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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0051600 |
| Transcript ID | LotjaGi3g1v0051600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor; TAIR: AT3G56400.1 WRKY DNA-binding protein 70; Swiss-Prot: sp|Q9LY00|WRK70_ARATH Probable WRKY transcription factor 70; TrEMBL-Plants: tr|V7APM3|V7APM3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0051600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5412636..5415288) extracted from Lotus japonicus Gifu genome v1.2.
AGGGAATCCAAGGTGCTATATGCTATCTACTAGCTCCTCTCCAATCTCAAGAGGGAAAGAAGAAAAAGTTAGTGAAAGCA ATAAATTAAAAGATCAATGGAGGATCAAAGGAAGGTAATTGAGGAGCTTGTGAGAGGGCGTGAGTTTGCAAACCAGCTTA GAAAAGTCATTAGAGGAGGTGATGAGTGTGCAAGTGCAACCCCATTTGCTCAACATCTTGCAAAGAATGTCCTCACCTCC TTTTCCAACACACTCTTGTTCTTGCATAAATACCCCACTACTAATTATAGATCTCAGGATCTGGTTTCTGATCAGATGCA GCATGTTAGGGACACTTCCTTTTTCGCGAGTCCCGCTAAATCTGAGGACTCTCAAGACAGTTGCAAGAGCTCCATCTCAA AGGACAGAAGAGGGTGCTACAAGAGAAGGTATAATTAATTTATTTTTTTCATCATCAAAAGTTATATTTATCTTATTTTC TAAATTAGTGTTTTTTTTTTGAAATAATTAGTGATATCAAATTGAGATCATGATGGTGTGGTGTGAGTGTGACACCTTTT AGGTGGGGATCATTATTTTCATGGCGGCTAATGATGATTTAGTGACCTATTTAGAACCCTAAAGACCCATCAAATTCAAA AGAAAAATTGAGTGTAAAACCCTAATGACCCATCAATTCTTAGAATAGACTTGCACAGATCTCTCTACCCTTCCGTTTTC AGTTCATCTTCTTTCACTCATCTCACTTCCTTATCTTCTGTCTCATACATCAAGTTCTAGTCCTAAACTCAATAACATGG CTGCTTTCATATGACCTTTGCTAACTCTGGTGAACAACCTTTCTTTGGTAAACTTTAGATCTATCTCCAATGGATATTTC CTTCTTTGCCATTCTCAATCATTGTTCTATTCTCGATTCATATATCCATATCGATCCATTTCCTTTATTGTTCTATCCTA TTTATTCAATATCCATGATTATATCCTCTTTGTTCAATGATTCAAAAACTCTTAATAAATGACAACCAAGTGAAGACTAA ACATCTCATAAGTTTTGTTGAATTTTATTTGTTGCAATATATAATTGACCCTCTGAAACCCTAATAGCCAATTTTATTGC TCAATATACGTTGGTATATATATTTAATGCATTTGTCAAATGGACCCATCAATTATTATTTGGCATCATCATATATAAAT TAATATATATCATGATGGATTTAAGCCTTTTGTTTTCCTTCTTTTTCGTGGTTGTAGACTTTGTTCAAAAAATAGTTTTG GTTGAGTTTTAGACTTTCAGTCTCTATTAAAGATGATGTATGCATGAAGATGATAATCTTTTGTAGCTAGTATGATGATG GTGCTTTTGCTTTTATAATTCAGATGTTCCTTGATGTAATTCTTTTGTATACATCTTGTACTCAACATATATATTGATAA TATTATTCCGTTGCCTTTTAAAAAATTGTAATTGACAACTTTGCAAATATGATATTCTTTTACATAGAAAAATTGCCCAA ACATGGGAGAAGGTGTCACAAACTCCAACAAGTGATGGATATCAATGGAGAAAGTATGGCCAAAAAGAGATCCTAAATTC CAAATACTCAAGGTATGTCATAAATGATTAATTCCCTATAATTCATTTATCCCTTCTTTTCCTAATTATACCACTATGTT TATGTCCCTTTCCCTTCTAATTATAAGCTTCTAAGTCCTTATCTCACTTGATATGTCCTTATCCATTATTCAATATGCAG GAACTACTACAGGTGCACTCACAAGTTTGATCAGAAATGCCAAGCAACCAAACAAGTTCAGAGAATTCAAGAGGAGCCTC CCTTATATAGGACAACTTACTATGGCCACCATAATTGCAAAAACATGCTAATACACCCTGAAATCATACTTGATCCCAGT TCTCCTTCTGAAACTTCAATTTTTCTTAGCTTTAACAACACCTTCCCAACTCCAGCTAAACAAGATTGCCCTTTTTTATC CTCATCTTTTCTCTCACCATCGGTCCGCAATGAGTGTAAGGAGGAAGTTCCATCACTTTCCTTAGAAGATTACATACTAT CATCCCCTGAGCCTACTATAGATAATTCTTCAAGGCATCTCGCAACAGCATCGTCGATCCTTGAATCTTCCAATCACAGG GATGTGATGTCTAGTGTGATCTTTATTGATTCTGTTGAGCTTCATATGGATGATTTCTTTCTGCCTTTTGTTTGATTTTG ATGATAAGTTGGGTATGTTTCAATTTAGCATGGATTTTTTTTATGGTTAAACATTGCTATATATATGTATAGGGTGAAAA CTTCATAATTAGATAAATGTTGCTTAATTTTTTCTTTGAAGTTGTATGAGCTTGAGCTCCATTATTGTAGATCGCCACTT TTCTCATTCATTTTCTATATATGTATAAGAAATTAAAGGAGTTGAAAATTTGTTCTGTACTATATACTTCCTTCAGATTA TAATGAAAATGTGTCCCTTCAACAAATGGAAATTAATATAATTAGAGCGACCTAATGTAATTAAAGCAATTACATGAAAA TTAATATAATTAGAGCGACCTGATGTAATTTGATGTGATTGTCACGGTTTGTGTTCAATGTAAATGCATTTAGATTATTT TGAGGGAGTACTG
CDS sequence (LotjaGi3g1v0051600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGATCAAAGGAAGGTAATTGAGGAGCTTGTGAGAGGGCGTGAGTTTGCAAACCAGCTTAGAAAAGTCATTAGAGG AGGTGATGAGTGTGCAAGTGCAACCCCATTTGCTCAACATCTTGCAAAGAATGTCCTCACCTCCTTTTCCAACACACTCT TGTTCTTGCATAAATACCCCACTACTAATTATAGATCTCAGGATCTGGTTTCTGATCAGATGCAGCATGTTAGGGACACT TCCTTTTTCGCGAGTCCCGCTAAATCTGAGGACTCTCAAGACAGTTGCAAGAGCTCCATCTCAAAGGACAGAAGAGGGTG CTACAAGAGAAGAAAAATTGCCCAAACATGGGAGAAGGTGTCACAAACTCCAACAAGTGATGGATATCAATGGAGAAAGT ATGGCCAAAAAGAGATCCTAAATTCCAAATACTCAAGGAACTACTACAGGTGCACTCACAAGTTTGATCAGAAATGCCAA GCAACCAAACAAGTTCAGAGAATTCAAGAGGAGCCTCCCTTATATAGGACAACTTACTATGGCCACCATAATTGCAAAAA CATGCTAATACACCCTGAAATCATACTTGATCCCAGTTCTCCTTCTGAAACTTCAATTTTTCTTAGCTTTAACAACACCT TCCCAACTCCAGCTAAACAAGATTGCCCTTTTTTATCCTCATCTTTTCTCTCACCATCGGTCCGCAATGAGTGTAAGGAG GAAGTTCCATCACTTTCCTTAGAAGATTACATACTATCATCCCCTGAGCCTACTATAGATAATTCTTCAAGGCATCTCGC AACAGCATCGTCGATCCTTGAATCTTCCAATCACAGGGATGTGATGTCTAGTGTGATCTTTATTGATTCTGTTGAGCTTC ATATGGATGATTTCTTTCTGCCTTTTGTTTGA
Protein sequence (LotjaGi3g1v0051600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDQRKVIEELVRGREFANQLRKVIRGGDECASATPFAQHLAKNVLTSFSNTLLFLHKYPTTNYRSQDLVSDQMQHVRDT SFFASPAKSEDSQDSCKSSISKDRRGCYKRRKIAQTWEKVSQTPTSDGYQWRKYGQKEILNSKYSRNYYRCTHKFDQKCQ ATKQVQRIQEEPPLYRTTYYGHHNCKNMLIHPEIILDPSSPSETSIFLSFNNTFPTPAKQDCPFLSSSFLSPSVRNECKE EVPSLSLEDYILSSPEPTIDNSSRHLATASSILESSNHRDVMSSVIFIDSVELHMDDFFLPFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 237 | 234 | 3.2E-77 | – | |
| PANTHER | 4 | 237 | 234 | 3.2E-77 | – | |
| Gene3D | 104 | 188 | 85 | 7.4E-24 | ||
| ProSiteProfiles | 120 | 184 | 65 | 19.29 | ||
| SUPERFAMILY | 120 | 186 | 67 | 8.63E-24 | ||
| SMART | 125 | 187 | 63 | 1.0E-35 | ||
| Pfam | 127 | 186 | 60 | 4.2E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0051600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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