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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0046000 |
| Transcript ID | LotjaGi3g1v0046000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/Threonine-kinase WNK (WNK)-like protein; TAIR: AT5G53900.2 Serine/threonine-protein kinase WNK (With No Lysine)-like protein; Swiss-Prot: sp|Q58G01|LHWL3_ARATH Transcription factor bHLH155; TrEMBL-Plants: tr|I3T1Z6|I3T1Z6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0046000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4907279..4910332) extracted from Lotus japonicus Gifu genome v1.2.
CGCGTATGTCATGAACCTTCGCGTTCAAATATGAGGGGCCTTCATGAATATTCTAATCCTCAGATTAGGAATCTCTCTGA CTACTTTTTGGACGTGAATGTAGGAATCTCTCCATATTAAGCGGTAAAGGTACACAATTTGGGCCATGAGAAAAACCCAA AGTCACAACTCTCCCCGAAGACTTGCACCGCCAGAAGAATTTTCTGGCAGATGACAAAGGGTAAAACTGTGAAATAAGCA TCCTCTTTCCCTCCCACTATGCTTTTTTCTTTCCTTTCCCCATTCTCTATGTTGTGCTTTGCAGCAAGAGACAGAAAGAA AGGATAAAAACTGCGCCCACAGAGATTTTCATGTGCTAAGATACTCACAAGTCAGTGAAGTCACAACACTAAGCACTTGC CAAAGCAACCTCGTTAGGGACAAACAAAAGCAGAGTGTAGAGTTGCTGAGATTGAAAAAATATGAGAGTTTCGAGAATAG AATAAAGAATGAAAGAAAGAAAATAAAAGAGACCAGATTCAGACAATACATAGAGAAAGATAAAGAGAACAAAAGATCCA TATGTGAAGAGAAAGATAGAGAGAGATAGTGAGAGAGAAAGAGAGAAAGAGATGGTGGGCTCAGGAACAACATCAGATAG GAGCAAAGAAGCTGTAGGGATGATGGCCCTTCATGAGGCCCTTAGAAGCGTATGTCTCAACTCAGATTGGAATTACTCTG TCTTCTGGACCATTCGTCCTCGCCCGTATGCTTCTCTCTCTCTCTATATATATATGTTTTGTGCTTCTTTGAATGCTATG GTTTGAGACTTTGAGGTGTTTTCTCAACTGGGTCTTCCCCATTTTTCTTGCAGAAGGGTCAGAGGTGGCAGTGGGTGCAA GGTTGGGGATGATAATGGCAGCTTGTAAGTATGGTGAAAACAGAGTGAAGTCTCTGTTGGTGTATACTATTGTTGACTTG ATTCCAAAACTGATGATATTTTTAGCAATTTTTGATTCTGGGTATTGATAATTCAGTGTTTTTCAAATTTGGTGAAGGAT GTTGATGTGGGAAGATGGGTTTTGCCGTGGAAGCGATTTAGACTGCCTGGAAGAGATTGATGGAGAGGATCCAATCAGAA AATCCTTCAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGGGTGGGTAATGGGTAGGTCTTTATTTTGTGTTGTA TGTGGTTTCTATTTTCATATCTACCTATGTTCCTCTTTCTCTTTCTCTTTCTAATCTTCATTATTTCAATACCATGTTGG AGGGAGTTACTCACAAGTCACAACTTACAAGTACAATTTCTAATCTTCAATATTGGAAACAGGTTGATGGGAAAGGTTAC ATCTGATAAGTGCCACAAGTGGGTCTTCAAAGAGCCCACAGAAAGTGAGCCTGATATCTCCAACTACTGGCAGAGCTCCT TTGATGCTGTATGCATTTGAACCCTCTCATTCAATAACTTTTTGATCTCTTTGTTTTATTCCTTTCCCTTAAGATATAGA TTTTGATTCCCATCCCAAGATTCAACTAGCACAGAATCTAGCATTAAATTTAGTCTCTTCTCTTGATTATGTGTAGCTGC AATTAATTGTCTAAGAACTTAATGCCTTTGTCACAATTGATCTTTGTAAATTGATTATTGTAAAAGTAAGTTGAAAGTGA AGTGATTTATGTTTGGATGCATATATGAAAGTTATTTTTGTTGAGTAATGTTGTTAAATCTCAATTGATTATATGTTCAA CGCAGAAGCTATTCTCTCTAGCTTCTATCAGAATTGATTTTTGATATGAAATCAATTCTCTCAAATGACTCACAAACATC AATATTTTCATCCGGAATTGATTTTAATGATGTTATTTATTGCAGCTTCCACCTGAATGGATCGATCAGTTTGAGTCAGG CATTCAGGTCAGTCAGAACAGAATGAATGAATTAATATCATGCTCCTTTTGTGAACCCTCCAAGGGTTAACCATTTCATA TACTTATATTTTGTTTACATTTATTCCATGGCCAGACAATTGCTGTAATTCAAGCTGGGCATGGCCTTCTACAACTTGGC TCTTGCAAGATTGTGAGTAAATTTGGACATGACAATTTCTTAACACACCCACATATTCATAGTTTTCATTTGTATATGTG TTTCTCACACTCCCACAGAATTATCAAATGTTTGATATTTTTACTTCTATATATTCTCAGATTCCTGAAGATCTCCATTT CGTGCTAAGAATGAGGCACACTTTTGAATCTCTACGATATCAATCTGGCTTCTACCTCTCCCAACTTTTCTCTTCAACTA GGAACACTTCCTCTCCTACTTCAGTTCCTTCAAGACCATCCAACATTCCAATTAGCCCAACTCCTTCACTCCTCAACTGG AGTCAGAGGCCTCTTGGTTCTGCTACTTCTATGCTATCCTCACCAGGTTTTCAACATATGGGGTGCCCACAGGCCAAAGA TGAGACTCATATGTTTCTCATGCCTCATGCATCTGAAGCTGCAAAAAGAGAAGACATGATGGGGGAGCATGAAAACAACA TGAAGTGGCTAAATGGGTATTCCTCCTTCACTGCACCTGATCGAGTGGCTTCTTCATCCTCTTCTATTTCAGTGGATCAC CATCAAGCTGTGGAGTATAGGAATTCAGGAGGAGGTATATACACGAATGTCATGGAAACCTTTCTAGAGTGAATGAGGGT GAAAGGTGAGTTTGTGTTAGGAAAAATGAAGGATGGTGTAGTTGCTTATTTAGGAAAAGTTATTTGTGTTCCTTTTCAGG TGTTTGCTTTCTTCCTCTTTGTATCATGTGTTTCTGTCATCCATCCACTTAATGAGACTTTATTAAATGATGATTTCTCT TTTCTTAGTTCGATCACACACATGGTGAATCTTACTATCTTCCTATAAGGTTATATCAAATGGATTAAGGAATATCATTT GATGTTATAGTTTTATTAAAATTACTATTTAACTTCCTAACATACCCTTTATCTCTCTTATTAATTATGTCTTTTCAATT CTTTTACCACTAAT
CDS sequence (LotjaGi3g1v0046000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGGCTCAGGAACAACATCAGATAGGAGCAAAGAAGCTGTAGGGATGATGGCCCTTCATGAGGCCCTTAGAAGCGT ATGTCTCAACTCAGATTGGAATTACTCTGTCTTCTGGACCATTCGTCCTCGCCCAAGGGTCAGAGGTGGCAGTGGGTGCA AGGTTGGGGATGATAATGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGTGGAAGCGATTTAGACTGCCTGGAA GAGATTGATGGAGAGGATCCAATCAGAAAATCCTTCAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGGGTTGAT GGGAAAGGTTACATCTGATAAGTGCCACAAGTGGGTCTTCAAAGAGCCCACAGAAAGTGAGCCTGATATCTCCAACTACT GGCAGAGCTCCTTTGATGCTCTTCCACCTGAATGGATCGATCAGTTTGAGTCAGGCATTCAGACAATTGCTGTAATTCAA GCTGGGCATGGCCTTCTACAACTTGGCTCTTGCAAGATTATTCCTGAAGATCTCCATTTCGTGCTAAGAATGAGGCACAC TTTTGAATCTCTACGATATCAATCTGGCTTCTACCTCTCCCAACTTTTCTCTTCAACTAGGAACACTTCCTCTCCTACTT CAGTTCCTTCAAGACCATCCAACATTCCAATTAGCCCAACTCCTTCACTCCTCAACTGGAGTCAGAGGCCTCTTGGTTCT GCTACTTCTATGCTATCCTCACCAGGTTTTCAACATATGGGGTGCCCACAGGCCAAAGATGAGACTCATATGTTTCTCAT GCCTCATGCATCTGAAGCTGCAAAAAGAGAAGACATGATGGGGGAGCATGAAAACAACATGAAGTGGCTAAATGGGTATT CCTCCTTCACTGCACCTGATCGAGTGGCTTCTTCATCCTCTTCTATTTCAGTGGATCACCATCAAGCTGTGGAGTATAGG AATTCAGGAGGAGGTATATACACGAATGTCATGGAAACCTTTCTAGAGTGA
Protein sequence (LotjaGi3g1v0046000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGSGTTSDRSKEAVGMMALHEALRSVCLNSDWNYSVFWTIRPRPRVRGGSGCKVGDDNGSLMLMWEDGFCRGSDLDCLE EIDGEDPIRKSFSKMSIQLYNYGEGLMGKVTSDKCHKWVFKEPTESEPDISNYWQSSFDALPPEWIDQFESGIQTIAVIQ AGHGLLQLGSCKIIPEDLHFVLRMRHTFESLRYQSGFYLSQLFSSTRNTSSPTSVPSRPSNIPISPTPSLLNWSQRPLGS ATSMLSSPGFQHMGCPQAKDETHMFLMPHASEAAKREDMMGEHENNMKWLNGYSSFTAPDRVASSSSSISVDHHQAVEYR NSGGGIYTNVMETFLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 298 | 298 | 1.8E-192 | – | |
| PANTHER | 1 | 298 | 298 | 1.8E-192 | – | |
| Pfam | 20 | 74 | 55 | 4.4E-10 | ||
| Pfam | 88 | 188 | 101 | 8.5E-18 | ||
| MobiDBLite | 205 | 229 | 25 | - | – | |
| PANTHER | 295 | 336 | 42 | 1.8E-192 | – | |
| PANTHER | 295 | 336 | 42 | 1.8E-192 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0046000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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