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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0044500 |
| Transcript ID | LotjaGi3g1v0044500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotidyl transferase ribonuclease H-like superfamily protein; TAIR: AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8W566|Y3514_ARATH Uncharacterized exonuclease domain-containing protein At3g15140; TrEMBL-Plants: tr|A0A1J7HBM7|A0A1J7HBM7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0044500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4751554..4755050) extracted from Lotus japonicus Gifu genome v1.2.
TTGGATTGGATTTGCAATTATGTTATTTTTTTCTTTTGAAGAAAAAAGAAGAAATATGGACAGCACGTGCAACGTATAAA AATGATGAACAAAGAGCTTTGAGTTTGAGCTGAGTGAAAAGTGATTATGGCACTTCTGAGAGCTTCTTCTTTGTCCAAGC TTTTCTCCCATCGTAATCCATTGCTTTCTTCTTCTTCTCTTTCACCTCTTACATTGCACCACTGCACTCCCTCACCCTCT CTTCCTCCAATGCACTCCCTCACCGTCTCTGCCTCCCTTTCCACTTCCGACAACACCCCATCTCCAGACACAACAACACG CTCTCGCTGGAAACCCATGTGCCTGTACCACACGCAGGGAAAGTGCACCATGGTAGCATCTTTTTCATGACCCATCTTGT TTTCTGTCTTGTTCTGCCCAAATTTGAAATCTTTTTCCGAAACAGAATTCTGGGTGTACTAGTTTTGGTTTGCATGCCTT GTGTTTGATAAATTGCTTGAGTGGTCAACAATGACATGATGACCCTGTTGCATTGTTTATCACCATGAAGATTATTTTCT ACATAAGAAGTATTCTTTACTTTTCTTTCTTTTGTTAGTTAGGAGGATATAGAATTATCCTTGTGAATAAGTAGAGTAGA GTAGAATCAGTTTACTCTGAGCATGTTTACGTGTCATACTAGGATTATTGAGTATTTTTCTTTTTTCCCATGTCAATGGT GCTTGTTCAAGTCTTCAGTTACATGTACTAATCTCAGTAGGTTTATATCTTGTAGACTTGTACATGAAGGGGAAACCTGG TGCCATTACATGGTTCCACATAATGGACTTGGTATATGAACTTTTAGCCTATCGTATCATTTCCTGTTTCAGAATATGCT ATTGCAGCACAGGATCAAGCATCATTCTGGATAGACGATTTACTGATTCAGGGATACCACTTCTTGATGTTTACTAAGTA TAGAAGAATATTGTATGAAGACATCAGCTGAATTTATTGGAGTATGATATGACTCATTCTGGAAAATAAGACTTGCAGCT TAGGAACTGAGAGCTTTGTCTTTGTACTATATTTACAATTACGTAGGTGAATATAATTTTTACAGTTTTTTTTATGTTTT CTCCAAATTGTGCAGATGGATGATCTTATCCACCTTGAGAAGTTTAATCATGATTGCTCCAGGGAGCTTCAAGTGAACTC CGCTGAGTTAAACAAAATATGCCCTCAAAATCTAGACTTTTTCCTTGTGCTTGATTTAGAGGGTAAGGTGGAGATTCTTG AGTTTCCCGTTCTAAAGATTTGTGCAAAAACTTTGCAAGTTGAAGACATTTTCCACAGGTTTTGATCTGTGACTCTGTAA CATGTCTTGCCAGAGCAATGTTCTGGGATTGCCTGAAATGTTCTGTTCTTTTTTTTTTCTGTATTACTTTTTATTGTGTT CTATAGCTGTATAAAGGGGTAACATGTTGAAATTACTTTTCTTAAGAATAGTGATTATTAGAAAGTTTAACATCTATATG TACATAGGCATCATTTGAACTTTTTTTTTAAATAATATATTTTATCCCTTGAATGGAATTGTAGCCTCTTGAGTTTTAAA GATTTAAATGCAACCACAGTTTTGTGAGTCTTGCTACATATTTGAGTTAATATGTTTTGATTTCTTAGGTTAGTTTTTTA TAGATTTAAAACTGCAATATACCTATAACTGAAAGGATCATCATTTGTTTTGCTATCTTGCATTTTTAATTTCTCATTGT TCCCTTAACTATTTAACAGGTTTGTGAGGCCCACAGTCATGAGCGAACAAAGAATAAATGAATACATTGAAGGAAAGTAT GGAAAATTTGGAGTTGATAGGTATGCAGCTTATTGTACTTTAACTAAGCTGATTCATACTTGTAATCTGTGTACAATCTT AATCTGTATACAATCTTCTCTGCTTTCTTTTTCATTTTTGCCTAACAAGCATGTTGAACTCTTCTCCATTCTCTTTCTTC ATTATGTTTCTTTCATGGTCATATTTAATTTATAAGATTGCATGTATATTTTTGCTATGATTTCTCAGGTCTGATGAATA ATGTGTTATATTAGTGAAATAAGTTTAGTAATATGTAATTTAAGGACGATAGCAACTAATAGCTAGCACTTCAGAAGACG TATTATGATAGCAACAACCAAGGGATTATCACATGCATTGCCACAAAAAATGCCACTGGTACCCAACTAATATAAGATGC TTCTTAGATAATTTATTTATTTTCCTAGAGTTTGGCATGACACAGCCATACCATTCAAGGAAGTTATTCAAGAATTTGAA GCTTGGTTGATGCAACATCAGTTGTGGATGGGTGGGAAACTTAACCGTGCAGCATTTGTAACTTGGTAAATATCACCATT TCATCGTTCATCTCTTATACATTTTTTTTCGTCTTTTCTGTGTTTCGGTACTTTCCTGTCCTATATATCCAGAATAACTG ACTATGTTCTGTAACATCAAAATATTTTGCTCTTGTAGTGGAAATTGGGATTTGAAGACAAAGGTCCCTCAGCAATGTGA AGTATCGAAGATAAAACTTCCTCCATACTTTGTGGAGTGGATCAATCTCAAAGATGTCTATCTGAACTTTTATAATAGGA GGGTAAGTTCTTTCGCAGTTTAGAATGGACATAAGAATATGATTTAAATTTTTAATCCTTTTTCCATCATGGAAAACAAG ACATGTGGATTAATTGATTAGTTGTGGTTAAGTCTAGAGGGGTGCTATTGATTTTTATATCAATTTAAAGTTGAGACTCT GGAGCATGTAGTCATGAACTAAAGAAATTGTGAAATTTTGAGTGAATTTGATACATTTTAAGCCCCTATGATAGAACACA AGAAGTAATATGGAGAAAGATAGTATTTAGTGAAGTTAACCATGACTGGGTTGAATTTTGTCCCTATTTCTTTTTTTTCC CTTTTGTTTTATTGATCCTTATTTAAGATATTATATGCTTGCTTGTTTATGGATAACAGGCCACGGGAATGGTTACAATG GTGAAGGAACTGCAAATACCATTAATGGGAAGTCACCATCTTGGCATTGATGACACAAAGAACATAGCAAGAGTCTTGCA ACGCATGCTTATTGATGGTGCACTCATCCAGATTACTGCAAGGAGGAATCCTTCATCTCCTGGAAACGTCAACTTTCTTT TCAAGAACCGTATTAGATAGTGGATTTCTCAGTGGAATATGTAACTTCATTCTGTCCTTTAAGAAAGAAGCGGATTCAAT ACTGTTAGATCATGTGGTTTCTGCATATTGGGAGAGTGGGAGTAATGATACTTGAACGGCTGTACACATAATTTTGCACT AGTGAGTGATTGAATTTCATTCAATTCTGAGTAGCCTAATCAATTTGGACTTGGTTGAACTCAAATGGAGTCACGAAGTT TATTAGGTACAGTTGTAAATGTAATTGTGTTAAAAGTATTATTTGAATACAAACTGC
CDS sequence (LotjaGi3g1v0044500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATCTTATCCACCTTGAGAAGTTTAATCATGATTGCTCCAGGGAGCTTCAAGTGAACTCCGCTGAGTTAAACAA AATATGCCCTCAAAATCTAGACTTTTTCCTTGTGCTTGATTTAGAGGGTAAGGTGGAGATTCTTGAGTTTCCCGTTCTAA AGATTTGTGCAAAAACTTTGCAAGTTGAAGACATTTTCCACAGGTTTGTGAGGCCCACAGTCATGAGCGAACAAAGAATA AATGAATACATTGAAGGAAAGTATGGAAAATTTGGAGTTGATAGAGTTTGGCATGACACAGCCATACCATTCAAGGAAGT TATTCAAGAATTTGAAGCTTGGTTGATGCAACATCAGTTGTGGATGGGTGGGAAACTTAACCGTGCAGCATTTGTAACTT GTGGAAATTGGGATTTGAAGACAAAGGTCCCTCAGCAATGTGAAGTATCGAAGATAAAACTTCCTCCATACTTTGTGGAG TGGATCAATCTCAAAGATGTCTATCTGAACTTTTATAATAGGAGGGCCACGGGAATGGTTACAATGGTGAAGGAACTGCA AATACCATTAATGGGAAGTCACCATCTTGGCATTGATGACACAAAGAACATAGCAAGAGTCTTGCAACGCATGCTTATTG ATGGTGCACTCATCCAGATTACTGCAAGGAGGAATCCTTCATCTCCTGGAAACGTCAACTTTCTTTTCAAGAACCGTATT AGATAG
Protein sequence (LotjaGi3g1v0044500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDLIHLEKFNHDCSRELQVNSAELNKICPQNLDFFLVLDLEGKVEILEFPVLKICAKTLQVEDIFHRFVRPTVMSEQRI NEYIEGKYGKFGVDRVWHDTAIPFKEVIQEFEAWLMQHQLWMGGKLNRAAFVTCGNWDLKTKVPQQCEVSKIKLPPYFVE WINLKDVYLNFYNRRATGMVTMVKELQIPLMGSHHLGIDDTKNIARVLQRMLIDGALIQITARRNPSSPGNVNFLFKNRI R
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 229 | 229 | 9.8E-85 | – | |
| PANTHER | 1 | 229 | 229 | 9.8E-85 | – | |
| Gene3D | 25 | 238 | 214 | 2.3E-53 | ||
| SUPERFAMILY | 30 | 212 | 183 | 9.28E-20 | ||
| SMART | 35 | 217 | 183 | 0.0018 | ||
| CDD | 36 | 212 | 177 | 3.63996E-53 | – | |
| Pfam | 40 | 208 | 169 | 1.4E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0044500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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