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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0053000 |
Transcript ID | LotjaGi3g1v0053000.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cyclin-like protein; TAIR: AT2G26430.1 arginine-rich cyclin 1; Swiss-Prot: sp|Q8RWV3|CCL11_ARATH Cyclin-L1-1; TrEMBL-Plants: tr|A0A151U588|A0A151U588_CAJCA Cyclin-L1-1; Found in the gene: LotjaGi3g1v0053000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5541799..5543433) extracted from Lotus japonicus Gifu genome v1.2.
ATGATCTACACAGCAATTGACACATTCTACCTCACGGACGAGCAGCTTACGAATTCACCCTCTAGAAAAGATGGCATAGA TGAAACCACTGAGACCACCCTTAGAATTTATGGCTGTGATCTCATTCAAGAAAGTGGCATTTTGCTTCGACTGTATCCTT TTCTTTCTTCTTGATATTGTTTTCATTTACATTTTAACTCTCGTGCTCAGTTCAGTTTGTTACCTTAATTGTGTGGCAGA CCACAAGCTGTCATGGCCACTGGGCAGGTTCTATTTCATCGTTTCTATTGTAAGAAGTCATTTGCGCGGTTCAATGTCAA GGTTATCTTGTGCTATATATTATTTGCTCGTCTTCCTCTCTCTGTGCTTTAATGAATAAACATGCTCACGGCATATCTTT TTGCAGAAAGTTGCTGCGAGCTGTGTGTGGCTGGCTTCAAAACTGGAGGAAAATCCTAAAAAAGCCAGACAAGTAATCAT TGTTTTTCATAGGATGGAATGTAGGAGAGAGAACTTGCCCATGGAATATTTAGACTTGTATTCCAAGGTCAGAAGCTTCT TATTCTCCCCTTCTCACCCTTTTAGTACAGACATGTGGTGAATTTGTTATTTCAATAAATTTGTTATCTTTGTTGTGAAC AGAAATATGTTGATTTGAAAATGGAGTTGAGCAGAACAGAGAGACATATTTTGAAAGAAATGGGATTCATTTGCCATGTT GAGCATCCTCATAAGTTTATTTCAAATTACCTTGCTACCCTTGAAACACCTCCAGAATTGACGCAAGAAGCTTGGAATCT AGCTAATGATAGGTACATTAATTATACATATTATCATTATAATTATTGTTGTTGTTTTTATTACTTTTTAATATTATTAT TTTAATTTTTTATTATTCCAGTATATTCATTTGTTCCCCTCCACAATGTACGCCACGATTTATAATTTATTACTCCCACA AGATCCCTGAATTAGATTGTCTTTTCTATGCTGTTAAATTTTGGAATGTCTGCTATGCAAGTATAACTTCAGTTTGAATA TTTTGTCAAGATGATTGTACTTTGGTGCAACATACAATGTCAACACTTGATGCTTTTTGTAATCTTGTGTGACAGACATT TGATCCAAGCACAATTTGTAGAGGAGTAAAATTTTGTTTACTCATTTTGTTGCCTGACTGACTACATTGTGCTAGGATTT TTTGTTATGGCTCAAATTCAACATGTTTTCATAGAGCCTTATATCTTGCTGTTCTATAGTTATATGCTTCCCTAACTCTG TTTTTGATCCAGTTTGCGCACTACATTGTGTGTTCGATTTAAGAGTGAGGTTGTGGCTTGTGGAGTTATATATGCTGCTG CACGTAGATTCCAAGTTCCCCTTCCTGAGAACTCACCTTGGTGGAAGGCATTTGACGCAGACAAGTCTGGAATTGATGAA GTCTGCAGGGTTCTGGCACACCTTTATAGCCTTCCCAAGGCAGAATATATGTCAGTCTGCAAGGACGGGGACTTCACATT CTCCAACAAACCATTGGAATCAAAGTCTCAGCCAACAGCAAAGGTGACGACGTTTTCTATATTAATTTTGAGATTTTGTT CCTTTGAAGTGAGGGATATATGCTTTAGAAAGTAA
CDS sequence (LotjaGi3g1v0053000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCTACACAGCAATTGACACATTCTACCTCACGGACGAGCAGCTTACGAATTCACCCTCTAGAAAAGATGGCATAGA TGAAACCACTGAGACCACCCTTAGAATTTATGGCTGTGATCTCATTCAAGAAAGTGGCATTTTGCTTCGACTACCACAAG CTGTCATGGCCACTGGGCAGGTTCTATTTCATCGTTTCTATTGTAAGAAGTCATTTGCGCGGTTCAATGTCAAGAAAGTT GCTGCGAGCTGTGTGTGGCTGGCTTCAAAACTGGAGGAAAATCCTAAAAAAGCCAGACAAGTAATCATTGTTTTTCATAG GATGGAATGTAGGAGAGAGAACTTGCCCATGGAATATTTAGACTTGTATTCCAAGAAATATGTTGATTTGAAAATGGAGT TGAGCAGAACAGAGAGACATATTTTGAAAGAAATGGGATTCATTTGCCATGTTGAGCATCCTCATAAGTTTATTTCAAAT TACCTTGCTACCCTTGAAACACCTCCAGAATTGACGCAAGAAGCTTGGAATCTAGCTAATGATAGTTTGCGCACTACATT GTGTGTTCGATTTAAGAGTGAGGTTGTGGCTTGTGGAGTTATATATGCTGCTGCACGTAGATTCCAAGTTCCCCTTCCTG AGAACTCACCTTGGTGGAAGGCATTTGACGCAGACAAGTCTGGAATTGATGAAGTCTGCAGGGTTCTGGCACACCTTTAT AGCCTTCCCAAGGCAGAATATATGTCAGTCTGCAAGGACGGGGACTTCACATTCTCCAACAAACCATTGGAATCAAAGTC TCAGCCAACAGCAAAGGTGACGACGTTTTCTATATTAATTTTGAGATTTTGTTCCTTTGAAGTGAGGGATATATGCTTTA GAAAGTAA
Protein sequence (LotjaGi3g1v0053000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIYTAIDTFYLTDEQLTNSPSRKDGIDETTETTLRIYGCDLIQESGILLRLPQAVMATGQVLFHRFYCKKSFARFNVKKV AASCVWLASKLEENPKKARQVIIVFHRMECRRENLPMEYLDLYSKKYVDLKMELSRTERHILKEMGFICHVEHPHKFISN YLATLETPPELTQEAWNLANDSLRTTLCVRFKSEVVACGVIYAAARRFQVPLPENSPWWKAFDADKSGIDEVCRVLAHLY SLPKAEYMSVCKDGDFTFSNKPLESKSQPTAKVTTFSILILRFCSFEVRDICFRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PIRSF | 1 | 277 | 277 | 1.2E-126 | – | |
Gene3D | 4 | 148 | 145 | 7.3E-46 | – | |
SUPERFAMILY | 4 | 147 | 144 | 9.48E-39 | ||
PANTHER | 8 | 261 | 254 | 4.9E-131 | ||
PANTHER | 8 | 261 | 254 | 4.9E-131 | – | |
Pfam | 11 | 147 | 137 | 1.8E-13 | ||
CDD | 34 | 109 | 76 | 1.96597E-12 | ||
SMART | 40 | 143 | 104 | 2.1E-8 | ||
Gene3D | 151 | 253 | 103 | 7.3E-28 | – | |
SUPERFAMILY | 152 | 252 | 101 | 1.32E-29 | ||
CDD | 153 | 240 | 88 | 5.10242E-6 | ||
SMART | 156 | 238 | 83 | 3.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
Molecular function | Cyclin-dependent protein serine/threonine kinase regulator activity | Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. | ||
Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0053000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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