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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR025610
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 46 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.777s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0068479.1
n.a. PREDICTED: transcription factor LHW-like isoform X1 [Cicer arietinum] gi|502083407|ref|XP_004487450.1| chr0 24494095 24501298 +
2 domain predictions
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Lj0g3v0068479.2
n.a. PREDICTED: transcription factor LHW-like isoform X1 [Cicer arietinum] gi|502083407|ref|XP_004487450.1| chr0 24494365 24503712 +
2 domain predictions
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Lj0g3v0237069.1
n.a. PREDICTED: transcription factor MYC2-like [Cicer arietinum] gi|502154512|ref|XP_004509726.1| chr0 122864160 122864980 +
2 domain predictions
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Lj0g3v0264259.1
n.a. PREDICTED: transcription factor MYC2-like [Cicer arietinum] gi|502154512|ref|XP_004509726.1| chr0 136982810 136983631 +
2 domain predictions
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Lj0g3v0341569.1
n.a. Serine/threonine-protein kinase WNK-related isoform 4 [Theobroma cacao] gi|508721179|gb|EOY13076.1| chr0 179016632 179019596 -
2 domain predictions
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Lj0g3v0341569.3
n.a. Serine/threonine-protein kinase WNK-related isoform 1 [Theobroma cacao] gi|508721176|gb|EOY13073.1| chr0 179016632 179019596 -
2 domain predictions
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Lj0g3v0343449.1
n.a. PREDICTED: transcription factor MYC2-like [Cicer arietinum] gi|502154512|ref|XP_004509726.1| chr0 180040204 180042638 +
2 domain predictions
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Lj1g3v0131270.1
n.a. Serine/threonine-protein kinase WNK-related isoform 1 [Theobroma cacao] gi|508721176|gb|EOY13073.1| chr1 1778733 1781186 +
2 domain predictions
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Lj1g3v1686740.1
n.a. Serine/threonine-protein kinase WNK-related isoform 1 [Theobroma cacao] gi|508722478|gb|EOY14375.1| chr1 20022927 20025372 -
2 domain predictions
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Lj1g3v3444270.1
n.a. PREDICTED: transcription factor bHLH155-like [Cicer arietinum] gi|502179450|ref|XP_004516433.1| chr1 39950381 39961600 +
2 domain predictions
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Lj1g3v4480280.1
n.a. n.a. chr1 52432656 52436841 -
2 domain predictions
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Lj1g3v4480290.2
n.a. PREDICTED: transcription factor bHLH3-like [Cicer arietinum] gi|502109918|ref|XP_004493757.1| chr1 52432769 52436045 +
2 domain predictions
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Lj2g3v1378830.1
n.a. Serine/threonine-protein kinase WNK-related [Theobroma cacao] gi|508708521|gb|EOY00418.1| chr2 21760447 21762631 +
2 domain predictions
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Lj2g3v1468530.1
n.a. PREDICTED: transcription factor MYC2-like [Glycine max] gi|356497663|ref|XP_003517679.1| chr2 23505679 23509193 -
2 domain predictions
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Lj2g3v1468540.1
n.a. PREDICTED: transcription factor MYC2-like [Glycine max] gi|356497663|ref|XP_003517679.1| chr2 23506992 23509193 -
2 domain predictions
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Lj3g3v1262250.1
n.a. PREDICTED: transcription factor LHW-like [Cicer arietinum] gi|502145882|ref|XP_004506222.1| chr3 16327999 16331695 -
2 domain predictions
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Lj3g3v2948510.1
n.a. PREDICTED: transcription factor LHW-like [Cicer arietinum] gi|502145882|ref|XP_004506222.1| chr3 36678618 36686587 +
2 domain predictions
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Lj5g3v0294880.1
n.a. Serine/threonine-protein kinase WNK-related isoform 2 [Theobroma cacao] gi|508722479|gb|EOY14376.1| chr5 2634044 2636423 -
2 domain predictions
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Lj5g3v0975560.1
n.a. bHLH transcription factor LjTT8 [Lotus japonicus] gi|224994136|dbj|BAH28881.1| chr5 15018168 15022466 +
2 domain predictions
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Lj5g3v1237800.1
n.a. PREDICTED: transcription factor bHLH157-like [Cucumis sativus] gi|449456927|ref|XP_004146200.1| chr5 20024421 20026124 +
2 domain predictions
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Lj5g3v2244610.1
n.a. PREDICTED: transcription factor ABORTED MICROSPORES-like [Glycine max] gi|356534418|ref|XP_003535752.1| chr5 32509814 32512850 +
2 domain predictions
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Lj6g3v0673230.1
n.a. PREDICTED: transcription factor bHLH90-like [Glycine max] gi|356524045|ref|XP_003530643.1| chr6 6695357 6698846 +
2 domain predictions
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LotjaGi1g1v0357700.1
n.a. Serine/threonine-protein kinase WNK-related; TAIR: AT1G60060.1 Serine/threonine-protein kinase WNK (With No Lysine)-like protein; Swiss-Prot: sp|P0C7P8|LHWL1_ARATH Transcription factor EMB1444; TrEMBL-Plants: tr|I1K821|I1K821_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0357700 LjG1.1_chr1 83148902 83151565 -
2 domain predictions
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LotjaGi1g1v0357700.2
n.a. Serine/threonine-protein kinase WNK-related; TAIR: AT1G60060.1 Serine/threonine-protein kinase WNK (With No Lysine)-like protein; Swiss-Prot: sp|P0C7P8|LHWL1_ARATH Transcription factor EMB1444; TrEMBL-Plants: tr|I1K821|I1K821_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0357700 LjG1.1_chr1 83148904 83151304 -
2 domain predictions
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LotjaGi1g1v0579800.1
n.a. Transcription factor-related family protein; TAIR: AT2G31280.1 transcription factor bHLH155-like protein; Swiss-Prot: sp|Q58G01|LHWL3_ARATH Transcription factor bHLH155; TrEMBL-Plants: tr|K7MT84|K7MT84_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0579800 LjG1.1_chr1 111916787 111929862 +
2 domain predictions
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LotjaGi1g1v0579800.2
n.a. Transcription factor-related family protein; TAIR: AT2G31280.1 transcription factor bHLH155-like protein; Swiss-Prot: sp|Q58G01|LHWL3_ARATH Transcription factor bHLH155; TrEMBL-Plants: tr|K7L1I8|K7L1I8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0579800 LjG1.1_chr1 111916910 111928287 +
2 domain predictions
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LotjaGi1g1v0710500.1
n.a. BHLH transcription factor-like protein; TAIR: AT1G06150.2 basic helix loop helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|P0C7P8|LHWL1_ARATH Transcription factor EMB1444; TrEMBL-Plants: tr|A0A151TUG4|A0A151TUG4_CAJCA Putative basic helix-loop-helix protein family; Found in the gene: LotjaGi1g1v0710500 LjG1.1_chr1 127885278 127892633 +
2 domain predictions
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LotjaGi1g1v0712100.1
n.a. Basic helix-loop-helix (BHLH) family transcription factor; TAIR: AT4G16430.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O23487|BH003_ARATH Transcription factor bHLH3; TrEMBL-Plants: tr|A0A072UDK3|A0A072UDK3_MEDTR ABA-inducible bHLH-type transcription factor; Found in the gene: LotjaGi1g1v0712100 LjG1.1_chr1 128010081 128012613 -
2 domain predictions
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LotjaGi2g1v0318000.1
n.a. Serine/threonine-protein kinase WNK-related; TAIR: AT1G60060.1 Serine/threonine-protein kinase WNK (With No Lysine)-like protein; Swiss-Prot: sp|P0C7P8|LHWL1_ARATH Transcription factor EMB1444; TrEMBL-Plants: tr|I3S0D7|I3S0D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0318000 LjG1.1_chr2 79295926 79298514 +
2 domain predictions
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LotjaGi2g1v0332700.1
n.a. Basic helix-loop-helix transcription factor protein; TAIR: AT1G32640.1 Basic helix-loop-helix (bHLH) DNA-binding family protein; Swiss-Prot: sp|Q39204|MYC2_ARATH Transcription factor MYC2; TrEMBL-Plants: tr|C0JP19|C0JP19_LOTJA Putative basic helix-loop-helix protein BHLH22; Found in the gene: LotjaGi2g1v0332700 LjG1.1_chr2 80873266 80876164 -
2 domain predictions
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LotjaGi3g1v0046000.1
n.a. Serine/Threonine-kinase WNK (WNK)-like protein; TAIR: AT5G53900.2 Serine/threonine-protein kinase WNK (With No Lysine)-like protein; Swiss-Prot: sp|Q58G01|LHWL3_ARATH Transcription factor bHLH155; TrEMBL-Plants: tr|I3T1Z6|I3T1Z6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0046000 LjG1.1_chr3 4907279 4910332 +
2 domain predictions
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LotjaGi3g1v0156400.1
n.a. Serine/Threonine-kinase WNK (WNK)-like protein; TAIR: AT5G53900.2 Serine/threonine-protein kinase WNK (With No Lysine)-like protein; Swiss-Prot: sp|Q58G01|LHWL3_ARATH Transcription factor bHLH155; TrEMBL-Plants: tr|I1M358|I1M358_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0156400 LjG1.1_chr3 21376036 21379476 +
2 domain predictions
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LotjaGi3g1v0156400.2
n.a. Serine/Threonine-kinase WNK (WNK)-like protein; TAIR: AT5G53900.1 Serine/threonine-protein kinase WNK (With No Lysine)-like protein; Swiss-Prot: sp|Q58G01|LHWL3_ARATH Transcription factor bHLH155; TrEMBL-Plants: tr|I1M358|I1M358_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0156400 LjG1.1_chr3 21376170 21378968 +
2 domain predictions
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LotjaGi3g1v0182500.1
n.a. BHLH transcription factor-like protein; TAIR: AT2G27230.1 transcription factor-like protein; Swiss-Prot: sp|Q9XIN0|LHW_ARATH Transcription factor LHW; TrEMBL-Plants: tr|K7LVT9|K7LVT9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0182500 LjG1.1_chr3 25493668 25500976 -
2 domain predictions
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LotjaGi3g1v0383100.3
n.a. Basic helix-loop-helix transcription factor; TAIR: AT5G41315.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3; TrEMBL-Plants: tr|D7UPI5|D7UPI5_LOTJA BHLH transcription factor LjTAN1; Found in the gene: LotjaGi3g1v0383100 LjG1.1_chr3 77705361 77711575 -
2 domain predictions
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LotjaGi3g1v0383100.4
n.a. Basic helix-loop-helix transcription factor; TAIR: AT5G41315.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3; TrEMBL-Plants: tr|D7UPI5|D7UPI5_LOTJA BHLH transcription factor LjTAN1; Found in the gene: LotjaGi3g1v0383100 LjG1.1_chr3 77705361 77711575 -
2 domain predictions
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LotjaGi3g1v0383100.5
n.a. Basic helix-loop-helix transcription factor; TAIR: AT5G41315.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3; TrEMBL-Plants: tr|D7UPI5|D7UPI5_LOTJA BHLH transcription factor LjTAN1; Found in the gene: LotjaGi3g1v0383100 LjG1.1_chr3 77705402 77711569 -
2 domain predictions
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LotjaGi3g1v0401400.1
n.a. Basic helix loop helix (BHLH) family transcription factor; TAIR: AT4G17880.1 Basic helix-loop-helix (bHLH) DNA-binding family protein; Swiss-Prot: sp|O49687|MYC4_ARATH Transcription factor MYC4; TrEMBL-Plants: tr|A0A0L9VR06|A0A0L9VR06_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0401400 LjG1.1_chr3 80392961 80395734 +
2 domain predictions
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LotjaGi3g1v0471800.1
n.a. BHLH transcription factor-like protein; TAIR: AT2G27230.1 transcription factor-like protein; Swiss-Prot: sp|Q9XIN0|LHW_ARATH Transcription factor LHW; TrEMBL-Plants: tr|K7LTX1|K7LTX1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0471800 LjG1.1_chr3 88847714 88857004 +
2 domain predictions
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LotjaGi4g1v0166800.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G10610.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q0WNR2|BH090_ARATH Transcription factor bHLH90; TrEMBL-Plants: tr|V7C6I7|V7C6I7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0166800 LjG1.1_chr4 31796333 31799536 -
2 domain predictions
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LotjaGi4g1v0171400.1
n.a. Basic helix-loop-helix transcription factor protein; TAIR: AT1G32640.1 Basic helix-loop-helix (bHLH) DNA-binding family protein; Swiss-Prot: sp|Q39204|MYC2_ARATH Transcription factor MYC2; TrEMBL-Plants: tr|A0A151QWJ5|A0A151QWJ5_CAJCA Transcription factor MYC2; Found in the gene: LotjaGi4g1v0171400 LjG1.1_chr4 33673697 33676624 +
2 domain predictions
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LotjaGi4g1v0426800.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT5G41315.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3; TrEMBL-Plants: tr|D7UPI4|D7UPI4_LOTJA BHLH transcription factor; Found in the gene: LotjaGi4g1v0426800 LjG1.1_chr4 80165044 80168546 +
2 domain predictions
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LotjaGi5g1v0030400.1
n.a. Serine/threonine-protein kinase WNK; TAIR: AT1G60060.1 Serine/threonine-protein kinase WNK (With No Lysine)-like protein; Swiss-Prot: sp|Q58G01|LHWL3_ARATH Transcription factor bHLH155; TrEMBL-Plants: tr|I1MXL2|I1MXL2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0030400 LjG1.1_chr5 4910376 4912567 -
2 domain predictions
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LotjaGi5g1v0166100.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT4G09820.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|E3SXU4|BHLHW_PEA Basic helix-loop-helix protein A; TrEMBL-Plants: tr|C0A1H0|C0A1H0_LOTJA BHLH transcription factor LjTT8; Found in the gene: LotjaGi5g1v0166100 LjG1.1_chr5 42419174 42429020 +
2 domain predictions
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LotjaGi5g1v0199100.1
n.a. Transcription factor-related family protein; TAIR: AT2G27230.1 transcription factor-like protein; Swiss-Prot: sp|Q9XIN0|LHW_ARATH Transcription factor LHW; TrEMBL-Plants: tr|A0A0B2P6Z8|A0A0B2P6Z8_GLYSO Putative basic helix-loop-helix protein; Found in the gene: LotjaGi5g1v0199100 LjG1.1_chr5 49679041 49683994 +
2 domain predictions
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LotjaGi5g1v0348900_LC.1
n.a. Basic helix-loop-helix (BHLH) Transcription Factor; TAIR: AT2G16910.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES; TrEMBL-Plants: tr|A0A151TQ27|A0A151TQ27_CAJCA Transcription factor ABORTED MICROSPORES; Found in the gene: LotjaGi5g1v0348900_LC LjG1.1_chr5 66463250 66464368 +
2 domain predictions
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