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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0049900 |
| Transcript ID | LotjaGi3g1v0049900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Epidermal patterning factor, putative; TAIR: AT2G20875.1 epidermal patterning factor 1; Swiss-Prot: sp|Q8S8I4|EPF1_ARATH Protein EPIDERMAL PATTERNING FACTOR 1; TrEMBL-Plants: tr|K7LUZ7|K7LUZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0049900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5211484..5212637) extracted from Lotus japonicus Gifu genome v1.2.
TGTAATTATCATCATATTAGCATTTTGCTTGAACTTGACCTAATTAATAATATACATATACCAATGTCAATGAGTGTTTC TCTCTGCATTGCAACATTTCTCATGTCGTTCCTTATTTGGGGTACCATCTTTGCCGCACAAATAGCTTCGCCAAGCTCAA GATTATATGTTGGTAGTGATCATAGCATAAGAAAAGGTGCATGTGAATGAATTGTGTACTTCTTTTTTCTTTCTTTAATT TTAATTTGTTGTTGGATTTTATAAACGAAAATGATTTTTAAACTGCTGCACAATTTTAGCATTTAATCAACATATGCGAG TTCTAACCGTCCCAGATAAAAGATACCGTGAAAATTACAAAAATAGCTACTAGCAACTACAATTCGGTCAGAACTCAGAA TATATTTTTCAACATACACTCAGTGTTTTAATTCCTGAAATGCATTTTTAAGAAACACATTTCGAATTTTAGTTCCTGCC CACAATTTGTTTTGTGGCAATGCACATATTGCTCCCAAAGGTCTCTCTTGTATGTCCAAATAACAGTTCCTTGTTCATAT ATCTTGATATATAATGCATGTCGTTCTGTGGCAGTTGGCGAAATTAAATATGCAAGCTCAACTAAGATGGAGAATCCGTT GGGGCATGAGAGGAGCGAAATTAAGGTAGGAAGTACGAGGGGTAGAACACTTGAAATTGCTGCAGGTTCAAGACTACCAG ATTGCTTGCACGCTTGTGGTTCGTGCTCCCCTTGTACCTTAGTAATGGTTAGCTTAGCTTGTCCTTCACATGTTGATGAT GCTGAGTCATGCCCTGTTTCTTATCGATGCATGTGTAAGAGTAAATCCTACCCGGTACCATGAACTATTTGTGTGCCTCT TCCTTACCCTCTCCTACCCATTCCAATCATAGCTAGTTTGCTACTAAGGTTTCTTTGAATTGCTGAGTCAAATATATGTA ATGATATTTTGTAGCTAAGAAATGTTATAATATGTAAATTAAGGGTAGTTTAGTTTGATTAACTTCAAATCAGATTTTGA TTTTAATATTGTTTTTGTAATAAATATTCCTGTTATGTAAATTGTAAGAAATAGTGATGGCACTCCACAAGAACGTCCAT AACTCGATTTCTTGCGAAAAGCATTTCATTGGGA
CDS sequence (LotjaGi3g1v0049900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATGAGTGTTTCTCTCTGCATTGCAACATTTCTCATGTCGTTCCTTATTTGGGGTACCATCTTTGCCGCACAAAT AGCTTCGCCAAGCTCAAGATTATATGTTGGTAGTGATCATAGCATAAGAAAAGTTGGCGAAATTAAATATGCAAGCTCAA CTAAGATGGAGAATCCGTTGGGGCATGAGAGGAGCGAAATTAAGGTAGGAAGTACGAGGGGTAGAACACTTGAAATTGCT GCAGGTTCAAGACTACCAGATTGCTTGCACGCTTGTGGTTCGTGCTCCCCTTGTACCTTAGTAATGGTTAGCTTAGCTTG TCCTTCACATGTTGATGATGCTGAGTCATGCCCTGTTTCTTATCGATGCATGTGTAAGAGTAAATCCTACCCGGTACCAT GA
Protein sequence (LotjaGi3g1v0049900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMSVSLCIATFLMSFLIWGTIFAAQIASPSSRLYVGSDHSIRKVGEIKYASSTKMENPLGHERSEIKVGSTRGRTLEIA AGSRLPDCLHACGSCSPCTLVMVSLACPSHVDDAESCPVSYRCMCKSKSYPVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 7 | 19 | 13 | - | – | |
| PANTHER | 8 | 133 | 126 | 8.6E-33 | – | |
| PANTHER | 8 | 133 | 126 | 8.6E-33 | ||
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 133 | 109 | - | – | |
| Pfam | 81 | 131 | 51 | 4.5E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Stomatal complex development | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. |
Expression pattern of LotjaGi3g1v0049900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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