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LotjaGi3g1v0044500.2

Overview

Field Value
Gene ID LotjaGi3g1v0044500
Transcript ID LotjaGi3g1v0044500.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Polynucleotidyl transferase ribonuclease H-like superfamily protein; TAIR: AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8W566|Y3514_ARATH Uncharacterized exonuclease domain-containing protein At3g15140; TrEMBL-Plants: tr|A0A1J7HBM7|A0A1J7HBM7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0044500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:4751558..4755264) extracted from Lotus japonicus Gifu genome v1.2.

AATAAAAATAGTAATAAAAAAATTAGTAAATATTTTTACTTAAGGGTGTTTATGTCATTTTACAAACATTACTTTTCTTC TCTTTTTTTTAATTTTCAAACAAATTACTTAAAAATCATCCAATTTTCTACTTTTTTTTTCTTTTCTCTTTCTTTCTTTT TCATTTTCTTTTTCTCTCACTTTTTTCCATCTCAAACATATCCTAAGTGTGTATTTGGATTGGATTTGCAATTATGTTAT TTTTTTCTTTTGAAGAAAAAAGAAGAAATATGGACAGCACGTGCAACGTATAAAAATGATGAACAAAGAGCTTTGAGTTT GAGCTGAGTGAAAAGTGATTATGGCACTTCTGAGAGCTTCTTCTTTGTCCAAGCTTTTCTCCCATCGTAATCCATTGCTT TCTTCTTCTTCTCTTTCACCTCTTACATTGCACCACTGCACTCCCTCACCCTCTCTTCCTCCAATGCACTCCCTCACCGT CTCTGCCTCCCTTTCCACTTCCGACAACACCCCATCTCCAGACACAACAACACGCTCTCGCTGGAAACCCATGTGCCTGT ACCACACGCAGGGAAAGTGCACCATGGTAGCATCTTTTTCATGACCCATCTTGTTTTCTGTCTTGTTCTGCCCAAATTTG AAATCTTTTTCCGAAACAGAATTCTGGGTGTACTAGTTTTGGTTTGCATGCCTTGTGTTTGATAAATTGCTTGAGTGGTC AACAATGACATGATGACCCTGTTGCATTGTTTATCACCATGAAGATTATTTTCTACATAAGAAGTATTCTTTACTTTTCT TTCTTTTGTTAGTTAGGAGGATATAGAATTATCCTTGTGAATAAGTAGAGTAGAGTAGAATCAGTTTACTCTGAGCATGT TTACGTGTCATACTAGGATTATTGAGTATTTTTCTTTTTTCCCATGTCAATGGTGCTTGTTCAAGTCTTCAGTTACATGT ACTAATCTCAGTAGGTTTATATCTTGTAGACTTGTACATGAAGGGGAAACCTGGTGCCATTACATGGTTCCACATAATGG ACTTGGTATATGAACTTTTAGCCTATCGTATCATTTCCTGTTTCAGAATATGCTATTGCAGCACAGGATCAAGCATCATT CTGGATAGACGATTTACTGATTCAGGGATACCACTTCTTGATGTTTACTAAGTATAGAAGAATATTGTATGAAGACATCA GCTGAATTTATTGGAGTATGATATGACTCATTCTGGAAAATAAGACTTGCAGCTTAGGAACTGAGAGCTTTGTCTTTGTA CTATATTTACAATTACGTAGGTGAATATAATTTTTACAGTTTTTTTTATGTTTTCTCCAAATTGTGCAGATGGATGATCT TATCCACCTTGAGAAGTTTAATCATGATTGCTCCAGGGAGCTTCAAGTGAACTCCGCTGAGTTAAACAAAATATGCCCTC AAAATCTAGACTTTTTCCTTGTGCTTGATTTAGAGGGTAAGGTGGAGATTCTTGAGTTTCCCGTTCTAAAGATTTGTGCA AAAACTTTGCAAGTTGAAGACATTTTCCACAGGTTTTGATCTGTGACTCTGTAACATGTCTTGCCAGAGCAATGTTCTGG GATTGCCTGAAATGTTCTGTTCTTTTTTTTTTCTGTATTACTTTTTATTGTGTTCTATAGCTGTATAAAGGGGTAACATG TTGAAATTACTTTTCTTAAGAATAGTGATTATTAGAAAGTTTAACATCTATATGTACATAGGCATCATTTGAACTTTTTT TTTAAATAATATATTTTATCCCTTGAATGGAATTGTAGCCTCTTGAGTTTTAAAGATTTAAATGCAACCACAGTTTTGTG AGTCTTGCTACATATTTGAGTTAATATGTTTTGATTTCTTAGGTTAGTTTTTTATAGATTTAAAACTGCAATATACCTAT AACTGAAAGGATCATCATTTGTTTTGCTATCTTGCATTTTTAATTTCTCATTGTTCCCTTAACTATTTAACAGGTTTGTG AGGCCCACAGTCATGAGCGAACAAAGAATAAATGAATACATTGAAGGAAAGTATGGAAAATTTGGAGTTGATAGGTATGC AGCTTATTGTACTTTAACTAAGCTGATTCATACTTGTAATCTGTGTACAATCTTAATCTGTATACAATCTTCTCTGCTTT CTTTTTCATTTTTGCCTAACAAGCATGTTGAACTCTTCTCCATTCTCTTTCTTCATTATGTTTCTTTCATGGTCATATTT AATTTATAAGATTGCATGTATATTTTTGCTATGATTTCTCAGGTCTGATGAATAATGTGTTATATTAGTGAAATAAGTTT AGTAATATGTAATTTAAGGACGATAGCAACTAATAGCTAGCACTTCAGAAGACGTATTATGATAGCAACAACCAAGGGAT TATCACATGCATTGCCACAAAAAATGCCACTGGTACCCAACTAATATAAGATGCTTCTTAGATAATTTATTTATTTTCCT AGAGTTTGGCATGACACAGCCATACCATTCAAGGAAGTTATTCAAGAATTTGAAGCTTGGTTGATGCAACATCAGTTGTG GATGGGTGGGAAACTTAACCGTGCAGCATTTGTAACTTGGTAAATATCACCATTTCATCGTTCATCTCTTATACATTTTT TTTCGTCTTTTCTGTGTTTCGGTACTTTCCTGTCCTATATATCCAGAATAACTGACTATGTTCTGTAACATCAAAATATT TTGCTCTTGTAGTGGAAATTGGGATTTGAAGACAAAGGTCCCTCAGCAATGTGAAGTATCGAAGATAAAACTTCCTCCAT ACTTTGTGGAGTGGATCAATCTCAAAGATGTCTATCTGAACTTTTATAATAGGAGGGTAAGTTCTTTCGCAGTTTAGAAT GGACATAAGAATATGATTTAAATTTTTAATCCTTTTTCCATCATGGAAAACAAGACATGTGGATTAATTGATTAGTTGTG GTTAAGTCTAGAGGGGTGCTATTGATTTTTATATCAATTTAAAGTTGAGACTCTGGAGCATGTAGTCATGAACTAAAGAA ATTGTGAAATTTTGAGTGAATTTGATACATTTTAAGCCCCTATGATAGAACACAAGAAGTAATATGGAGAAAGATAGTAT TTAGTGAAGTTAACCATGACTGGGTTGAATTTTGTCCCTATTTCTTTTTTTTCCCTTTTGTTTTATTGATCCTTATTTAA GATATTATATGCTTGCTTGTTTATGGATAACAGGCCACGGGAATGGTTACAATGGTGAAGGAACTGCAAATACCATTAAT GGGAAGTCACCATCTTGGCATTGATGACACAAAGAACATAGCAAGAGTCTTGCAACGCATGCTTATTGATGGTGCACTCA TCCAGATTACTGCAAGGAGGAATCCTTCATCTCCTGGAAACGTCAACTTTCTTTTCAAGAACCGTATTAGATAGTGGATT TCTCAGTGGAATATGTAACTTCATTCTGTCCTTTAAGAAAGAAGCGGATTCAATACTGTTAGATCATGTGGTTTCTGCAT ATTGGGAGAGTGGGAGTAATGATACTTGAACGGCTGTACACATAATTTTGCACTAGTGAGTGATTGAATTTCATTCAATT CTGAGTAGCCTAATCAATTTGGACTTGGTTGAACTCAAATGGAGTCACGAAGTTTATTAGGTACAGTTGTAAATGTAATT GTGTTAAAAGTATTATTTGAATACAAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0044500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCACTTCTGAGAGCTTCTTCTTTGTCCAAGCTTTTCTCCCATCGTAATCCATTGCTTTCTTCTTCTTCTCTTTCACC TCTTACATTGCACCACTGCACTCCCTCACCCTCTCTTCCTCCAATGCACTCCCTCACCGTCTCTGCCTCCCTTTCCACTT CCGACAACACCCCATCTCCAGACACAACAACACGCTCTCGCTGGAAACCCATGTGCCTGTACCACACGCAGGGAAAGTGC ACCATGATGGATGATCTTATCCACCTTGAGAAGTTTAATCATGATTGCTCCAGGGAGCTTCAAGTGAACTCCGCTGAGTT AAACAAAATATGCCCTCAAAATCTAGACTTTTTCCTTGTGCTTGATTTAGAGGGTAAGGTGGAGATTCTTGAGTTTCCCG TTCTAAAGATTTGTGCAAAAACTTTGCAAGTTGAAGACATTTTCCACAGGTTTGTGAGGCCCACAGTCATGAGCGAACAA AGAATAAATGAATACATTGAAGGAAAGTATGGAAAATTTGGAGTTGATAGAGTTTGGCATGACACAGCCATACCATTCAA GGAAGTTATTCAAGAATTTGAAGCTTGGTTGATGCAACATCAGTTGTGGATGGGTGGGAAACTTAACCGTGCAGCATTTG TAACTTGTGGAAATTGGGATTTGAAGACAAAGGTCCCTCAGCAATGTGAAGTATCGAAGATAAAACTTCCTCCATACTTT GTGGAGTGGATCAATCTCAAAGATGTCTATCTGAACTTTTATAATAGGAGGGCCACGGGAATGGTTACAATGGTGAAGGA ACTGCAAATACCATTAATGGGAAGTCACCATCTTGGCATTGATGACACAAAGAACATAGCAAGAGTCTTGCAACGCATGC TTATTGATGGTGCACTCATCCAGATTACTGCAAGGAGGAATCCTTCATCTCCTGGAAACGTCAACTTTCTTTTCAAGAAC CGTATTAGATAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0044500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALLRASSLSKLFSHRNPLLSSSSLSPLTLHHCTPSPSLPPMHSLTVSASLSTSDNTPSPDTTTRSRWKPMCLYHTQGKC TMMDDLIHLEKFNHDCSRELQVNSAELNKICPQNLDFFLVLDLEGKVEILEFPVLKICAKTLQVEDIFHRFVRPTVMSEQ RINEYIEGKYGKFGVDRVWHDTAIPFKEVIQEFEAWLMQHQLWMGGKLNRAAFVTCGNWDLKTKVPQQCEVSKIKLPPYF VEWINLKDVYLNFYNRRATGMVTMVKELQIPLMGSHHLGIDDTKNIARVLQRMLIDGALIQITARRNPSSPGNVNFLFKN RIR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 21 21 - –
MobiDBLite
mobidb-lite
44 65 22 - –
PANTHER
PTHR23044
53 311 259 1.7E-92 –
PANTHER
PTHR23044:SF61
53 311 259 1.7E-92 –
Gene3D
G3DSA:3.30.420.10
107 320 214 5.9E-53
IPR036397
SUPERFAMILY
SSF53098
112 294 183 2.47E-19
IPR012337
SMART
SM00479
117 299 183 0.0018
IPR013520
CDD
cd06133
118 294 177 9.77714E-55 –
Pfam
PF00929
122 290 169 3.5E-14
IPR013520

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0044500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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