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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0056800 |
| Transcript ID | LotjaGi3g1v0056800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox associated leucine zipper protein; TAIR: AT5G06710.1 homeobox leucine zipper protein; Swiss-Prot: sp|Q67UE2|HOX11_ORYSJ Homeobox-leucine zipper protein HOX11; TrEMBL-Plants: tr|A0A1J7HWQ9|A0A1J7HWQ9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0056800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5917356..5919436) extracted from Lotus japonicus Gifu genome v1.2.
AAGTGACAACTGAGGAAAATATATAGCTGACATAGTAAAAATATTATAAAAAGCATTGCAGTGGCAGTTATACAAATCAC GTTTCATACTAATAGATTCAATATATAGGTAGATATATTATCTCAAAGCAAAATAAATTTAGTCAAAAGTGGCCATTGGG TCTTCCTAAGGCCTTGAACTATAAAGATATATACATGCTTCCTTCAAGGCAACCTCCAATTCTCATCAGTCCAAACTCTC TTCCCTTAGCTACTTGTATTTTCTGCCTATGCCCTGTAAGAAAGAAGGTGATCATGGAGCTAGGCCTAAGCTTAGGAGAC AATTCAAGACCTTTCAGCTTCATGGAAGAGCCTCGTGAAGCTTCCAACCAATCAGGTTTACAATTTAACACCACCTTATC AATTGGTCCAGTCATTACTAAACAAATAGATCAACAACAAGAACAAGAACTACTAACAGTACAAAGAAACAAACACAAGA GTGACAGCACCACAGAAGATCAAAATCATGAAGCTACAAATGAATCCCTTCTTTGTCCTTCTCTCAAAGCCAATAACAAA CTTGATATTCTACCTCACTTTTCATGTATGTGTATCTTTCAGTACTAATCAAAAGGTACCTATATATTATTGTTCCTCTT GGGAGCTTTCAATTTGATTCTTTTAGCTGAAGAGGGTTGTTGTGAACATGGTGCAGCTGGTGGTACTTCAAGGGGCTTCG ACATGAACATGCCGGCGGAGGATGAGGCCGAGGAAGAGGCGGCGCTGTCATCGTCCCCCAACATGTTCAGAAGAAAGGGG AGGAGGAGTGATGAAGATGAGAACCGTGGCAGAACCAGGAAGAGGCTTAGACTTTCTAAGGAACAATTTAGTTTCCTTGA AGAAAGCTTCAAAGACCACAACACTCTTAACCCTGTGAGTGTTCAAAGAAAGATGAGATAGATGTACAATTAACACACAT ATCCTCAAATAATAGTCTTGGCTTTTTAAGGCAACATTTTTCAAGTGTTGCTTTAGATCTAAAATGTTGTAGTATCCTAA TTTTTATTTCATATGATTTTTCTCTAGTCCCAGTCCCCCCTTATCGTATCTTTTTAAATTGAAAGATAGCATTTTCCAAT CGAGTAGTCATGTATTTTAGGAACTAATTAATTTAAAGATACTAAAACCCTCCCATTTTATATGGAGCAATGTCCTTTAG TAATGTTACTAACTTTTTTTCGGTGTAGAAACAAAAGATTGCTCTTGGGAAACAACTCCATCTTCACCCTCGCCAAATAG AAGTATGGTTTCAAAACAGAAGAGCAAGGTATATCTATATATAGTACTACTGCTTTGTTCCCTTAACTATTGCAGTTAAA AGTTCTTGAAAGGAAAGTTTATATATACATATTGAAGAATGAAGATGGATATCATAATGGTATATGGGTTATTTAATTGG TGCCTGCAGGACCAAGCTGAAGAAGATAGAACTTGACTGTAAGTACTTGAAGAAGTGCTGTGACACACTTACAGAAGAGA ATACAAGGCTTCACAAGGAGCTTCAAGAGTTGAGGGCTTTGAAGACTAGTATTGATGATTGATGAACCATCCTAAAGCAC TGCCAAAACCATTGATGATTGATGAACCATCCTATATAAAGCCATTTTGAATTAAATTAATTAGATTGAAGGTAGTGCTG CTACATGTTTGTGGGATTGACTTTGTACATTGGGAAAGTTTTGAGATACTAAGATATTGTTTATTAGTCCGTAGGAATAT AATTCTGATATTTGGGTTTTGTAATTTTCCGAGTTTTAATCTCTCTTGCTCATTTATCTTGTTTGAGCTTTTCATATTAT TGTGGAATATTTGTGGTAAATTCAGAGTTTAGAAAGAAAATAGAGAAAAAAATGTTACAATAAAAATAGGAATCATGGAA AGTAGCTTGGTATTGGTTGTTCTAGAAAATAAATATATTCTAGCTCTATATATATAGATTATGGTTATTGCAATAGTACT AATAATTAAGCTTAAAAAAATGTTTTTTATGTTAAAAATGATCATTGTTTAATTAAAATAAAAAAAATTAGATAAAAGAA A
CDS sequence (LotjaGi3g1v0056800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCTTCAAGGCAACCTCCAATTCTCATCAGTCCAAACTCTCTTCCCTTAGCTACTTGTATTTTCTGCCTATGCCC TGTAAGAAAGAAGGTGATCATGGAGCTAGGCCTAAGCTTAGGAGACAATTCAAGACCTTTCAGCTTCATGGAAGAGCCTC GTGAAGCTTCCAACCAATCAGGTTTACAATTTAACACCACCTTATCAATTGGTCCAGTCATTACTAAACAAATAGATCAA CAACAAGAACAAGAACTACTAACAGTACAAAGAAACAAACACAAGAGTGACAGCACCACAGAAGATCAAAATCATGAAGC TACAAATGAATCCCTTCTTTGTCCTTCTCTCAAAGCCAATAACAAACTTGATATTCTACCTCACTTTTCATCTGGTGGTA CTTCAAGGGGCTTCGACATGAACATGCCGGCGGAGGATGAGGCCGAGGAAGAGGCGGCGCTGTCATCGTCCCCCAACATG TTCAGAAGAAAGGGGAGGAGGAGTGATGAAGATGAGAACCGTGGCAGAACCAGGAAGAGGCTTAGACTTTCTAAGGAACA ATTTAGTTTCCTTGAAGAAAGCTTCAAAGACCACAACACTCTTAACCCTAAACAAAAGATTGCTCTTGGGAAACAACTCC ATCTTCACCCTCGCCAAATAGAAGTATGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGAAGATAGAACTTGACTGT AAGTACTTGAAGAAGTGCTGTGACACACTTACAGAAGAGAATACAAGGCTTCACAAGGAGCTTCAAGAGTTGAGGGCTTT GAAGACTAGTATTGATGATTGA
Protein sequence (LotjaGi3g1v0056800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPSRQPPILISPNSLPLATCIFCLCPVRKKVIMELGLSLGDNSRPFSFMEEPREASNQSGLQFNTTLSIGPVITKQIDQ QQEQELLTVQRNKHKSDSTTEDQNHEATNESLLCPSLKANNKLDILPHFSSGGTSRGFDMNMPAEDEAEEEAALSSSPNM FRRKGRRSDEDENRGRTRKRLRLSKEQFSFLEESFKDHNTLNPKQKIALGKQLHLHPRQIEVWFQNRRARTKLKKIELDC KYLKKCCDTLTEENTRLHKELQELRALKTSIDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 159 | 126 | 7.5E-75 | – | |
| PANTHER | 34 | 159 | 126 | 7.5E-75 | – | |
| MobiDBLite | 90 | 110 | 21 | - | – | |
| MobiDBLite | 90 | 104 | 15 | - | – | |
| MobiDBLite | 132 | 178 | 47 | - | – | |
| MobiDBLite | 162 | 178 | 17 | - | – | |
| PANTHER | 164 | 270 | 107 | 7.5E-75 | – | |
| PANTHER | 164 | 270 | 107 | 7.5E-75 | – | |
| SUPERFAMILY | 168 | 234 | 67 | 3.98E-17 | ||
| Gene3D | 170 | 238 | 69 | 7.1E-17 | – | |
| ProSiteProfiles | 174 | 234 | 61 | 16.876 | ||
| SMART | 176 | 238 | 63 | 1.0E-15 | ||
| Pfam | 178 | 232 | 55 | 2.0E-15 | ||
| CDD | 178 | 235 | 58 | 6.04349E-14 | ||
| Pfam | 234 | 268 | 35 | 8.1E-8 | ||
| SMART | 234 | 273 | 40 | 1.9E-12 | ||
| Coils | 247 | 267 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0056800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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