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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0055900 |
| Transcript ID | LotjaGi3g1v0055900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fbd-associated f-box protein; TAIR: AT1G13570.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570; TrEMBL-Plants: tr|A0A0L9V6Y8|A0A0L9V6Y8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0055900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5868199..5873093) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTCTCTAATATTTCTTACCAAAACATAGATAAATTCATTTGAGAAAAGGCTTCCCTCTGGTCGCAATTCTCTACACA GTGAGTGGTAGTGCTTAGATTGCAGCCGATCTTCCGAACCAAGCGCGGGCGTGGCCTCGTTATCCACGCCTTCGGTTAGA TGAATGGAGGATTGATCGATCCGGGTTCTCGTGAGCGTCGACGGATCATGGAGCACCAGGTATCTTTTTCCATATATTCT TGTATGTTGTCATTTTCATTTCGTAAAATTACATACATTTTATGATTTACAAAGCTAGGGGAAGGGGGTAAGAGATTACT TTATTTTCCTGATCAATTCTGAGTATCAAGTATGAATTTGTATTCATTATATGGGTACTCAATTTTACTTCATCCCACTA TTTCTTGATCTCTTTGTGTGTGAGTGTCTAGGAGATTATTAGGGGAAGGGGGTAAGAGATTACTCTATTTTCCTGATCAA TCATATTATTTTGTAATTATTTTTTTAACCCTAAGTTGATTTGGTGATGGATCAATTTATTCAAGATCTCGGATAACTCA TTTCAAATTGGAGTCTATGTTCATTGGCAATTTTTTCCTTATAGCAGGTTGTTCGCGATTGGATTAGATAAAAAAAAGAC ATGTAATCCAATTCCATCGATTTTTAATTTTCTCCTCCAATAAATTTGTCTATAAATTCATCCTTATAGCATGCTTTAAA GTATGTTATGGGGTTTTTTTAGACATCTTTAGGAGGATTTTTGCTGTAATGGCCGAGGTTTTGCTATATATTTAAGTAAA ATTATATATATTTAAAAATTTTCGGTTTGAATTTGATTGATTTGGTCTTAAAAGTCAAATTTAAAATCTGATAAAGTCTT ATAAAAAATTTCAATTTTTTCATTTTTGGTTTGTTCATATTTTTTAGTTCTATTTTTCAATTTTTATTAGATTAGAACAG TTATGAACATTTTCAGCCTATTCAAACTTAATTTTAATGGTTCAATTAAATTTAGCATAAGAGTTTGTTTGATACGTCAT ATTAGGCATGATAGTATAAGCTTATATTATACATTAAGGACTTACTCATTATTTGGTGTTTACATTGTATTGCATAAACT TACACATCAATCTTCTCTTATACATTAAAATGATTGATTATTTAATCCACCATATAGATGAGGGATAAGACATAATGAGA GTGTGATACTACATGAAATATTTAATCCACCACCCTCACCACCTCCCTCCACCATCGCCGTCACCACCACCCTCCATCAC CGCCACCACCACCGCTCTCTCCACCACTGCCATCATCGTCGTTACTGTTATCGCCACTACCACTGCTGCCACCACCCTCC ACTTCTGTCACCACCACTATCACCTCTACCACTGCCACCACAGCCCCTATCACCATCACTATTGTCACTACCACCGCTGC CACACCCACCACCACTGTCTCCGCCACCACCATCATCACCATCACCTTCCAACAACAACAACAACAACACCACCACCACC TCCACCACTCTCGACTGCCATCGTCATCGCCACCACCACCACATACCGCCATGACCCACCATCACCACAACTACCCCAAC CACTTCCTCCATCGCCCCTGCCACCACCACAACCACTACACCACCATCACCTTCCAACACCACCATTGTCGCCGCCGCCA CCACCACCACCACCATCACCAACACCACTACTAGCCTACAACATTGTCACCACCACAATACTATCCACCAACATTGTCTC TACCACCCACCACTGCCATCGATATGCCACCACCACTACCTACCGCCACGACCCACCACCATCACTTCCGCCACAACCAC CTCCTTCCACCTCCGCCATCACTCAGCATCACTACTGTCACCTCTGCAGCCACAATCACGCTCCATCACCGCCATTGCCG CAATTACCTCGGCTGCCACCGACATCTTTACCACCCACTAACACCATCCTCATTTTTATAATGTCTATCATTATTTAATA TTTCACTATACATAGGTAGATTTATATTAATTTAAACGAAATAATAATTAGATATACTATGACAAAACGTTGTATATTAT TAAATATTTATTAGATCTAATACTATCGATCCTAATATTATCATATACATTCTATTAGATCTTATACTATATAACATACT AAAGAGATCTTAAGTAAAGTCACCTGCGGTATGGGCTTTTGCCCTCCAAATTATCAGAAAAAAAAAAGCCACCTGCGGTA GTCTTATCTCGAATTACATTGGCAAGTTTATTTGTGTTTTTAAATGCCATGTTTACGATGAACAATATTGATGTGTAAGA TCCACACAGTACACAATTAATATTAGTTAGGTTAGATTTGATAGGTTAGTCATTCAAGATGTTAATTTAACATGCATGAT TAATAATATAAAGTACACGTTATATGATTGAGGGTTTTCCGTTTCTTTTTGTTGGATTCTTCTCTGGTTTTTTATTACAT GCGAAAAAAAAAACATGTATATGATTGGTTTCTTATACTCCGAATTGCAAAGTATTTTATCTCCATGCGCATTTTTTTAT TCTAAACATTGAGTTAATGCAATTCAAATTCAAATTTCTGGAATAGATTTTGTTCATAATCAGGGACTCCTTTAAAAAGG TTGATTATTTGAATTATTCGATTTGTTTAACGGTTGGAAACAATATCAAATATTCTTTTGAAGCCGTATTTGATGCATGA CCCTAGGAAGAACTAAATTATTCTCTAGAGTGAAGAATATAATTTAGATTAATCTTGTGATGTAAATCTAGATATTTTTC CCTATACATAAAACATAGAATTTTGTTTTCGTTTCCTTAATTATGTTTATTTTAATGAGTTATGTTAGGGAGAAAATGAA GCTGGGGAGGACATTGAAACACAACCACTTGAGATAGAGGAGAAGAAAGACATCATAAGAGACCTGCCTGATGAAATCCT TGGGAACATTTTATCTCGTGTGTCAATCAAAGAAGCTGCTATGACTAGCATCCTGTCAAACAAATGGAGGTATCAATGGA CCAAATATTTTAGGATCTTGAACATTGATAGTTCACTTGACACCTTTGAGTTGAGCAGAAAAAAAATTGTTGTATCTCTG AGAAAATGCAACATTTTTCTCTCTAAGTGGGAGAACTTCGTGAGAACTTTGGAGCATGAGATGAAATCAGTAGAAAGTCC ATGCTTGCAGTTGCATGGATTGAGAATTTGCCTTGAGATGGGTTGCCCTGATAAGCTAGTTGAATGGTTCAAGTTTGCAG CTAAGAAGAATGTTCAAATTCTTGATTTGGATTTTTCATTTAACTACAATAAAGAATTTTTCCTAATCAGTGAGGCCATT CGCAAACTTCAATATTTTTGTGTGTTGCATCGGGAGTTTACAATGAACAATATTGAAATGAAATCATTGTGTGTCCTGCG TTTGGCTTCTGTGGATGTTAGTGGTGAGGTTGTTGAGTATTTGTTAAAACATTGTCCTTCTCTTGAAACATTGTTTATCA AATCCTCAAAACTACTCATTGTGAACTTGCATGTTTATGGCAAAGCTCTAAGACTGAAACATTTGGAGTTGGTTAATTGT AACATTCTAATCGTTAGTATCTCTGCTGAAAATCTCATCACATTCATATACTCTGGGAGTTATGGAACAGATGTAAGATA TAAAAATATTCCAAGGCTAAGGAAAGCTTCCTTTGGAGGGATGTATGGTAGTTACCTGCTTACCCACTTGAACAATGTGG ATCTTTTTGGAATGATATCCCAGTTAGAAGTGCTGAAATTGGAACTACAACTATGGAATACGGTAAGTAGTTAACTACAT CACTTTTTGGATTGATATTTTTTTATATGTCATCTTGTTTTATTCATTATTTTTCATGTCATGATCCAAACTCTAGGGAA TTCTTCTTGATCTGCCTGAGTTCAATAATGTGAGGCATTTAGAGCTGCAAATTCCTCATGTATATGGAGGAGAACTTGAT CGTTCTGTTTCTTTACTAGGTGCATTTCCTTCCATATGTGTGCTTAAGATCAAGGTAAAAACAATCTTTTTTTTACTTCT ATTTCTATTGCACCATCTAATTTCTGGATTATGACTTTTGACACCTTATTTTCTCTCTTATCTTATTTCCACACATTTTT CTTTCTGTCTATTTCTGCATTTTCTGTCACATCACTCATTTTTCTCAATTCTATTCACATTCATTAAGATGGAGACGGAA AACTAGTGTCAACAACTCATTATAAATTTATAATTTCCTTATGTCTTCAACTTTGATCACAATGGTTTTCATCATATTTT ATTTGATTTGGCAGTTCTATAGGTCATATCTTATGGCATGGGAGCCAGAGCTACAATGGAAAGCCAATCTGCAATGTGAG TTCCCAAACCTGAAAGAGCTGGAAGTGTCAGGATATAAAAAAGACCCAAGTCAACTTGAGCTGCTAACCAAGATATTTAA GAGTGCTCCTAATCTAAACAAGATTATTGTGGATTCCCTGCATCCACGCCATGCGTATAAGTCACCTGCTGTGAAGGCCA AGATTAGACAACTTTCTCATGATGCTACTAAATATTTTGTTGATGGTTTGAAACCATATGTGCCTCCACCAGTTGAATTG GTTGTCCTGTAATGGCACCAATGGCCATTTAAATTTTGTCATGACAATGAGTTGCATGATTCTTCTGAGACTTCATGATG TTGCGGAAATTTCTAAAATTTCCTGTGCAATTTTCCCTTTCAGGTTCTTGCTATGATCAAAACATTTTGTGTGATCATGA TTCATACTTTTATGTTTGGAACTTTGTTGCTTTAATTTGCCATTTTGGTGGGACTCATAAGAGACCTTGAGATTTTGTTA AAATCATGAATTTTG
CDS sequence (LotjaGi3g1v0055900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGGAGGATTGATCGATCCGGGTTCTCGTGAGCGTCGACGGATCATGGAGCACCAGGGAGAAAATGAAGCTGGGGA GGACATTGAAACACAACCACTTGAGATAGAGGAGAAGAAAGACATCATAAGAGACCTGCCTGATGAAATCCTTGGGAACA TTTTATCTCGTGTGTCAATCAAAGAAGCTGCTATGACTAGCATCCTGTCAAACAAATGGAGGTATCAATGGACCAAATAT TTTAGGATCTTGAACATTGATAGTTCACTTGACACCTTTGAGTTGAGCAGAAAAAAAATTGTTGTATCTCTGAGAAAATG CAACATTTTTCTCTCTAAGTGGGAGAACTTCGTGAGAACTTTGGAGCATGAGATGAAATCAGTAGAAAGTCCATGCTTGC AGTTGCATGGATTGAGAATTTGCCTTGAGATGGGTTGCCCTGATAAGCTAGTTGAATGGTTCAAGTTTGCAGCTAAGAAG AATGTTCAAATTCTTGATTTGGATTTTTCATTTAACTACAATAAAGAATTTTTCCTAATCAGTGAGGCCATTCGCAAACT TCAATATTTTTGTGTGTTGCATCGGGAGTTTACAATGAACAATATTGAAATGAAATCATTGTGTGTCCTGCGTTTGGCTT CTGTGGATGTTAGTGGTGAGGTTGTTGAGTATTTGTTAAAACATTGTCCTTCTCTTGAAACATTGTTTATCAAATCCTCA AAACTACTCATTGTGAACTTGCATGTTTATGGCAAAGCTCTAAGACTGAAACATTTGGAGTTGGTTAATTGTAACATTCT AATCGTTAGTATCTCTGCTGAAAATCTCATCACATTCATATACTCTGGGAGTTATGGAACAGATGTAAGATATAAAAATA TTCCAAGGCTAAGGAAAGCTTCCTTTGGAGGGATGTATGGTAGTTACCTGCTTACCCACTTGAACAATGTGGATCTTTTT GGAATGATATCCCAGTTAGAAGTGCTGAAATTGGAACTACAACTATGGAATACGGGAATTCTTCTTGATCTGCCTGAGTT CAATAATGTGAGGCATTTAGAGCTGCAAATTCCTCATGTATATGGAGGAGAACTTGATCGTTCTGTTTCTTTACTAGGTG CATTTCCTTCCATATGTGTGCTTAAGATCAAGTTCTATAGGTCATATCTTATGGCATGGGAGCCAGAGCTACAATGGAAA GCCAATCTGCAATGTGAGTTCCCAAACCTGAAAGAGCTGGAAGTGTCAGGATATAAAAAAGACCCAAGTCAACTTGAGCT GCTAACCAAGATATTTAAGAGTGCTCCTAATCTAAACAAGATTATTGTGGATTCCCTGCATCCACGCCATGCGTATAAGT CACCTGCTGTGAAGGCCAAGATTAGACAACTTTCTCATGATGCTACTAAATATTTTGTTGATGGTTTGAAACCATATGTG CCTCCACCAGTTGAATTGGTTGTCCTGTAA
Protein sequence (LotjaGi3g1v0055900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGGLIDPGSRERRRIMEHQGENEAGEDIETQPLEIEEKKDIIRDLPDEILGNILSRVSIKEAAMTSILSNKWRYQWTKY FRILNIDSSLDTFELSRKKIVVSLRKCNIFLSKWENFVRTLEHEMKSVESPCLQLHGLRICLEMGCPDKLVEWFKFAAKK NVQILDLDFSFNYNKEFFLISEAIRKLQYFCVLHREFTMNNIEMKSLCVLRLASVDVSGEVVEYLLKHCPSLETLFIKSS KLLIVNLHVYGKALRLKHLELVNCNILIVSISAENLITFIYSGSYGTDVRYKNIPRLRKASFGGMYGSYLLTHLNNVDLF GMISQLEVLKLELQLWNTGILLDLPEFNNVRHLELQIPHVYGGELDRSVSLLGAFPSICVLKIKFYRSYLMAWEPELQWK ANLQCEFPNLKELEVSGYKKDPSQLELLTKIFKSAPNLNKIIVDSLHPRHAYKSPAVKAKIRQLSHDATKYFVDGLKPYV PPPVELVVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 475 | 438 | 6.3E-96 | – | |
| PANTHER | 38 | 475 | 438 | 6.3E-96 | – | |
| SUPERFAMILY | 39 | 80 | 42 | 6.93E-9 | ||
| Gene3D | 40 | 359 | 320 | 4.1E-19 | ||
| Pfam | 43 | 75 | 33 | 5.6E-4 | ||
| SUPERFAMILY | 191 | 419 | 229 | 1.6E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0055900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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