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LotjaGi3g1v0053000.1

Overview

Field Value
Gene ID LotjaGi3g1v0053000
Transcript ID LotjaGi3g1v0053000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Cyclin-L1-1; TAIR: AT2G26430.1 arginine-rich cyclin 1; Swiss-Prot: sp|Q8RWV3|CCL11_ARATH Cyclin-L1-1; TrEMBL-Plants: tr|A0A151U588|A0A151U588_CAJCA Cyclin-L1-1; Found in the gene: LotjaGi3g1v0053000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:5540904..5544926) extracted from Lotus japonicus Gifu genome v1.2.

GTTATTGTCTTCTACCCTCTAATTTCTCCCAATTTCACCTTCTAATCCCCCAAATTCAGAATTGGAACCCTAATTCCACC CAATCTCACTCAATCTCTCACCTTCTCTACTCCCATAGCTGCTGTCCACACCACCGACGATAACATTTTCAATCTAAAAT AGGTACCGCGCTTCTGCTCCGATCAAGCTCTCAGGTACCGTTGTCTCCGCAATTAATAACATTTTCAATCTAGGTTTTTT TGATTGGTTCTGTGTTTTAGTGCTCTTGGAAGTGTTCACAAATTACAACCCTGTTGAATGCACATAAGGTTCCAGTTTAA TTTGTATGGTTTCATTGATTATTAACAAGTCTTGCTCCTTTTGATGCTACTGCTGTTTTCTACCCATTGATGTTTTTGGA ATCAGAGTTTCCATGTATGGGTTCTTTTGGATCCATCATCACTTGTTGTTGTTGGGTGTCATTTACTTGATGGATTTTTT GTTGTTATTATCATTGTGAATAGGCCATCTCTTTTGGCAAAGAGGAATGCTATTAGGTACCATACGAATAAATAGGCCAA CGAAATGTAAGAATGGACTAAATGACACTGTAATATCAGATGTTTTCCCCGGAAATCAAGTGAATCAAAATGTTTAATAC CTAGTCGTAACTTTCGTCTCGTACTTATTAGGATTTCTCTTTGGCAAAAACAACAGGAATGTCTTCTCTCCATTCGAGCT TCTTTTCTCTAGTCTTTTGGTTTTGTTAATCTCTTGACTCAGCTCCTTTCACTTTTAATTTCAGTTATTTTTCACCAACA AAGATCAGCTTCCTCTTTTTTGCTTTCTTTGTTTTATTTTTTTGAAATTTCACGAGTCCTTTTCACGTTTTTGTCAGGGT TAAAGGATAAAAAGGATGATCTACACAGCAATTGACACATTCTACCTCACGGACGAGCAGCTTACGAATTCACCCTCTAG AAAAGATGGCATAGATGAAACCACTGAGACCACCCTTAGAATTTATGGCTGTGATCTCATTCAAGAAAGTGGCATTTTGC TTCGACTGTATCCTTTTCTTTCTTCTTGATATTGTTTTCATTTACATTTTAACTCTCGTGCTCAGTTCAGTTTGTTACCT TAATTGTGTGGCAGACCACAAGCTGTCATGGCCACTGGGCAGGTTCTATTTCATCGTTTCTATTGTAAGAAGTCATTTGC GCGGTTCAATGTCAAGGTTATCTTGTGCTATATATTATTTGCTCGTCTTCCTCTCTCTGTGCTTTAATGAATAAACATGC TCACGGCATATCTTTTTGCAGAAAGTTGCTGCGAGCTGTGTGTGGCTGGCTTCAAAACTGGAGGAAAATCCTAAAAAAGC CAGACAAGTAATCATTGTTTTTCATAGGATGGAATGTAGGAGAGAGAACTTGCCCATGGAATATTTAGACTTGTATTCCA AGGTCAGAAGCTTCTTATTCTCCCCTTCTCACCCTTTTAGTACAGACATGTGGTGAATTTGTTATTTCAATAAATTTGTT ATCTTTGTTGTGAACAGAAATATGTTGATTTGAAAATGGAGTTGAGCAGAACAGAGAGACATATTTTGAAAGAAATGGGA TTCATTTGCCATGTTGAGCATCCTCATAAGTTTATTTCAAATTACCTTGCTACCCTTGAAACACCTCCAGAATTGACGCA AGAAGCTTGGAATCTAGCTAATGATAGGTACATTAATTATACATATTATCATTATAATTATTGTTGTTGTTTTTATTACT TTTTAATATTATTATTTTAATTTTTTATTATTCCAGTATATTCATTTGTTCCCCTCCACAATGTACGCCACGATTTATAA TTTATTACTCCCACAAGATCCCTGAATTAGATTGTCTTTTCTATGCTGTTAAATTTTGGAATGTCTGCTATGCAAGTATA ACTTCAGTTTGAATATTTTGTCAAGATGATTGTACTTTGGTGCAACATACAATGTCAACACTTGATGCTTTTTGTAATCT TGTGTGACAGACATTTGATCCAAGCACAATTTGTAGAGGAGTAAAATTTTGTTTACTCATTTTGTTGCCTGACTGACTAC ATTGTGCTAGGATTTTTTGTTATGGCTCAAATTCAACATGTTTTCATAGAGCCTTATATCTTGCTGTTCTATAGTTATAT GCTTCCCTAACTCTGTTTTTGATCCAGTTTGCGCACTACATTGTGTGTTCGATTTAAGAGTGAGGTTGTGGCTTGTGGAG TTATATATGCTGCTGCACGTAGATTCCAAGTTCCCCTTCCTGAGAACTCACCTTGGTGGAAGGCATTTGACGCAGACAAG TCTGGAATTGATGAAGTCTGCAGGGTTCTGGCACACCTTTATAGCCTTCCCAAGGCAGAATATATGTCAGTCTGCAAGGA CGGGGACTTCACATTCTCCAACAAACCATTGGAATCAAAGTCTCAGCCAACAGCAAAGGTGACGACGTTTTCTATATTAA TTTTGAGATTTTGTTCCTTTGAAGTGAGGGATATATGCTTTAGAAAGTAAGGTGAAAAGCTAAACCATTATTTTTTCTAT TAATGGTTAAACTACATACTTCATTCTAAATCCTTAATTTTTAACTTTCTTTAATGATGCAATATTAGCATTAGTCGACT ATTATGGGACAAATGTTTGCTTTTGTAAACCTTTATTATTTTCAATCAACTTCTGGTTTTAATCTGACATATTTTAAATC ACTGCCAATTGTAGGATGTGCCTCAAAGCAGTTCCCCAGCTAATACTGACACCTCAGAGCCAAAGGGAGCCTCTGGAGAA GCTAATGTTGAATCAATTGGTGGCAAGGATGGATTGGCAAAGCTAGCTATTGATAAGCTAAAAGATTCTAAGAAGTCTGA TGATGAATCCAAAGGCACTGAGGGAGAGACAAGAAATGAACCCACGCTGAAGTCCAAGTTTGACCGTAAATTGGAGACCA GTGGTGACATACGCAGAGAGAGGGAAAGGGATAGGGATAGTAGGGATAGAGACAGGGATAGGGACAGGGAGAGGGACAGA AGAAGATCCAGGGATCGCGATCGGGGAAGGGATTCTGATAAAGAGCGTGAACGAGAGGAAGGCGAGAGGGACAAACTCAA GGATCATGGTCACCGTTCTAGGGAGAGAGCAAAGGATTCAGGTACTTCTAAAATCGCTAGCATTTTTCATTATTTTTTGT TGTGTATTTTGTTTATAGTTAAGTCTTTTTATTGGATGCAGGGCATTCAGAGAAGTCTAAACGCCATTCATCACGCGGTA TGAATTCTTTTGTCTTCATGAGTTTGGCATTTGTTTTCATTTTGGCATGTCATCATCTTCTAACATGTTTTCATTTCAGA TCATGACTACTACAGTTCCTCTTACTCGTCAAGAGAGAAAGATAGGCATAGACACCATTGAGAAGAGCTTTCAGGATGTG CCGGCATTATTATTGTCTATGACTCCTTGCAAAGTCAGTCAATTGATCAAGCACTACACACAGTCTTTGATTTATAATCA GTAACTACTAACTGTCAGGGAAGAGTTGTTACATATGTATACAATTAGTATTGTCTTTTTTGTTTGTTGTAGCAACCATG ATGTCCAAGCTTGTCTTTCAGATTTCAATGAAGACAATTTTCCTTGACTCCATCTCTTTTGCTAAGATAATATACAAAGG TTAAAGACAACTTCAGCATGTTAGCTAGTTTGATTTGTGATATGTTCTTTATTAATATTTGGATTTAGGAACAATTTATA AGTGCTTTAGTCTGAGCAAATTTTGTTCTGTTCCATAAAACTCCATTTTGTTAGCTAAATGTAAAGAGCATTGAGAAAGG TGAAAGATTGGCTGAAAGAATCAAAAAAATGGAAGTGTATTATTGACCATGAACAAGAAATGGATTATGAGAATAGAAAA ATACTTGTTTAATTATCTTCTCAATTTTCTGAATTATTTTTTTTAGAAATAATTTTGAAGATTTGTATTTCGAAAGTAGA AAAAATATTTTATTTAAACGAGA 

CDS sequence (LotjaGi3g1v0053000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATCTACACAGCAATTGACACATTCTACCTCACGGACGAGCAGCTTACGAATTCACCCTCTAGAAAAGATGGCATAGA TGAAACCACTGAGACCACCCTTAGAATTTATGGCTGTGATCTCATTCAAGAAAGTGGCATTTTGCTTCGACTACCACAAG CTGTCATGGCCACTGGGCAGGTTCTATTTCATCGTTTCTATTGTAAGAAGTCATTTGCGCGGTTCAATGTCAAGAAAGTT GCTGCGAGCTGTGTGTGGCTGGCTTCAAAACTGGAGGAAAATCCTAAAAAAGCCAGACAAGTAATCATTGTTTTTCATAG GATGGAATGTAGGAGAGAGAACTTGCCCATGGAATATTTAGACTTGTATTCCAAGAAATATGTTGATTTGAAAATGGAGT TGAGCAGAACAGAGAGACATATTTTGAAAGAAATGGGATTCATTTGCCATGTTGAGCATCCTCATAAGTTTATTTCAAAT TACCTTGCTACCCTTGAAACACCTCCAGAATTGACGCAAGAAGCTTGGAATCTAGCTAATGATAGTTTGCGCACTACATT GTGTGTTCGATTTAAGAGTGAGGTTGTGGCTTGTGGAGTTATATATGCTGCTGCACGTAGATTCCAAGTTCCCCTTCCTG AGAACTCACCTTGGTGGAAGGCATTTGACGCAGACAAGTCTGGAATTGATGAAGTCTGCAGGGTTCTGGCACACCTTTAT AGCCTTCCCAAGGCAGAATATATGTCAGTCTGCAAGGACGGGGACTTCACATTCTCCAACAAACCATTGGAATCAAAGTC TCAGCCAACAGCAAAGGATGTGCCTCAAAGCAGTTCCCCAGCTAATACTGACACCTCAGAGCCAAAGGGAGCCTCTGGAG AAGCTAATGTTGAATCAATTGGTGGCAAGGATGGATTGGCAAAGCTAGCTATTGATAAGCTAAAAGATTCTAAGAAGTCT GATGATGAATCCAAAGGCACTGAGGGAGAGACAAGAAATGAACCCACGCTGAAGTCCAAGTTTGACCGTAAATTGGAGAC CAGTGGTGACATACGCAGAGAGAGGGAAAGGGATAGGGATAGTAGGGATAGAGACAGGGATAGGGACAGGGAGAGGGACA GAAGAAGATCCAGGGATCGCGATCGGGGAAGGGATTCTGATAAAGAGCGTGAACGAGAGGAAGGCGAGAGGGACAAACTC AAGGATCATGGTCACCGTTCTAGGGAGAGAGCAAAGGATTCAGGGCATTCAGAGAAGTCTAAACGCCATTCATCACGCGA TCATGACTACTACAGTTCCTCTTACTCGTCAAGAGAGAAAGATAGGCATAGACACCATTGA 

Protein sequence (LotjaGi3g1v0053000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIYTAIDTFYLTDEQLTNSPSRKDGIDETTETTLRIYGCDLIQESGILLRLPQAVMATGQVLFHRFYCKKSFARFNVKKV AASCVWLASKLEENPKKARQVIIVFHRMECRRENLPMEYLDLYSKKYVDLKMELSRTERHILKEMGFICHVEHPHKFISN YLATLETPPELTQEAWNLANDSLRTTLCVRFKSEVVACGVIYAAARRFQVPLPENSPWWKAFDADKSGIDEVCRVLAHLY SLPKAEYMSVCKDGDFTFSNKPLESKSQPTAKDVPQSSSPANTDTSEPKGASGEANVESIGGKDGLAKLAIDKLKDSKKS DDESKGTEGETRNEPTLKSKFDRKLETSGDIRRERERDRDSRDRDRDRDRERDRRRSRDRDRGRDSDKEREREEGERDKL KDHGHRSRERAKDSGHSEKSKRHSSRDHDYYSSSYSSREKDRHRHH 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF 1 446 446 5.1E-140
SUPERFAMILY 4 147 144 2.25E-38
Gene3D 4 148 145 1.8E-45
PANTHER 8 382 375 1.7E-136
PANTHER 8 382 375 1.7E-136
Pfam 11 147 137 4.6E-13
CDD 34 109 76 1.30538E-13
SMART 40 143 104 2.1E-8
Gene3D 151 253 103 1.6E-27
SUPERFAMILY 152 252 101 2.87E-29
CDD 153 240 88 3.81378E-7
SMART 156 238 83 3.0E-5
MobiDBLite 262 446 185 -
MobiDBLite 262 292 31 -
MobiDBLite 308 439 132 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Regulation of transcription by RNA polymerase II Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
Molecular function Cyclin-dependent protein serine/threonine kinase regulator activity Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins.
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0053000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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