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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0060400 |
| Transcript ID | LotjaGi3g1v0060400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger-like protein; TAIR: AT3G57670.1 C2H2-type zinc finger family protein; Swiss-Prot: sp|Q9SVY1|ZWIP2_ARATH Zinc finger protein WIP2; TrEMBL-Plants: tr|K7LWM6|K7LWM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0060400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6365214..6368475) extracted from Lotus japonicus Gifu genome v1.2.
TATTGTCATGCAGGGGGTAATTTCTTGACTTTCCATACACTTTTGCTTTGCTTTTTTACTTGAAACTTACTTACAATTAA GCTTATGGCTCTCCATTTTCCCACATAATATCCTCTCTCTCTCTCCCTCTCCCTCTCTCTCTCTCTTAACACACACTACA CACACATGCACGCAATATGTTTATAAATCACCAAAGTAGCATATATACCATCACCAAATGCCTTTACCACATCAAACATT CACCATGTCAGATCCTCAACCTAATTCTTATGATGAATGGTTCAACTTCATGCTCCACCACCCTCACTACTCTTCATCTT CTTCCTCTTCTTATTCTCCTCCTTCTCAATCCAACATATGGTCACCCTACCCCCCCATTTACTCCAACAACATGTTTGAA ATTCCTTTATCTTCAGCCTCATCTTCCTCTGCAAGACCCCTTTCACCTCCTCTCAGAGAAGCCCTTCCACTCATCAACAA GTTGAGCCTCACAAACCAGCAAAACAATGAACTCTCAAACATTAACATTGGAATAGAAGTGGAAGAGGACAAACATGAAG ATGATGATGAGGACGAAGAAGATGTAACTGTGAATTTTTCCCTACGCATAGGGCTTCCAAGGATGAGTACTTCTTCTGAT CTGGGTTCAACTTCAAGGATGAGTTCCACTTCTCTAGAAATGGCCCAAAGAGAAGAAGTTAATATGATTTCTGAACAATC TTTGGAAAGATTGAACAAGGGCCAGTATTGGATTCCTACCCCTTCTCAGATACTCATTGGTCCTACACAGTTCGCATGTT CTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGGTACGGTCCCATTTAGATCATAATTTAACACCCATCTAC CCTTCTTAGTCTTGTGTCAGTACTCAGTCATATTTCTGTTTTATTTGTTCCTATAATTTAAATATATAGGATTTATTCAC ATTCATCTGTTCCTTCCGTCTTATTTTCTCTCATTTTCTGTTTTTTATTTCTTTTCATTTTCCATCGCATTAGTTATATC CCTTATTTCTGTCACTTCTATATTTCTATATCTTTACTATTTGAGTGAAATTGGAGTGCTAGGTTACTTATTATGTGTTT TATAATTTGGGTTTTCTGTTCATCCCTTTTAATTTGCAATATCTTCTTTTGCATCTTCTTCTCATTTTATAATTTGGTTT TCCTGCTCATTCATTTATGAACTAATATTTGGTCTCAGACTCAGAACTGTAAATATGTCTTGTTTTCTTCAAAAAAAGAA ACCACTTCTTGAAATATTTTCCTTCTAATTTTATGCCATCTAAAACACTGGGCTGCACCTGACAACAAGTGAATGAGCAA AACAAAAAATTATTAACAGCAGTGTTTCTTTCAGTATTCAGATGTTCCTCATTAAAAGTCTGCACTCACTACAGTCTTTT CAAAGCACAGCACAGTAGAAAATATATTCATTGATAGGCACATGTCAGTGATAAGATCATATGTGAAACCTCATAAGTAC ACACAATAATTCTCTTGAGGACATAGTAATTAACCACAGATCGATGTTTCCACAATCTCTCACACCCCAGATATAATTTA AGTAGGATATATTAAGAAACCTTGTTTGATATCTGAACAAATTAAATTGTACAAACATTTTGCGAGATCTTATTTTGCAC ACTAGAAATGTCAGGAACACCGATGATATGCTCATATCCCATTTCCATCTATATCTTAAGTGAGTAAAAAAGAAAAGTGA GAGAAATGATGGACAATATAATTGGAAAAGAAAAAAAAAATAAAGAAGAAAAAAGATGAGTAGCCAAGATGAAAGAGAAA ATGCACCTGTCTGTAGATCAATGGTATGTTCACACTTAATATTACTTAATATTCACCCACACAAAGAATGAATTAAGAGA GAATAGAGAGAAAAATATGAATTGTGATGAGTGATATTATAAGAAAAAAGAGAGATAAAAAGACAAAAAAGGGAAATTGA GATAAAAGATAAACGTTGAAATGCGAATGTATCAATATTTGTTTATATATCAAAGTTGTATCAGCTGCAAATCTATGTTA ATCACCTTTCATATTGACTAGCTTGCGTTTTATTTAGCATACTCAACTTCTCTCTGTGGAAGTTGGAAACTATAGCCCAA AGGAATTTTATATATGCATCTAAATATATATACACGCAAATCGTTTTGTTGGCACCTATTCCACCTCCTATTTTAAAGAG ATAGAAATAGAAGAGAGAGGTTAAGAGAGATATATGATGTGCGAAATCATATAAACTGAGAATAGAGCTGAAAAAAAAAC TAAGTGAAAATTGGATGTAAGAGAGTTAGATGTAAATATATCAAAATTGCACTTCCTACTCAAATATATTCAGTCATCTT AATTTATCATGTTACAAAATTTTACTTTTAGTTTGGATAGTTTCATATTTAATTTGTAATTATATGCTGAAATTAGGAAG GACCTTTGATTAAATTTCATGCTGAGATGTACAACACAACTCTGAAGGGACAACAAAACACAAGTTGGTTATAGAGTGCA TACTGATCATGAGTCATAATAATTGTTAATTCTGTTTCATTGAGGGGAGTATAAATATCTCTTGGCTTTTCAGATGCATA TGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAGCCAACAGCTATGCTAAGGCTTCCA TGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGACTTCAGAACTCTCCA AACACATTACAAGAGAAAGCATGGCATCAAACCCTACATGTGCAGAAAATGTGGCAAAGCTTTCGCAGTGAAAGGCGATT GGAGAACGCATGAGAAGAATTGCGGCAAAATATGGTATTGTTTATGCGGGTCTGATTTCAAACACAAAAGGTCTCTCAAG GACCACATCAAAGCCTTTGGCTATGGCCATGGAGCTCTTGGTGTTGATTGCTTGCAAGAAGAAGATGAAGCAGCTTCTGA AAATGAACATGATGAGGAAAGCTCACTGTGAAAGTTGGAAAACTAAGATCAAGGTTAATTTTTCATATCCGGTTTCACAT ACATGCTTGTAATAATTGTTGGCTAATGAATTTCCTATTAGCCTTTTCTTTTATGTTTGTAACTTTCTTATGTTGTAGCT TTTCAATAATTAAAACGTTGGTTGCTTATTAATTTTTGGTAACATGCTTATTAATTAGCAAT
CDS sequence (LotjaGi3g1v0060400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTTACCACATCAAACATTCACCATGTCAGATCCTCAACCTAATTCTTATGATGAATGGTTCAACTTCATGCTCCA CCACCCTCACTACTCTTCATCTTCTTCCTCTTCTTATTCTCCTCCTTCTCAATCCAACATATGGTCACCCTACCCCCCCA TTTACTCCAACAACATGTTTGAAATTCCTTTATCTTCAGCCTCATCTTCCTCTGCAAGACCCCTTTCACCTCCTCTCAGA GAAGCCCTTCCACTCATCAACAAGTTGAGCCTCACAAACCAGCAAAACAATGAACTCTCAAACATTAACATTGGAATAGA AGTGGAAGAGGACAAACATGAAGATGATGATGAGGACGAAGAAGATGTAACTGTGAATTTTTCCCTACGCATAGGGCTTC CAAGGATGAGTACTTCTTCTGATCTGGGTTCAACTTCAAGGATGAGTTCCACTTCTCTAGAAATGGCCCAAAGAGAAGAA GTTAATATGATTTCTGAACAATCTTTGGAAAGATTGAACAAGGGCCAGTATTGGATTCCTACCCCTTCTCAGATACTCAT TGGTCCTACACAGTTCGCATGTTCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGAC ATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAGCCAACAGCTATGCTAAGGCTTCCATGCTTTTGT TGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGACTTCAGAACTCTCCAAACACATTA CAAGAGAAAGCATGGCATCAAACCCTACATGTGCAGAAAATGTGGCAAAGCTTTCGCAGTGAAAGGCGATTGGAGAACGC ATGAGAAGAATTGCGGCAAAATATGGTATTGTTTATGCGGGTCTGATTTCAAACACAAAAGGTCTCTCAAGGACCACATC AAAGCCTTTGGCTATGGCCATGGAGCTCTTGGTGTTGATTGCTTGCAAGAAGAAGATGAAGCAGCTTCTGAAAATGAACA TGATGAGGAAAGCTCACTGTGA
Protein sequence (LotjaGi3g1v0060400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLPHQTFTMSDPQPNSYDEWFNFMLHHPHYSSSSSSSYSPPSQSNIWSPYPPIYSNNMFEIPLSSASSSSARPLSPPLR EALPLINKLSLTNQQNNELSNINIGIEVEEDKHEDDDEDEEDVTVNFSLRIGLPRMSTSSDLGSTSRMSSTSLEMAQREE VNMISEQSLERLNKGQYWIPTPSQILIGPTQFACSVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFC CAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHI KAFGYGHGALGVDCLQEEDEAASENEHDEESSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 352 | 343 | 3.1E-156 | – | |
| PANTHER | 10 | 352 | 343 | 3.1E-156 | – | |
| SUPERFAMILY | 186 | 214 | 29 | 1.12E-5 | ||
| Gene3D | 190 | 214 | 25 | 3.9E-6 | – | |
| Pfam | 192 | 211 | 20 | 2.8E-5 | – | |
| ProSiteProfiles | 192 | 219 | 28 | 10.845 | ||
| SMART | 192 | 214 | 23 | 0.12 | ||
| ProSitePatterns | 194 | 214 | 21 | - | ||
| Gene3D | 256 | 327 | 72 | 9.4E-7 | – | |
| SUPERFAMILY | 260 | 296 | 37 | 1.02E-6 | ||
| SMART | 276 | 296 | 21 | 40.0 | ||
| ProSiteProfiles | 276 | 296 | 21 | 8.974 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0060400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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