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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0043700 |
| Transcript ID | LotjaGi3g1v0043700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TCP family transcription factor TCP4; TAIR: AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3; Swiss-Prot: sp|Q9MAH8|TCP3_ARATH Transcription factor TCP3; TrEMBL-Plants: tr|A0A072TRR1|A0A072TRR1_MEDTR TCP family transcription factor; Found in the gene: LotjaGi3g1v0043700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4668370..4672102) extracted from Lotus japonicus Gifu genome v1.2.
CACATTTTAGCTTCTCTATTACTACCTTAAAGTACATGAAATCACATTTATGTTAACTTTAATGCAGAAACTAACATGCA GTAATAAAATATGTACTAAATTAAGAAAGGGGAAGAAGAAATAGAGAGGGTGGGGAAGAGGGTGAATTGGTGAAAGTTGT TTGGGGCAGCAAGAGCCAAATTTTGGTGATCCGATTGAATGAATTATGGATGGGTTGGTGGTATTATGTTATGTAGTACA AGAACAGCAGCAGAAGAGCAGTGATGAAATCACAGATTTTTAAGACCTCCTTTCTGACCAAACACTGCCACCCCTTACCA CTGCCATCATTCATCATCACCCAGTCCTATAGGGCCAGAATGAATTCCTCTTCCCTATAGCCCAACCCTTAATTAATACT AACTGTACTCTACTCTACCCTCTCTCTCTCTCTCTCCCTTTTTTGTCTGGACCTGTGTGTTGAGATTTGGAAAATTTGCT GGAAATGTTGTGAGAGGACACCTCCTTCAGTTGGGTTGTTTCCTAAGCCAAGTGGGTATTAACCAACTCATCCAACTGTA TTGTTGTTCCAGTTTGGTTAATGCATAAAGGGTCTCATCTCATTTCAACATAAAGGCAAAAAAGAAAGCATTTTGAGAGA AGAGAGAAAGTAAGAGAGAGAGAGAGACAGAGAGAAAAGAGATGGGTTAGGGTGAAAACTGAAAAGGAGTTTGCAATTGC ATAACAACAACATTCTCTAGAGAGACTAGTCTAGTTTAGTTGAAGAGGGGTTGTTTATTTTCTTTTTGTATGTGGTGATG GAATTGGGGAAATTGAATGGCAGGAACTACTTTTGGAAGAAGCAGAAGCAAGTTTCAGAAGGGTGGCAGTTGCAGCAGCA GCAGCAGAAACAGAAACAAGAGAAGGAGAAGAGGTGTGAGAAGGAATCATCATCATCAAACCTCTAGAAAAAAGTGTGCT ACTTGGGTAAAAGCTGGAAGAGGAAAAGCACAACCACAACAACAACAACAACATCAATCCTCTGACTCTGGATCCTCACA GCAGCAATCATCATCAACAACAACAGAATCATCAGAATCAGCAGAATCAGCAGCAGCAGCATCAACATCACCACCACCCT CATCATCTAAATTCAAGCCATGTAGCAGAAGAAGAAGGAGAAGACGAAGACGACCAAGATTCTTCTCCTCCTTCATCCCT CAACAAACCTCATCTTCACCATTTTCATCATCCTCAACACCATCACCAAGACTCAACCTTCCAAACCCAACTCCAATATC TCCAGCAACACCAAAATCAACAAGACCCTTATGGTTTAGGAACAGAATCTCTGCAGCAACCACCAAAGAAACGTTCCTTC CACCTTCCACCACCACACCCACCACCTCCTCCGCCTTCTTCTTCCACCGAATATGCAAGAAAGATGGGAGAAACAACACA GCAGGACCAAACAGCAGCAGCAACAACCGCCACAAACACACCGCCAGCCTCTTCGAGGCTGGCAATGAGAGGCTCCGGCG GCGGAGAGATAGTGGAGGTGCAAGGAGGCCACATTGTCCGGGCGACCGGAAGAAAAGACCGCCACAGCAAGGTTTGCACC GCCAAAGGTCCCCGGGACCGCCGCGTTCGCCTCTCGGCACACACCGCCATTCAATTCTACGACGTGCAGGACCGGTTGGG CTACGACCGACCCAGCAAGGCCGTCGACTGGCTCATCAAGAAGGCGAAAACCGCCATCGACGAACTCGCCGAGCTTCCCG CATGGAACCCAACCACCGCGGGAACCTCCTCCTCTCAACCGCCACAAAATCAGCAGCAACAGAACTTCAGCGAAATGCTC CACCGCCACTCGCCGGTGGACGACCCGGTCATCGCCTCCGGTAGCCGCATGGTCACCGGAAGAATCCCAGAACAACAGTT TCATTCACAGCAGCAATTGGGCAATGAAGATGATGAAGGCGGAAACAACCACAACAACACCGCCACGAAATACAAATACA CCGCCACTGCTGGTTCTGGTTTTCTTCAAGCGTCGTTGGATAACGACATTGCTGACACTATTAAGTCTTTCTTTCCGGTT GAGACCGCCACTACGTCGTTTCATAGCTACCCGCCACCGCCGGACTTGTTATCGAGGACGGCGAGCGGCGGTGGCAGCAG CCAGCAAGATCTGCGGCTTTCCCTACAGTCCTTTCAGGACCACCACCCCATCATGTTCAACCACCACCACCACCAGGGCC ACCACGAGCCGGTTCTCTTCGCCGGAACCCCCGCTCTCAGCTTCGACGGTGGTTCCTCCGGTGGGTGGCCTGAGCAGCAG CAGCAGCAGCAAAACCACCACCACCAGAACCACCAGCAGCAGCAGCAACAGGAGGAGCATGAGCATGGTCGGCTTCATAG GATGGTGGCTTGGAATGTTGAAGCTGCAGAAGCTGCTAACAGTGGCCACGGTGCTGGGTTCATGTTCAGCGCGCCTGCGC CGGCGATAATTCCGGCGTCCGTGTTTAGTCATGGCCATCGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAAC ACCCCTTCCATTCGTGCTTGGATAGACCCTACTTCCATTACTGCGGCGAGCCTCGCCGATCACCACCACTACCTCACCCC GGCGATCCACCAGGCTTCTGTCTCCGGCGCAGCCGGTTTCTCTGCCTCCGGTGCCTTCTCCGGTTTTCGCATACCAGCAC GAATTCAGGGTGAAGAGGAGCACGACGGTGTATCTGACAAACCGTCCTCTGCTTCCTCTGATTCTCGCCATTGATGATTG AAAACACATAAATCCAAACTATACTTCTCCAGGTTCTCCCTTTAACAACCACTTCATGAAATCACCATTAGATTCCTATG TTTGTTCTTACTTGCAAATTTCCTACAATGAGTGTTTCAGGGCTTTCATGGACTTATCTTGAAGATGATTGGTGAAGAAC AAGCATGCTTTTGAAAGATTAGGATGAAAAATTTTCAGCTGCAATGGGAATTCAAGAGCAACTCAGGTGTTTGGATTTCA GATGTTTCAACTTCAATGGCATATCTATATGCTGTGGGAATGAAGAAAATCTAGTTTGAATGCACAGGTTTTCCAATCCC AGGCTATTTATCTGTTAATTTATGTTCCACTACCTAAGTTTTTCAAGCTTAGACTAGGACTAGGAGCACTGTGTTTGTTT GTTTTGTTTCAGCTATGTTGTTGGATTACTATTACTATGATGTTTTCATTTGTAACCACCATTTGTGGTGGTCATGACTT GTTTGTATTTCTTCCATTTCTATGCTAGTTTCTAGTAGTGGTCTAGAAAAACATTCTCAAAGAATAACTATTGCTATTTG CTAGAACTAGTGTTTTTTGCTCAAGTTGTTGAATATTTCCAACTTAGTGCAGACCCGGATGCAAAGTGAGGCCTTTTCAC AATGACAAAAAAGGATAAATGCAAACCCAAATAAGCCGACATAGGAACTTTGCTCTCTTTAGGTGAGAGCATTGAATTGA ACTTTTGTATGATTTTGGCTAGGAATGGTTGGTTATTGCTGGTTTCAAATGAGGGAAGGAAGATAGACCTTTTTTGATTT CTTAGGTGATGAAATGGGGGGTTTTCTTTGCATTAGAATTTAGAAAGAAAGTTGGTTAGTTCTTTTTTTTTACTGCTTTC TCTCTAGTGCAGCCATCAACCAGTCACTATAGTTTTGGAGTAAATCTACCGCC
CDS sequence (LotjaGi3g1v0043700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAAACAACACAGCAGGACCAAACAGCAGCAGCAACAACCGCCACAAACACACCGCCAGCCTCTTCGAGGCTGGC AATGAGAGGCTCCGGCGGCGGAGAGATAGTGGAGGTGCAAGGAGGCCACATTGTCCGGGCGACCGGAAGAAAAGACCGCC ACAGCAAGGTTTGCACCGCCAAAGGTCCCCGGGACCGCCGCGTTCGCCTCTCGGCACACACCGCCATTCAATTCTACGAC GTGCAGGACCGGTTGGGCTACGACCGACCCAGCAAGGCCGTCGACTGGCTCATCAAGAAGGCGAAAACCGCCATCGACGA ACTCGCCGAGCTTCCCGCATGGAACCCAACCACCGCGGGAACCTCCTCCTCTCAACCGCCACAAAATCAGCAGCAACAGA ACTTCAGCGAAATGCTCCACCGCCACTCGCCGGTGGACGACCCGGTCATCGCCTCCGGTAGCCGCATGGTCACCGGAAGA ATCCCAGAACAACAGTTTCATTCACAGCAGCAATTGGGCAATGAAGATGATGAAGGCGGAAACAACCACAACAACACCGC CACGAAATACAAATACACCGCCACTGCTGGTTCTGGTTTTCTTCAAGCGTCGTTGGATAACGACATTGCTGACACTATTA AGTCTTTCTTTCCGGTTGAGACCGCCACTACGTCGTTTCATAGCTACCCGCCACCGCCGGACTTGTTATCGAGGACGGCG AGCGGCGGTGGCAGCAGCCAGCAAGATCTGCGGCTTTCCCTACAGTCCTTTCAGGACCACCACCCCATCATGTTCAACCA CCACCACCACCAGGGCCACCACGAGCCGGTTCTCTTCGCCGGAACCCCCGCTCTCAGCTTCGACGGTGGTTCCTCCGGTG GGTGGCCTGAGCAGCAGCAGCAGCAGCAAAACCACCACCACCAGAACCACCAGCAGCAGCAGCAACAGGAGGAGCATGAG CATGGTCGGCTTCATAGGATGGTGGCTTGGAATGTTGAAGCTGCAGAAGCTGCTAACAGTGGCCACGGTGCTGGGTTCAT GTTCAGCGCGCCTGCGCCGGCGATAATTCCGGCGTCCGTGTTTAGTCATGGCCATCGCCAGTATTTTTCTCAGAGGGGAC CCCTTCAGTCCAGTAACACCCCTTCCATTCGTGCTTGGATAGACCCTACTTCCATTACTGCGGCGAGCCTCGCCGATCAC CACCACTACCTCACCCCGGCGATCCACCAGGCTTCTGTCTCCGGCGCAGCCGGTTTCTCTGCCTCCGGTGCCTTCTCCGG TTTTCGCATACCAGCACGAATTCAGGGTGAAGAGGAGCACGACGGTGTATCTGACAAACCGTCCTCTGCTTCCTCTGATT CTCGCCATTGA
Protein sequence (LotjaGi3g1v0043700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGETTQQDQTAAATTATNTPPASSRLAMRGSGGGEIVEVQGGHIVRATGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYD VQDRLGYDRPSKAVDWLIKKAKTAIDELAELPAWNPTTAGTSSSQPPQNQQQQNFSEMLHRHSPVDDPVIASGSRMVTGR IPEQQFHSQQQLGNEDDEGGNNHNNTATKYKYTATAGSGFLQASLDNDIADTIKSFFPVETATTSFHSYPPPPDLLSRTA SGGGSSQQDLRLSLQSFQDHHPIMFNHHHHQGHHEPVLFAGTPALSFDGGSSGGWPEQQQQQQNHHHQNHQQQQQQEEHE HGRLHRMVAWNVEAAEAANSGHGAGFMFSAPAPAIIPASVFSHGHRQYFSQRGPLQSSNTPSIRAWIDPTSITAASLADH HHYLTPAIHQASVSGAAGFSASGAFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 64 | 64 | - | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 10 | 456 | 447 | 6.1E-128 | ||
| PANTHER | 10 | 456 | 447 | 6.1E-128 | – | |
| MobiDBLite | 45 | 64 | 20 | - | – | |
| Pfam | 48 | 185 | 138 | 1.0E-33 | ||
| ProSiteProfiles | 50 | 108 | 59 | 34.055 | ||
| MobiDBLite | 114 | 135 | 22 | - | – | |
| MobiDBLite | 115 | 135 | 21 | - | – | |
| MobiDBLite | 166 | 187 | 22 | - | – | |
| MobiDBLite | 224 | 249 | 26 | - | – | |
| MobiDBLite | 288 | 323 | 36 | - | – | |
| MobiDBLite | 292 | 310 | 19 | - | – | |
| MobiDBLite | 433 | 456 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi3g1v0043700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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