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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0045500 |
| Transcript ID | LotjaGi3g1v0045500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein yippee-like; TAIR: AT5G53940.1 Yippee family putative zinc-binding protein; Swiss-Prot: sp|Q9FN32|YIPL7_ARATH Protein yippee-like At5g53940; TrEMBL-Plants: tr|I3S5P8|I3S5P8_LOTJA Protein yippee-like; Found in the gene: LotjaGi3g1v0045500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4862561..4866501) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAAAAAGAACATGAAAATCAAATGGAAAAGAAAGTGTAGTGGGAACCGTGGGAAAGTATCCTATTATCCAAAATTAC ACTGCCAATAACAGGGTAACACGTATATCTTTCTTTCTTCCCCTTTGGTCATAATCCTTCATCGCCCTCTTTCACTACTA TGAATTTGCACTTCCAATTGGATTTACTTTGGGGTAGTAAACAGTGAGCGGTGAGTCGGTTGCATCAAAGGGTCTCTCAA AATCGAAGAAAATGGGAAGAATCTTTGCAGTGGAGCTGGAGGGTAGGTCATATGGTTGCAAGTCTTGCAAAACCCACCTG GCACTCGCAGATGATCTCATCTCTCGGGTACCATTTACCTCTTTTCTCATCAAATTTAGTTAAAAATACTGTATTTTTAT CTGATAATGTTGTGTGTGAGCTCAACTGTTTGTGAACTAGCCATGAATGAAGAACATCATCAATTTTGTTTTTTTTCAGG TTTGGAAGAACATTATTTGATTTTTATCTCGTTTTTCTTATGTTGTTATATGAAAATTTACTGTCTTTCTTATGTTGGGT ATGCAAGCTTTGATAATCAAGTGCTAGAAACATGACCCCTGGTTGGAAAAAATCAAATTTTGATAAATTGGGTATGTAAG AGTCTATTGTATATGCTAAGTGGGGTGTGAAGTCTTTACATTTATAGTAGTAGTCAGATTAGTATAGAATCTTGTTTGGC ACTTGTAGTTAGATGAGTACATCCTTTTAAACATGGGTGAATTTTTCAGGGATTAGTTTCACATAAAACTCACCCCTACA AATTTTCTAACCCTTTTTTGTGGGCTGTACCTAACTGACCCTTATAACCCAGAAGGTTGTACCTTGACTACTGTATCCTT GAACATTTCTGATTTCTATCCTTCCGAGTTAAGTCTAGATGACAAGGTTATTAATTTCTAAACCCAGTGATAATGTATCA TCATCATCTAAATCTTTTTTCCCTCTAGATGGGTTGGCTATATAAATCAGTCTATGCAATAATACTATGTTGTATATTAA CTTATTAAGTCTACAGATATACTATTGACCTCTAAGTCCCTCTTAATGACCTGCCCTATGGTTTTCCCAACTCTCCCTCC GCCTCTAACCACCGGCAAGTCTGGTGATAGCATTTACTTTACACTATAAAAGGTCCCTATTGAATAAGGCTGTTTTTAAT TTAACAATTCCAAGCGAGGTGCTAGAAAATGGATTGATCTGCTTTTGCTAAATAAGTTAGAAAAACATGCGTTTTGAAGT CCTAATCAATGGCAACAAGTGCTTCTTGAGTCTGACTGGGGGGTCATTCGAATTAATCTATCATAACGACTTGCAATTAG AAGTTTCATAAAGGGTTATGTTTCTTATTATTCTGGCAAACTGTACACTTAATATAACTCTGGAGATCTTTTGTGTCGTA CCATCTTTTCAACTCTTAGGTAAGTTATCTTTTACAAACCTCCTCTGCTTCTCTTTTTCATTCTCAGTAGCATTCCATGG AAGCTTCTACCTCCATTGAAAAAACAACAAACTCATAATGCCTATCTGGTATAAACAAATGGCTTATAAATAATTTTATT CAGCAATTGTCACGATGACCTTTGTGCTGAGTGGGGGTTACCTAGTATAGTATATTAGTATGTAATAGGCTAGTCCTCCA TTTCTTTATCTGTTATTATAGTAGAAGGGTACTTAATAACTATGTTGACCGAAAATCCTATTTACAAATACCGGTGCTTT GTTGGATGAATCATTGATATCATTCACTTTGATCCTTTTGCTGTTCAATCCTGCTTATGGATAAATCAAAGATATGTTGA TGTGATTGCAACTTGTGGTCAGGAGAGTGAAGTTCACTTCTATAATTGCATTGAAGACAAATTTTCAAATAAGAAAATCA TTGGATAAAACACCACAGGTTGATATTCTCAGAGGTGTACTCAGTAACTGTCCTCAGCCAGTATGTTGAGTCAAAATTCT ATAATCGAATAAAGAGAGGGTCCTCTGTAATATTTCTGCAAGAACTAATTTATGTCCTTCTAAGTGTTGACTACATGACT GTTGGATCATTTCTTATAATACCTGATTTTGTATCCATCTTATTGTGGTGGGTGCTTTTTCTTGATTATCACATATTAAG AAGAACTATTTTAATAAATAATAAATAACTACATATACGACATTAAACAGTGCGAGGGAGAATAGCATGACAGCTAATTA TTTTTGTGCTTCTAATTGAATGCATCATCTCTGCCTTGTTTGTCTTTCTCGATTTCTGTCATTGTATTATTTTAACTGTT CTGCTGGATTCTTAAATGAGTTCTCAATCTTAATATTTGATTACAATTCTTGCCAGGGATTTTATTGCCAGCGGGGAAAA GCATACCTCTTCAATAATGTGTGAGTATTTTTCAGTTCTTATTGGTTAATCCAACCATTAGTGAGGACAGTGAAGGGAAT CATGCATTTTAAATGCTAGTTCCCGACTCTTTTGCTCCTGAAATTATTAATATACAGAAGGCATGCATGATTGAAAGGAT TTTATTTGATGTATTAAAACTTATAACATGATATCCATGTGCTAATGACTTAGGCATCTAAAAGGGGGAAAAACTATTAA TGAGCCAGTCAGTTCAACTCCTTGTGCATAATCCTTTTTTTTATATAAAGTCATGGTTTGACATTACACTCCCTAATTCA CTTATTTGTACCTTATTGTCAATAAAAATTACAAATAGATTTAAGCCCTCTTTCCTATCAGAGCTATATAGGGAATTGTG AAGATGAAAATATTTCTAGACCTGAATGTTCCACTTCTCATCGGTATGCTTATGTTTTGGCTCCATGATCCAGTGTGAAC TTCACAATTGGAGAGCTAGAGGAAAGGGCGATGCTTTCAGGATTGCACACCGTGGCAGATATTTTTTGCTGTTGCTGTGG ACAAATAATCGGCTGGAAATATGTAATCCTTCTCTTACCCTGTCTCATTTTCATAAATCATATATCTTGAAATAAGTGTT GTTGGTGAGATCTTTTAGAATGTATATTCTGCATGGCGTGGCCAGAATGTTTTTGGTCTAGTCTATCCATTATCCCCATT TTTGTTCCTGCCAACTTCACATCACTTTTTGATCCCTTTAAAATTGTATCTCTCAGGAATCTGCTCATGAGAAGAGCCAA AAGTATAAAGAGGGGAAGTTTGTTCTTGAAAGGTATTATCTCATTTTGTTGTTACAGTTAAGTTATGCTTTATCCTCCAG AGTGTATTCATACTGATTGTGCATGTTTATCAGAGGAAGGATTGTTGATGAAATTGATTTCTCCACTGAATTCCGCGTGG ACAGCTGTATCAGCATGAGTGATTCTGAAGATGCTTAAGCATATTAAAATCATCTGTACTTGTTGAATCAGGTGAAAGAA GCGTTGTTGTGTTATGTGAAAAATAAGGTAGAACCATGAATGTGTTCAGAGTCAGAATAAGAGTGAGTTTTTCTTTTTTA CAATTTGTTTGTTGTAGTAGTAGTAGTAAATAGAATGTAGAGTTCTCAATGGTGTGTAATGTCAGTGGACAGAAGGAAAT GAAACCATTTGTTTCAGATTTGCCCCTAGCTCTTTTTCAAACAGAGGCGAGGCTAGAAATGTAACTTAATTTTTTTTCTT TTTATTATATAAGAATCTAATTTTGTTTGTTGGGATTGCCATATCAATGCATAAAGGAATATATAAATAAAATTACGAAG TTAGGGGTGCTATGTTATTGTTAGACTATTGGAAGGCCTAAACTTTCAGGACTTGAACTCAGTGTTTCTTCAACATAATG AATCAAAAATTCACATGTTGAAGAAAATTAAGACTAATTAAATCTTGTGTGGCCTGCTCTAATTAGTTGGATTCTACCAC TTCGGCACTGATATTTGAAGT
CDS sequence (LotjaGi3g1v0045500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAATCTTTGCAGTGGAGCTGGAGGGTAGGTCATATGGTTGCAAGTCTTGCAAAACCCACCTGGCACTCGCAGA TGATCTCATCTCTCGGGGATTTTATTGCCAGCGGGGAAAAGCATACCTCTTCAATAATGTTGTGAACTTCACAATTGGAG AGCTAGAGGAAAGGGCGATGCTTTCAGGATTGCACACCGTGGCAGATATTTTTTGCTGTTGCTGTGGACAAATAATCGGC TGGAAATATGAATCTGCTCATGAGAAGAGCCAAAAGTATAAAGAGGGGAAGTTTGTTCTTGAAAGAGGAAGGATTGTTGA TGAAATTGATTTCTCCACTGAATTCCGCGTGGACAGCTGTATCAGCATGAGTGATTCTGAAGATGCTTAA
Protein sequence (LotjaGi3g1v0045500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRIFAVELEGRSYGCKSCKTHLALADDLISRGFYCQRGKAYLFNNVVNFTIGELEERAMLSGLHTVADIFCCCCGQIIG WKYESAHEKSQKYKEGKFVLERGRIVDEIDFSTEFRVDSCISMSDSEDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 129 | 129 | 1.4E-72 | – | |
| PANTHER | 1 | 129 | 129 | 1.4E-72 | ||
| ProSiteProfiles | 12 | 109 | 98 | 49.011 | ||
| Pfam | 15 | 105 | 91 | 5.8E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0045500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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