTGAGATATCAGTTGTTCTCTTAAAACTTTAAAATCATAAAACGGCAGCATATAATTA ATCTGTCATTGTGTTTTATATGGCTGCTATATTCCTATTTTGTTTGTTTCTCCCATTGCTGAGGAGTTTCATCGAGTTAT TGCACCTTTCCTTAAATGTATCAGGCTGGTGCTGTATGGATTTATTGTAACGAACTTGCTGGGTGCCCAGTTTTAACCCA TGATTGCTATTCACTGACATAGAGTGTTGATAAAAAAAACTCTTTATCTATATGAGAAATGCTAGCAACACGTCCTTCTA AGCACATTTTTTAATGCACTCCTTGTGGTTGTCTATTTTTTAAAAGTTCAATACCTTAAAAGTGGTCAATTTATTAAGTA AATGTGTTGACATTTTTTAAAGTAGACCAGTCATAGGGAGTGCGTGGAAGAGTGTATTGGTGGACGCACTCCTTTAACTT ACCATATTGAGTACCTGCAGTATCCTCATGTTAAAGATATCGATGTAGAGCTGTTCTGTGAGATATAGTTGTGAAATTTT AAATTTAAGTATATTGATGCTGTTGTTTCCAATCTTTTAGTTTAGTTTTTGACTGTTGATGATGAAGGTCTTAGCATCTC TAGTGTTTTAGCATGAGATCATATGACAATTGCTAATGTGGAAACTTATTGAGCAAAAGCATACTGTGTTTTACGGCGCT GCTTCATTTGTCTATGAAAAAGCTTGTAGACTGATGTCTGTCTTGCTTCCTTTTGATTTCCCTTCTTTTGGAAATTAATG TGTTCTATCTTGAGAAGTTATTAATCAAACTTTTATGGTAGTAGTCTGATCTTGGATGGTTTGTTGTTTTCTCTGGAACT AAGCCTAGCATTTGCAAATTATTGATCTGGCTCTATATTTTATCTTCTACTACACCCTTGCCTCTCTCCCACCTATTGCT TAATTGCATGTTTAACTCGTTTGGAATGTTTTAGGCGCTTAGCCTCTTCATTTTTTATTTTTTGTTGGTAAGTTTAGCAG GAATTTGCCTGTATAGTCTAGACATTTCACTCCTTTGAAGATATTTTGCTTTATAGAATCATTGTTATGCTGTACAGAGT GCTTCTGTGGGATTGATAAAAATGCCCTTAATCCAGTGTTAAAAACAAGCTGGATTTACTTAGGTCAAATTTCATGATGT CTAGTCTTTTTTAATTACGTCAAATTTGTATTCAATGATTCGTTTTTTCAATTTTTTCACCAACCCAACGAAATTAATGG AATGGCTGTAATGCTTATTGTAATATGTGCTATGGGATAACTGGTTTTATTGTGGATACTGATGCATGGTTTTCCGCAAT ACCTAGATCAAAACATGATAGCATCTATTTTAAGATGAAATGTAAGTGCATATCCTGGGTACCCTTAGCTCTATTTCTGG TCATAATGCTCCTTTCCCTGCCTGTTGGTTGTTTTCTGTAAACATTGTGAAAGGTTCCCAAAGTGGTTGAACATGAACTC AAGATGAGTTGGGGCTGTACTGAAGTTGAAGTGCAACTGTAGCCCAGTATTCAGCTTCCTTTTTACTGTATCAGTCTAGT TAGCATCTTCAAACATATGGTTCCCATGGCAGAATATAGATTGTGGTCTGGTAGCTGGGGCTATTGGTTCTTCAAAACCT GATGCAATGTTACATGGCATAAATGCTTCCTGTCCGCTAACTTTCATCGTGAAAGTGTGATGCTGCATGCATGAATTCAG AAGAAAAGTACACATGGTATTAGTTTAGTAGATGACTTAGAAAGAGTTGAACTTGAATGTTTGTATTGTGAGACCTGGTG TTCTTCAAGTTACTTGGCCGTTGCGGGATAATTTTGTCGGAGGCAAGTTATTGTATGTTTTTTTTAATATTGAAAAATAA TTATTGAATATTAAAATTTCAAGGTTAGCATGGTTCTTTATTTGGTAAGAGTAATGCTAGTACTAGTTACAAAACACAAG ACTTGTGCATTGTTTCAAATAAAATATATCTTATGATGAAAAATTGGATTATGACTATGATAGAAGGAAGTTTTAATCAA TTACATCAATTTTTGCACTGAGGTTCAGTTCCTAAAGCTGATCATTTATCGTGTGGGAAAGGCAAGGCAGTTATTTGAGT AGTTTGAAAAACATTTGGGGTAGAGTAAGTTGTTTCAATCAGTAAATAATAACATCCTAGTATGTGTCTGTATGTGTATT CATAATAAAGTTAAATGATTGAAACTTGAAAGGAACTGAGTGCGTGTTTGGTTCCATGTTTAGAGCCTCAATCAATTTTT AGTGACCATAATCACTTTTAGTTGTTTATACACATGTAATTGATATAGAGAATTGATTTTAGCTTCAAAATCAATTTGTA AGAAGCTAAAGAATGTAACTCCTATTGATATAATTAATTGTAAGATTTTATCATAACATTCCGTAAGGGTCTAATTATTA TTCAAAAGTACAATGATAAGACTCCAAAGCCTAGGTCCAATACTCCAAAGCTCAACGACCCTATTCCAAGCTGGCCCTAG TGCTGAAGAAACTGGATAAGAAGGTTGCTTACCAGTTACCAAGATACCTTAATCACCTCCTTTCAATAAAGGGTTGATCA CTTTTGAGCACACAAACATAGTTGAGATTGGTGGAGAACAATCATCAGATGGATGAGTGAAAATCTTTGATGAAACTGCA TTCAAAGGATATGAATGCAAGTACCAACCAATTGACGGTCATGAATATGGGGAGTACTTGGATGATGTTGAAAAACTTGT GGTCAAAATAATGTTCAATAGGGTAGTGCTAAGCATGAGGTATGAGGAAAGGTGCACGGGGAAGCTACTTGATGCACATG ATCCTCCACTTACCATTACCTTTGACATGGATGTTAATGTAGTGTTTGACATGACTCCCCCTAGATTTCCCACCAGAAGG TCAAACTATGGGAAGGAAAAGAGCTTATCCCAGAAGATTTTCACCTTTTAATATGATGACCTTGGCCTGGTAGAAAGAAT TCATTAAAAGGAAGGTCTAACTGAGTTGTTTTTGGAAGCCAAAGATGATTATTTGAACAAAAAGGCTTGGTTAGCGATTG GCTTGAACAATGAAGAAAAAAAAAGGAAAGTCAGGGAGCAAAGTATTTTCTAAGATCTCATAGGAGGCCGCTGCAACAAA TCTTTTAGCTAGATTGATGTACTAAAATTCCTCCAAATCTTACCAAAAGAAGAAATGATCTCTTGGTATATATCAAGAAA GGTCCAAGACCCAATAAATTTAATTGCAGTCACAGAATCAAATTAAATCTGGAGATCAAGGAGTCAATCAAAAAATCAAT TTAAATCAAGAAGACATTCACAAAATAAAATTAAATCAGGACATCAAAGAGGCAGATATATCAATCTGACCAGATTTTGT AAAGATATAAAAAAAAGCATAAAAAGGTATAAAAGGAGGTGGGAGTTCGAATGAAGGTAAGAGTAGTAAGGTTTTGCTGA TAAAAGGAGAACACCATGGTAAAGTGGTGTTGTTTGATACATAGGATAATAGATGAACGATTTTCATTGAACCTAGCAAT CATGATGTTGCGAAGTTGTTGGGATTGTTTCTTCTAAACAAAAAAGAAGTCAAAGCTCCATTCTGCTGCTTAAGGTGCCT CTCCTATTTCCCTGTTATCGTTTTTTCCTTGGACTGATTGCCTTACTTAGTTCAATAGTTGTGTATTTAAGGTTTGTTTC ATTTGATTTTTGGGTCAGGTTTCTCAGTTTTTTTATTTAAATAAAAATATTGAATAAAAGAGAAATAAATAAAAAAGGG
CDS sequence (LotjaGi3g1v0042800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGATGGATCCCACCAAGAAGCGCAAGCTCGACGAAAACGGTTACGGCGTCGTCGGCGGCGGTGACATCGACCA CCTAATCCTCTCCCCATCAGAAGCCCGCAAGATCATCGAACGCTTCACCCAAGACCAACTCATCGACATCCTCCAAGACG CCGTCGTCCGCCACCCCGACGTCCTCGTCTCCGTCCGCGCCCTCGCCGACCCCGACGTCGCGCAGCGCAAGCTTTTCATC CGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCTCTCTTCTCCGCCTACGGCGAGCTCGAAGAAGCCGTCGT TATTCTCGATAAAGTCACCGGGAAATCGAAAGGGTACGGTTTCGTCACGTTCCGCCACGTCGACGGCGCGCTTCTTGCTC TCCGGGAGCCGAGTAAGAGGATCGATGGGCGCGTTACTGTCACGCAGCTTGCTGCTGCTGGGAACTCCGGGTCGAATACC AATGCTGCCGACGTCGCGCTTCGGAAGATCTATGTGGCGAATGTGCCGCCGGATCTCCCCGCTGATAAGCTTCTGGCGCA TTTTTCGATCTATGGGGAGATTGAAGAGGGGCCGTTGGGGTTTGATAAGCTGACCGGGAAGTCGAAAGGGTTTGCGCTGT TTGTGTATAAGAATCCGGAGGGGGCGCAGGCGGCGCTTTTGGATCCAATGAAGACTGTGGAGGGGAGGCAGTTGAATTGC AAGCTGGCTATAACTGATGGCGGGAAGCAAGGGAAGCGTGGCGGGGCTGGTGCTGGTGCGGCGGGACCGGAGGTGGCTCA GGGGCATGGGAATTCTCATGGGCATCATGGGGATGGGATGGGGATGGCTCCGGGTGGTGGGGCGGGTTCAGGTGCAGGGT CGCTTTCTGGTGGTCAGTATGGTGGTCCGGTTGGGTTGGGTTCTTATGGTGGATTTGGTGGTGGGCTTCAGGGTCAGCCA CCGATAGGGAATCATGCTATGAATCCATCGGTTGGTGGGGTTGGCAATCAGGCGAACCAGTCATCGTTGGGTGGTGGTAC TGGCGCATACGGTTTGGCTGCTCATTATGGGGGCTATGGTGGGCTTGGATCTACCGGTTTCGGTGGATTGGGTGCTGCTT GTGCTGGTGCTGGTGGTTTTGGAGGTGGTGGTGGTGGTGGTGGTGCTGGTTCGGCAGCTGGTGCTGGTGCTCCTGGTGGA CTTGGTGGTCCGGGTGGTGCGTATAGGAGTTCAGCTGGAATGCAAGCTGGTGGGTATCCAGAGGGTGGGCACCACTACAG TTTATCAGGTCCCGGCGGGTATCACAATCAGCAGCATCATCCTCCTACTGGGGCGTCACCTGTTCCTAGGGTTCCATATC CAAATGCTCACCCTTACTATTGA
Protein sequence (LotjaGi3g1v0042800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMMDPTKKRKLDENGYGVVGGGDIDHLILSPSEARKIIERFTQDQLIDILQDAVVRHPDVLVSVRALADPDVAQRKLFI RGLGWDTTTDGLRSLFSAYGELEEAVVILDKVTGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNT NAADVALRKIYVANVPPDLPADKLLAHFSIYGEIEEGPLGFDKLTGKSKGFALFVYKNPEGAQAALLDPMKTVEGRQLNC KLAITDGGKQGKRGGAGAGAAGPEVAQGHGNSHGHHGDGMGMAPGGGAGSGAGSLSGGQYGGPVGLGSYGGFGGGLQGQP PIGNHAMNPSVGGVGNQANQSSLGGGTGAYGLAAHYGGYGGLGSTGFGGLGAACAGAGGFGGGGGGGGAGSAAGAGAPGG LGGPGGAYRSSAGMQAGGYPEGGHHYSLSGPGGYHNQQHHPPTGASPVPRVPYPNAHPYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 303 | 283 | 2.0E-99 | – | |
| PANTHER | 21 | 303 | 283 | 2.0E-99 | – | |
| SUPERFAMILY | 61 | 153 | 93 | 1.17E-21 | ||
| Gene3D | 63 | 157 | 95 | 1.3E-20 | ||
| ProSiteProfiles | 76 | 153 | 78 | 15.255 | ||
| CDD | 76 | 151 | 76 | 1.27471E-37 | – | |
| SMART | 77 | 149 | 73 | 2.0E-20 | ||
| Pfam | 78 | 145 | 68 | 7.4E-15 | ||
| Gene3D | 158 | 261 | 104 | 2.7E-16 | ||
| SUPERFAMILY | 160 | 275 | 116 | 3.49E-19 | ||
| CDD | 168 | 243 | 76 | 1.04043E-30 | – | |
| ProSiteProfiles | 168 | 245 | 78 | 13.754 | ||
| SMART | 169 | 241 | 73 | 2.0E-13 | ||
| Pfam | 170 | 236 | 67 | 2.1E-9 | ||
| MobiDBLite | 245 | 291 | 47 | - | – | |
| MobiDBLite | 320 | 339 | 20 | - | – | |
| MobiDBLite | 413 | 460 | 48 | - | – | |
| MobiDBLite | 445 | 460 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0042800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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