Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0050600 |
| Transcript ID | LotjaGi3g1v0050600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor; TAIR: AT2G45050.1 GATA transcription factor 2; Swiss-Prot: sp|O49741|GATA2_ARATH GATA transcription factor 2; TrEMBL-Plants: tr|I1JMW7|I1JMW7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0050600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5270472..5271944) extracted from Lotus japonicus Gifu genome v1.2.
TTAGCGTTGCTTATCATGTCTACATTCAGTTCAACTTAAATTTTCTTTCTTTTCTTAATTTTCTCTCTCTTAATGAGAGT GCGTGTTGTTCACTGTTCTGTTCTGTTTGTTTATAGTATGAGTGCATGCTATGCTCACACTCTCACTGTCTCACTCCTCA GCACGTTCCTTTGCCCCCTCTCCATCAATATATCAATCCATCATCATCCCCCACTTCTCCAAAACAAACAAACAAAACTT TCCATCTCTCTCTTTCACTCCAACTCAAAGCATAACGACAATGGACATGTACGGTTCCCTTTCCAACCCTCCAGATCGCC GACGCAATATAGATGATTTTCTAGACTTCTCTCACAACCACCTCCCTCCCCCTCAACACTCTTTCTCCGATCAATTCTCC GGCGACCCCAATTTCTTCTCCAATTTCCCCTCCGTCCCCGTAAGACTCTTCATTTCAATTCGCACCATTTTATTTTCTAC TTATAAATTAGTTTTTTCTGCGTTAAATTGTTTTCGCAATTACGACTCTGGTTTGATGAATAATAAAAATCGAACTCTCG ACTTAAGATTCAAATAGAATCGAACTCTTAACCTATAGTTCGAACAATCACTTTTAATTACTACGACCGACCTTCATTAA ATTTATATTTATATTTTATTTTATTTTAATTTTACAGAGGGATGAAGCAGCAGAGCTGGAATGGCTATCACATTTCGTCG ATGATACGACGTCGTTTCACGATCTCCCACCGAGCCACGCCATTCCCATGGGATCTCAAACGACGTCGTTTCTCAGCAAC AACAACGATGAAGGTGAGAAGAGCAATAGTTGTTACCGCAATTCCTCAGATGTGATTGCATCGGTGACCGGAAAGTCGAG ATCGAAGAGGGCGGCGGCGGTTGAAGGGTCACCGGCGGGGGAGGGAGGAGTACGGAGGTGCAGCCACTGCGCATCGGAGA AGACGCCGCAATGGCGAACAGGACCGCTGGGGCCGAAGACACTCTGCAACGCGTGCGGTGTGAGGTTCAAGTCGGGTCGG CTCGTGCCGGAATACCGACCCGCCGCGAGCCCCACGTTCGTGCTGTCTCAGCACTCGAACTCTCACCGCAAAGTCATGGA ACTCCGTCGTCAGAAGGAGCTGATCCGCCACCAACAACAGCCGCAGCAGCAGCAGCAGCAGTGCTATCTTCACAAGCAAG ATTTCAAAGTGTGCTGACGTGTCCATTGTCGGTGCTCTCTCTTTGTTTTTTATTTTTTTTATATATGGCTACTATATTAG GTGTGTATCAATATCATTATTTACCCAATGTGTTGCTCAATAATCGTTACCAAGTTACCCCCAACGGTGAAACAGAATTA TTTGTTTCGTGGGTTTTTTTAGGGTTCTTTGATGTTTGTTACATAGGAGGCTCTATGATTTGAAAAATTGAGTAAAATTA AATTTTGGGTTTCTTCTCTAATTAACATTTCCC
CDS sequence (LotjaGi3g1v0050600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCACACTCTCACTGTCTCACTCCTCAGCACGTTCCTTTGCCCCCTCTCCATCAATATATCAATCCATCATCATCCC CCACTTCTCCAAAACAAACAAACAAAACTTTCCATCTCTCTCTTTCACTCCAACTCAAAGCATAACGACAATGGACATGT ACGGTTCCCTTTCCAACCCTCCAGATCGCCGACGCAATATAGATGATTTTCTAGACTTCTCTCACAACCACCTCCCTCCC CCTCAACACTCTTTCTCCGATCAATTCTCCGGCGACCCCAATTTCTTCTCCAATTTCCCCTCCGTCCCCAGGGATGAAGC AGCAGAGCTGGAATGGCTATCACATTTCGTCGATGATACGACGTCGTTTCACGATCTCCCACCGAGCCACGCCATTCCCA TGGGATCTCAAACGACGTCGTTTCTCAGCAACAACAACGATGAAGGTGAGAAGAGCAATAGTTGTTACCGCAATTCCTCA GATGTGATTGCATCGGTGACCGGAAAGTCGAGATCGAAGAGGGCGGCGGCGGTTGAAGGGTCACCGGCGGGGGAGGGAGG AGTACGGAGGTGCAGCCACTGCGCATCGGAGAAGACGCCGCAATGGCGAACAGGACCGCTGGGGCCGAAGACACTCTGCA ACGCGTGCGGTGTGAGGTTCAAGTCGGGTCGGCTCGTGCCGGAATACCGACCCGCCGCGAGCCCCACGTTCGTGCTGTCT CAGCACTCGAACTCTCACCGCAAAGTCATGGAACTCCGTCGTCAGAAGGAGCTGATCCGCCACCAACAACAGCCGCAGCA GCAGCAGCAGCAGTGCTATCTTCACAAGCAAGATTTCAAAGTGTGCTGA
Protein sequence (LotjaGi3g1v0050600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTLSLSHSSARSFAPSPSIYQSIIIPHFSKTNKQNFPSLSFTPTQSITTMDMYGSLSNPPDRRRNIDDFLDFSHNHLPP PQHSFSDQFSGDPNFFSNFPSVPRDEAAELEWLSHFVDDTTSFHDLPPSHAIPMGSQTTSFLSNNNDEGEKSNSCYRNSS DVIASVTGKSRSKRAAAVEGSPAGEGGVRRCSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLS QHSNSHRKVMELRRQKELIRHQQQPQQQQQQCYLHKQDFKVC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 91 | 257 | 167 | 2.1E-61 | – | |
| PANTHER | 91 | 257 | 167 | 2.1E-61 | – | |
| SMART | 185 | 235 | 51 | 9.8E-17 | ||
| Gene3D | 187 | 236 | 50 | 4.4E-12 | ||
| SUPERFAMILY | 189 | 249 | 61 | 5.7E-14 | – | |
| ProSiteProfiles | 189 | 221 | 33 | 11.2 | ||
| CDD | 190 | 237 | 48 | 5.90708E-14 | ||
| ProSitePatterns | 191 | 216 | 26 | - | ||
| Pfam | 191 | 224 | 34 | 1.1E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0050600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…