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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0053000 |
| Transcript ID | LotjaGi3g1v0053000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin-L1-1; TAIR: AT2G26430.1 arginine-rich cyclin 1; Swiss-Prot: sp|Q8RWV3|CCL11_ARATH Cyclin-L1-1; TrEMBL-Plants: tr|A0A151U588|A0A151U588_CAJCA Cyclin-L1-1; Found in the gene: LotjaGi3g1v0053000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5540904..5544926) extracted from Lotus japonicus Gifu genome v1.2.
GTTATTGTCTTCTACCCTCTAATTTCTCCCAATTTCACCTTCTAATCCCCCAAATTCAGAATTGGAACCCTAATTCCACC CAATCTCACTCAATCTCTCACCTTCTCTACTCCCATAGCTGCTGTCCACACCACCGACGATAACATTTTCAATCTAAAAT AGGTACCGCGCTTCTGCTCCGATCAAGCTCTCAGGTACCGTTGTCTCCGCAATTAATAACATTTTCAATCTAGGTTTTTT TGATTGGTTCTGTGTTTTAGTGCTCTTGGAAGTGTTCACAAATTACAACCCTGTTGAATGCACATAAGGTTCCAGTTTAA TTTGTATGGTTTCATTGATTATTAACAAGTCTTGCTCCTTTTGATGCTACTGCTGTTTTCTACCCATTGATGTTTTTGGA ATCAGAGTTTCCATGTATGGGTTCTTTTGGATCCATCATCACTTGTTGTTGTTGGGTGTCATTTACTTGATGGATTTTTT GTTGTTATTATCATTGTGAATAGGCCATCTCTTTTGGCAAAGAGGAATGCTATTAGGTACCATACGAATAAATAGGCCAA CGAAATGTAAGAATGGACTAAATGACACTGTAATATCAGATGTTTTCCCCGGAAATCAAGTGAATCAAAATGTTTAATAC CTAGTCGTAACTTTCGTCTCGTACTTATTAGGATTTCTCTTTGGCAAAAACAACAGGAATGTCTTCTCTCCATTCGAGCT TCTTTTCTCTAGTCTTTTGGTTTTGTTAATCTCTTGACTCAGCTCCTTTCACTTTTAATTTCAGTTATTTTTCACCAACA AAGATCAGCTTCCTCTTTTTTGCTTTCTTTGTTTTATTTTTTTGAAATTTCACGAGTCCTTTTCACGTTTTTGTCAGGGT TAAAGGATAAAAAGGATGATCTACACAGCAATTGACACATTCTACCTCACGGACGAGCAGCTTACGAATTCACCCTCTAG AAAAGATGGCATAGATGAAACCACTGAGACCACCCTTAGAATTTATGGCTGTGATCTCATTCAAGAAAGTGGCATTTTGC TTCGACTGTATCCTTTTCTTTCTTCTTGATATTGTTTTCATTTACATTTTAACTCTCGTGCTCAGTTCAGTTTGTTACCT TAATTGTGTGGCAGACCACAAGCTGTCATGGCCACTGGGCAGGTTCTATTTCATCGTTTCTATTGTAAGAAGTCATTTGC GCGGTTCAATGTCAAGGTTATCTTGTGCTATATATTATTTGCTCGTCTTCCTCTCTCTGTGCTTTAATGAATAAACATGC TCACGGCATATCTTTTTGCAGAAAGTTGCTGCGAGCTGTGTGTGGCTGGCTTCAAAACTGGAGGAAAATCCTAAAAAAGC CAGACAAGTAATCATTGTTTTTCATAGGATGGAATGTAGGAGAGAGAACTTGCCCATGGAATATTTAGACTTGTATTCCA AGGTCAGAAGCTTCTTATTCTCCCCTTCTCACCCTTTTAGTACAGACATGTGGTGAATTTGTTATTTCAATAAATTTGTT ATCTTTGTTGTGAACAGAAATATGTTGATTTGAAAATGGAGTTGAGCAGAACAGAGAGACATATTTTGAAAGAAATGGGA TTCATTTGCCATGTTGAGCATCCTCATAAGTTTATTTCAAATTACCTTGCTACCCTTGAAACACCTCCAGAATTGACGCA AGAAGCTTGGAATCTAGCTAATGATAGGTACATTAATTATACATATTATCATTATAATTATTGTTGTTGTTTTTATTACT TTTTAATATTATTATTTTAATTTTTTATTATTCCAGTATATTCATTTGTTCCCCTCCACAATGTACGCCACGATTTATAA TTTATTACTCCCACAAGATCCCTGAATTAGATTGTCTTTTCTATGCTGTTAAATTTTGGAATGTCTGCTATGCAAGTATA ACTTCAGTTTGAATATTTTGTCAAGATGATTGTACTTTGGTGCAACATACAATGTCAACACTTGATGCTTTTTGTAATCT TGTGTGACAGACATTTGATCCAAGCACAATTTGTAGAGGAGTAAAATTTTGTTTACTCATTTTGTTGCCTGACTGACTAC ATTGTGCTAGGATTTTTTGTTATGGCTCAAATTCAACATGTTTTCATAGAGCCTTATATCTTGCTGTTCTATAGTTATAT GCTTCCCTAACTCTGTTTTTGATCCAGTTTGCGCACTACATTGTGTGTTCGATTTAAGAGTGAGGTTGTGGCTTGTGGAG TTATATATGCTGCTGCACGTAGATTCCAAGTTCCCCTTCCTGAGAACTCACCTTGGTGGAAGGCATTTGACGCAGACAAG TCTGGAATTGATGAAGTCTGCAGGGTTCTGGCACACCTTTATAGCCTTCCCAAGGCAGAATATATGTCAGTCTGCAAGGA CGGGGACTTCACATTCTCCAACAAACCATTGGAATCAAAGTCTCAGCCAACAGCAAAGGTGACGACGTTTTCTATATTAA TTTTGAGATTTTGTTCCTTTGAAGTGAGGGATATATGCTTTAGAAAGTAAGGTGAAAAGCTAAACCATTATTTTTTCTAT TAATGGTTAAACTACATACTTCATTCTAAATCCTTAATTTTTAACTTTCTTTAATGATGCAATATTAGCATTAGTCGACT ATTATGGGACAAATGTTTGCTTTTGTAAACCTTTATTATTTTCAATCAACTTCTGGTTTTAATCTGACATATTTTAAATC ACTGCCAATTGTAGGATGTGCCTCAAAGCAGTTCCCCAGCTAATACTGACACCTCAGAGCCAAAGGGAGCCTCTGGAGAA GCTAATGTTGAATCAATTGGTGGCAAGGATGGATTGGCAAAGCTAGCTATTGATAAGCTAAAAGATTCTAAGAAGTCTGA TGATGAATCCAAAGGCACTGAGGGAGAGACAAGAAATGAACCCACGCTGAAGTCCAAGTTTGACCGTAAATTGGAGACCA GTGGTGACATACGCAGAGAGAGGGAAAGGGATAGGGATAGTAGGGATAGAGACAGGGATAGGGACAGGGAGAGGGACAGA AGAAGATCCAGGGATCGCGATCGGGGAAGGGATTCTGATAAAGAGCGTGAACGAGAGGAAGGCGAGAGGGACAAACTCAA GGATCATGGTCACCGTTCTAGGGAGAGAGCAAAGGATTCAGGTACTTCTAAAATCGCTAGCATTTTTCATTATTTTTTGT TGTGTATTTTGTTTATAGTTAAGTCTTTTTATTGGATGCAGGGCATTCAGAGAAGTCTAAACGCCATTCATCACGCGGTA TGAATTCTTTTGTCTTCATGAGTTTGGCATTTGTTTTCATTTTGGCATGTCATCATCTTCTAACATGTTTTCATTTCAGA TCATGACTACTACAGTTCCTCTTACTCGTCAAGAGAGAAAGATAGGCATAGACACCATTGAGAAGAGCTTTCAGGATGTG CCGGCATTATTATTGTCTATGACTCCTTGCAAAGTCAGTCAATTGATCAAGCACTACACACAGTCTTTGATTTATAATCA GTAACTACTAACTGTCAGGGAAGAGTTGTTACATATGTATACAATTAGTATTGTCTTTTTTGTTTGTTGTAGCAACCATG ATGTCCAAGCTTGTCTTTCAGATTTCAATGAAGACAATTTTCCTTGACTCCATCTCTTTTGCTAAGATAATATACAAAGG TTAAAGACAACTTCAGCATGTTAGCTAGTTTGATTTGTGATATGTTCTTTATTAATATTTGGATTTAGGAACAATTTATA AGTGCTTTAGTCTGAGCAAATTTTGTTCTGTTCCATAAAACTCCATTTTGTTAGCTAAATGTAAAGAGCATTGAGAAAGG TGAAAGATTGGCTGAAAGAATCAAAAAAATGGAAGTGTATTATTGACCATGAACAAGAAATGGATTATGAGAATAGAAAA ATACTTGTTTAATTATCTTCTCAATTTTCTGAATTATTTTTTTTAGAAATAATTTTGAAGATTTGTATTTCGAAAGTAGA AAAAATATTTTATTTAAACGAGA
CDS sequence (LotjaGi3g1v0053000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCTACACAGCAATTGACACATTCTACCTCACGGACGAGCAGCTTACGAATTCACCCTCTAGAAAAGATGGCATAGA TGAAACCACTGAGACCACCCTTAGAATTTATGGCTGTGATCTCATTCAAGAAAGTGGCATTTTGCTTCGACTACCACAAG CTGTCATGGCCACTGGGCAGGTTCTATTTCATCGTTTCTATTGTAAGAAGTCATTTGCGCGGTTCAATGTCAAGAAAGTT GCTGCGAGCTGTGTGTGGCTGGCTTCAAAACTGGAGGAAAATCCTAAAAAAGCCAGACAAGTAATCATTGTTTTTCATAG GATGGAATGTAGGAGAGAGAACTTGCCCATGGAATATTTAGACTTGTATTCCAAGAAATATGTTGATTTGAAAATGGAGT TGAGCAGAACAGAGAGACATATTTTGAAAGAAATGGGATTCATTTGCCATGTTGAGCATCCTCATAAGTTTATTTCAAAT TACCTTGCTACCCTTGAAACACCTCCAGAATTGACGCAAGAAGCTTGGAATCTAGCTAATGATAGTTTGCGCACTACATT GTGTGTTCGATTTAAGAGTGAGGTTGTGGCTTGTGGAGTTATATATGCTGCTGCACGTAGATTCCAAGTTCCCCTTCCTG AGAACTCACCTTGGTGGAAGGCATTTGACGCAGACAAGTCTGGAATTGATGAAGTCTGCAGGGTTCTGGCACACCTTTAT AGCCTTCCCAAGGCAGAATATATGTCAGTCTGCAAGGACGGGGACTTCACATTCTCCAACAAACCATTGGAATCAAAGTC TCAGCCAACAGCAAAGGATGTGCCTCAAAGCAGTTCCCCAGCTAATACTGACACCTCAGAGCCAAAGGGAGCCTCTGGAG AAGCTAATGTTGAATCAATTGGTGGCAAGGATGGATTGGCAAAGCTAGCTATTGATAAGCTAAAAGATTCTAAGAAGTCT GATGATGAATCCAAAGGCACTGAGGGAGAGACAAGAAATGAACCCACGCTGAAGTCCAAGTTTGACCGTAAATTGGAGAC CAGTGGTGACATACGCAGAGAGAGGGAAAGGGATAGGGATAGTAGGGATAGAGACAGGGATAGGGACAGGGAGAGGGACA GAAGAAGATCCAGGGATCGCGATCGGGGAAGGGATTCTGATAAAGAGCGTGAACGAGAGGAAGGCGAGAGGGACAAACTC AAGGATCATGGTCACCGTTCTAGGGAGAGAGCAAAGGATTCAGGGCATTCAGAGAAGTCTAAACGCCATTCATCACGCGA TCATGACTACTACAGTTCCTCTTACTCGTCAAGAGAGAAAGATAGGCATAGACACCATTGA
Protein sequence (LotjaGi3g1v0053000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIYTAIDTFYLTDEQLTNSPSRKDGIDETTETTLRIYGCDLIQESGILLRLPQAVMATGQVLFHRFYCKKSFARFNVKKV AASCVWLASKLEENPKKARQVIIVFHRMECRRENLPMEYLDLYSKKYVDLKMELSRTERHILKEMGFICHVEHPHKFISN YLATLETPPELTQEAWNLANDSLRTTLCVRFKSEVVACGVIYAAARRFQVPLPENSPWWKAFDADKSGIDEVCRVLAHLY SLPKAEYMSVCKDGDFTFSNKPLESKSQPTAKDVPQSSSPANTDTSEPKGASGEANVESIGGKDGLAKLAIDKLKDSKKS DDESKGTEGETRNEPTLKSKFDRKLETSGDIRRERERDRDSRDRDRDRDRERDRRRSRDRDRGRDSDKEREREEGERDKL KDHGHRSRERAKDSGHSEKSKRHSSRDHDYYSSSYSSREKDRHRHH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 446 | 446 | 5.1E-140 | – | |
| SUPERFAMILY | 4 | 147 | 144 | 2.25E-38 | ||
| Gene3D | 4 | 148 | 145 | 1.8E-45 | – | |
| PANTHER | 8 | 382 | 375 | 1.7E-136 | ||
| PANTHER | 8 | 382 | 375 | 1.7E-136 | – | |
| Pfam | 11 | 147 | 137 | 4.6E-13 | ||
| CDD | 34 | 109 | 76 | 1.30538E-13 | ||
| SMART | 40 | 143 | 104 | 2.1E-8 | ||
| Gene3D | 151 | 253 | 103 | 1.6E-27 | – | |
| SUPERFAMILY | 152 | 252 | 101 | 2.87E-29 | ||
| CDD | 153 | 240 | 88 | 3.81378E-7 | ||
| SMART | 156 | 238 | 83 | 3.0E-5 | ||
| MobiDBLite | 262 | 446 | 185 | - | – | |
| MobiDBLite | 262 | 292 | 31 | - | – | |
| MobiDBLite | 308 | 439 | 132 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Cyclin-dependent protein serine/threonine kinase regulator activity | Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0053000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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