Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0063400 |
| Transcript ID | LotjaGi3g1v0063400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein Iojap/ribosomal silencing factor RsfS; TAIR: AT1G67620.1 Lojap-related protein; Swiss-Prot: sp|Q9CAF9|IOJAM_ARATH Protein Iojap-related, mitochondrial; TrEMBL-Plants: tr|I3S833|I3S833_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0063400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6713344..6715953) extracted from Lotus japonicus Gifu genome v1.2.
GTAGGCTATAAGCTGTTTGCATAAGCTCTCTCAAACACTGACATAAGCGCTTATGCTATCAGATAAGCTCAAATAAGCTC TTCCAAACATGACCTTATTCTCTTTTGTGTCTCAAAAAAAAATGAAGTAAATGGGCCAAAAGCCCAAAAAGAGAGGCAGT TAACAAAAAGCCACCATTTCCTTCAGTTCAGATTCACCACCGATACCGCCACCGCCATCACTACCTGAGTTCGCAGCGCC GCCGTCACCACCTCCGTTGAGCCCGCAGCACCATCCTCACGCAATTCCGATTTTCTCCCTGTGGACTGAAATCAATGTGG TCGATTCTACGAGCTCGAACGAGTTCGCAATCACAGTCCCTTGTTCAACTTCAGCCATGGAAGCACCTTGGGTTTTCCTC TCTGTCTACCATTGACGGTGGAGGAATCAAAAAATTCCCTCTGGATCTGCCGGAGATCGAGAAGATTCTAACCGATGTTA AAGCCGACGACGTGAAGGTGATGCCCGCTCCCAAACACTGTGATTGGGCTGATTTCATGGTGCTCGCCACCGGTAGGTCC ACCTGGCATGTCAGGAACATTGCTCAAGCCCTAGTTTACAGGGTAAGTCTTCGATTTTGATTCAATTGGAACTTTTTAGG GTTTGAAAATTGAGATAACAGTTTTAATTTCTTATTTTTTGATTGAATTTTTTGTTTGAATTTTTTGTGGAATCATCAGG CTAAGCAGAAACAAAGAGGAGTTGTACGAAAGATACTACCTAGTGTGGAAGGGGAAGAAGGAGGAAAGTGGATTGTCATT GATTCTGGTATATGATGATGATTTCTTTTTTATTTGTATTGAGAATTGATAATTATAGAATGACTCAGTGTTGTTGTTAA TTGCGGATGGCGAGTCGTGGCAGAAAGCTGAAATCCCGCCATACATGACAAATAATGGCAGAATATTGCGGGATATCGGC CATGGCGGAAACCCTAAAAACCGCCATGGCGGATATTTGATAACACTATTGACAATTCACTTAGGTTGTTGACTCTCTAA CTGGTTATAGATTAGGTCAATATCCCTAGAATGCATGGATACAACATGGGGATAGAGTCATAGAGTGAATTTTTAGAAAT TACAAAGTATGGCATCACTATGATACAAAATATAAAGTTAGTATAGTTTCATAGATTGACAAGGCATCAAGGAAAATAAT CTCTTTGCTCGACTTTGGGCTTAATCACTTATTGAAGATAATGTAATATATTTTGTGTTAGTGATTGTTTCTAATTATTT TTGTTGTAAATAAATTTTGAATTTGGTATTTCAGTTCTCTTCATGCCTTGTTTTTCCTTGCTGTTTCGTTTCTTTTTGTT CAGGTAGAGTGATTGTTCATGCACTTGAAGAAAAAGCTAGAGCTTACTATAATTTGGAGGGTCTTTGGACTCAAGGGACA ATGCCAAGTGAACCTGTTGAGGTAAACATGAGGCTAACTTTAACTCTTGTTGTTCCAAGAGTATTATAATTTTTTCTCAT CTGTATGTTTAATATTTTATCCCAGATATTTGAAGTTTGCTGAATCATTTTGGAAGTCACTATTTTACGGATTAAGTGAA CTTTGTTCTATTGTATTGTCCAAGAGAAATCAGTAACTGTCCAAGAGAAATTATTAAAGGCTATATTGTGCAAGTTTTTA CTGAAGAAATCTGATCTTGACTTGTGAATTGTAAGATCCAAATTTGGAAACCATTAACTAAGATTTCACAATTTAAAACT TCGCTGTCATTGATCACAAATGACATCTTCACTTTACATTCATTACTTACCCCAAGCATAGTAAACAGGTTGGGAACTAT TGGGCAATCCTTGTAGGATAGTGTCGTCTGGGGCTTGTTGTGCTAAGTAATGTTGTCAAAATTGCTATATGTGCGATCCT ACAAGTTTTGCTCCCTTCTCCATGCTAGATTGTCCTTAGGCTTATTAGTAGTTTTGTTGGATTTGGATCAATTGGCTCAA GAAATTACACATATAGTTCTATACCATATGTATTTTTTTATTTCTTATATCATGTTGAGGTAATTTTTTTAGCATGACTG ATTGGAATGATTCTCACTTTTCTATTGTTTAAGGATCTACAAAAAGCTTTCGTGAAGGTTCGTCGGATAAACAATTCAAA GAAGAAACCTGCACAATAGAAGGCCTAATTGGTGTTTCAAGCAAGAGGACTTCAAAAAACCTTAAGAACTGTAGTTTCTG GCCTTGTATCAGACGTAAACCATTTGGTAATTTGTAAAATGATTGTCAAGTATATCTTTTCTTTTTTGTTCTGAATACAA ATTTTGCCAGGTTGTCTTGTTTGCTGCAATGTAGTGTTATTAGAGGACGTAACTCTTTACATTTTCTTGTTATCTTGCCT AGAACTGTCTTTAGTTTTATGTTGGTTATTGTGGAGCTTGTGCTTTTTCTATTATTTGATCATAAATATGTGAATAAAAT AAACTTAAGACACAACATTGAAAATTACTTCTAAATTTATTTTAACAAGATTGTTTAAGGATCAACAATATCTCGTTTTC CCCCTCTATGTCATGTTCCTGACATTGTAACTTGTTTTTTTTCATCCCTG
CDS sequence (LotjaGi3g1v0063400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGTCGATTCTACGAGCTCGAACGAGTTCGCAATCACAGTCCCTTGTTCAACTTCAGCCATGGAAGCACCTTGGGTT TTCCTCTCTGTCTACCATTGACGGTGGAGGAATCAAAAAATTCCCTCTGGATCTGCCGGAGATCGAGAAGATTCTAACCG ATGTTAAAGCCGACGACGTGAAGGTGATGCCCGCTCCCAAACACTGTGATTGGGCTGATTTCATGGTGCTCGCCACCGGT AGGTCCACCTGGCATGTCAGGAACATTGCTCAAGCCCTAGTTTACAGGGCTAAGCAGAAACAAAGAGGAGTTGTACGAAA GATACTACCTAGTGTGGAAGGGGAAGAAGGAGGAAAGTGGATTGTCATTGATTCTGGTAGAGTGATTGTTCATGCACTTG AAGAAAAAGCTAGAGCTTACTATAATTTGGAGGGTCTTTGGACTCAAGGGACAATGCCAAGTGAACCTGTTGAGGATCTA CAAAAAGCTTTCGTGAAGGTTCGTCGGATAAACAATTCAAAGAAGAAACCTGCACAATAG
Protein sequence (LotjaGi3g1v0063400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWSILRARTSSQSQSLVQLQPWKHLGFSSLSTIDGGGIKKFPLDLPEIEKILTDVKADDVKVMPAPKHCDWADFMVLATG RSTWHVRNIAQALVYRAKQKQRGVVRKILPSVEGEEGGKWIVIDSGRVIVHALEEKARAYYNLEGLWTQGTMPSEPVEDL QKAFVKVRRINNSKKKPAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 175 | 168 | 5.5E-53 | – | |
| PANTHER | 8 | 175 | 168 | 5.5E-53 | ||
| Hamap | 38 | 148 | 111 | 18.9 | ||
| Gene3D | 45 | 162 | 118 | 2.6E-33 | ||
| Pfam | 47 | 147 | 101 | 8.4E-25 | – | |
| TIGRFAM | 47 | 147 | 101 | 2.1E-23 | ||
| SUPERFAMILY | 47 | 152 | 106 | 8.01E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0063400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…