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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0055400 |
| Transcript ID | LotjaGi3g1v0055400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Repetitive proline-rich cell wall protein 2; TAIR: AT3G22142.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q40375|PRP2_MEDTR Repetitive proline-rich cell wall protein 2; TrEMBL-Plants: tr|A0A151UGR2|A0A151UGR2_CAJCA Repetitive proline-rich cell wall protein 2; Found in the gene: LotjaGi3g1v0055400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5789232..5791322) extracted from Lotus japonicus Gifu genome v1.2.
GGAATATTTGTTTAAATTGATTAAACTTCAGTAGTTGTGCATGAAAGCTGTAAAACACGTCAAGGAGATACATAAGATGT CGGTAGTTTGAAAAGTATTTGCATAATGCAGATCTTGTCTAGTTTCACACATAATTTCCAACTTGACTACCATATGTGGA CAAAATGAGTTATACCAGTGCTGAAAACCCCACACCTACTATTGACTTTGTATACATGATTTGGGTACCAAATCTTCATA TTGGAACCTGCTCCTTACCTATCAGTCGAGTCACTAAGTTAAGGGCCCCTCCTGAGTAGTATAAAAGGTGATCATGCTGG TGTGTTTTACTCCAACTCAAATGAGTGACATGGCTACCTTACGCTCTCTAGTGCTGCTCCTTGTAGCTCTGGCTCTCACC CCTCAAGGGTTTGCCAACTATGAGAAACCCCCTGAGTATACTCCTCCTATTTACAAGCCCCCAGTTGAGAAACCACCCGT CTACAAACCCCCGGTCGAAAAGCCACCGGTGTACAAGCCCCCAGTGGAGAAACCACCAGTGTACAAACCCCCAGTAGAGA AGCCTCCAGTGTACAAACCTCCTGTTGAGAAACCCCCAGTGTACAAGCCCCCAGTTGAGAAGCCCCCAGTTTACAAACCT CCGGTAGAGAAGCCACCAGTGTACAAACCCCCGGTTGAGAAGCCCCCAGTTTACAAACCTCCGGTGGAGAAGCCACCAGT GTACAAGCCCCCAGTTGAGAAACCCCCAGTTTACAAGCCCCCGGTAGAGAAGCCCCCAGTTTACAAGCCCCCAGTTGAGA AACCACCAGTGTACAAGCCCCCAGTAGAGAAGCCACCGGTGTACAAGCCTCCAGTTGAGAAGCCACCCGTGTACAAGCCC CCAGTTGAGAAGCCACCTGTTTACAAACCTCCGGTGGAGAAGCCACCAGTGTACAAGCCCCCAGTTGAGAAACCCCCAGT TTACAAGCCCCCGGCGGAGAAGCCCCCAGTTTACAAGCCCCCGGTTTACAAGCCACCGGTGTACAAGCCCCCAGTTGAGA AGCCACCAGTGTACAAGCCCCCAGTTGAGAAGCCACCTGTGTACAAGCCCCCAGTTGAGAAGCCACCAGTTTACAAGCCC CCAGTTGAAAAGCCACCAGTTTACAAGCCACCAGTTGAGAAGCCACCAGTGTACAAGCCCCCCGTAGAGAAGCCACCAGT TTACAAGCCTCCAGTTGAGAAGCCACCGGTTTACAAGCCCCCAGTTTACAAGCCACCGGTGTACAAGCCCCCAGTTTACA AGCCACCAGTGTACAAGCCCCCAGTAGAGAAGCCACCGGTTTATAAGCCCCCAGTTGAGAAACCTCCAGTTTACAAGCCT CCAGTTGAGAAGCCACCAGTTTACAAGCCTCCAGTTGAGAAGCCACCAATTTACAAGCCCCCAGTTGAGAAGCCGCCAGT TTACAAACCACCAGTAGAGAAGCCACCAGTATACAAGCCTCCTGTTGAGAATCCTCCATATGGGAAGCCACCATATGGTG GTCACCCAGGGTACCCTCCTGCAGGAAACACTCATTTCTAAAACGCATAGCTTCTATATTCAGTTTCTGCTAAATAAGAG TTGAGTTAGCCTTGATACGGTCAATAATGCAGTTTACATGTGCTGGCAATGATTACTTTTGGCTACTCATTTCAAACCTT TATTTACAATGCTATGGCCAAGAAAAGATTGTATGAATGTAAAATGGAAAAACAGAATTTGGTGCTTTGATTGTACTCCA AATTATGAATGAAAGAATTTTATGATTTTGTACATTGTGGAAGTTCATTATATTTGTGTTTGGATATCAAATCCACTCAA TATTAACAAATTCTCATTACAATATACACCTTTTGTATCAAAGTGAGCAAAATGAGTGCACAAATTAGACATCTGTTTGT ACGAATAGCAACATGCTTATTGTCAATATGTATTTAAACCTAGCATATATCTTGAGACTAAATGCCTCCAAATGATAGTT CAGAGGTAAGAGCTGGAGATATATGAGTTGGGGAAGAAAAGGTCCAGGGATCAATTATTGGAGAGTGCAATTTATCTTTA TGATATTTTGA
CDS sequence (LotjaGi3g1v0055400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGTGTGTTTTACTCCAACTCAAATGAGTGACATGGCTACCTTACGCTCTCTAGTGCTGCTCCTTGTAGCTCTGGC TCTCACCCCTCAAGGGTTTGCCAACTATGAGAAACCCCCTGAGTATACTCCTCCTATTTACAAGCCCCCAGTTGAGAAAC CACCCGTCTACAAACCCCCGGTCGAAAAGCCACCGGTGTACAAGCCCCCAGTGGAGAAACCACCAGTGTACAAACCCCCA GTAGAGAAGCCTCCAGTGTACAAACCTCCTGTTGAGAAACCCCCAGTGTACAAGCCCCCAGTTGAGAAGCCCCCATTTAC AAACCTCCGGTGGAGAAGCCACCAGTGTACAAGCCCCCAGTTGAGAAACCCCCATTTACAAGCCCCCGGCGGAGAAGCCC CCAGTTTACAAGCCCCCGGTTTACAAGCCACCGGTGTACAAGCCCCCAGTTGA
Protein sequence (LotjaGi3g1v0055400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVCFTPTQMSDMATLRSLVLLLVALALTPQGFANYEKPPEYTPPIYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPP VEKPPVYKPPVEKPPVYKPPVEKPPFTNLRWRSHQCTSPQLRNPHLQAPGGEAPSLQAPGLQATGVQAPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 36 | 36 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| PANTHER | 13 | 139 | 127 | 2.0E-26 | – | |
| Phobius | 18 | 29 | 12 | - | – | |
| Phobius | 30 | 34 | 5 | - | – | |
| Phobius | 35 | 150 | 116 | - | – | |
| Pfam | 38 | 40 | 3 | 1100.0 | ||
| MobiDBLite | 42 | 102 | 61 | - | – | |
| MobiDBLite | 42 | 150 | 109 | - | – | |
| Pfam | 44 | 53 | 10 | 0.054 | ||
| Pfam | 54 | 63 | 10 | 0.057 | ||
| Pfam | 64 | 73 | 10 | 0.057 | ||
| Pfam | 74 | 83 | 10 | 0.057 | ||
| Pfam | 84 | 93 | 10 | 0.057 | ||
| Pfam | 94 | 103 | 10 | 0.0064 | ||
| MobiDBLite | 110 | 124 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of cell wall | The action of a molecule that contributes to the structural integrity of a cell wall. |
Expression pattern of LotjaGi3g1v0055400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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