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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0063800 |
| Transcript ID | LotjaGi3g1v0063800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT3G17380.1 TRAF-like family protein; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|K7KEH2|K7KEH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0063800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6751220..6754360) extracted from Lotus japonicus Gifu genome v1.2.
TTTCGAAAAAAAAAGTCAAACAAAAATGTAAACCACTTTTTTTTCACAAAACATCTATGTATATATATGCTGCAGGCTCT TGCATGCTATGCTAGCTTAAGTTTAAGACTTCAATCTGAGAAAATGGTTTTGTCTGACCTGGAGACTATCCACAAGCCAA CCTACCATGAAGTTGGTATGAATTCTTCTTCGTTTACTTACCTCTTTTTTCCTTATTTTTTTCAATGCTAGCTATGTCCT ATATATTCATTATATATATATCTAGATTCTCAAAATCATATCTATCTGCATTTAATTTCTATGCAGAAATTATTAGTAGA TCTGTGAGGGATCTGCCACCAGCTAATTACTTGTTCAAAATCGAATCGTATTCCGTGTTGGTGGACACAGGGGTGGAGAA GTATGAGACTGATCATGTTTTTCATGCTGGAGGATACAAATGGTTAGTTTATGTGATCTAATTCCTTTCTGATCCAGTTA GAAGTTGATCAATCTGAAATCTTTAGATATTATTGATTCTTAATTAAAATAATTGCGATACAGGGGTAAGCTTACTGTTG TTGCTTTTCTTTATGCTATATAGGAGGTTGATACTCTATCCAAGTGGTAATCATAAAAGCAATGGCAGCGGTCACGTCTC CTTATACTTGGCAATAGCAGATACTGATGACCTTCCTGAAGGTTGGGAAGTTAATGTAAACTTCAAGTTGTTCGTGTTTG ATCAGAAGAATAACAATTATTTGACCATTCAAGGTATAGATTATTTAAAAGAATTTATTGAAGTTTATAATGAATTTAAG AACTTAAATATAAGTTTGATTAATTTTAAAGAAATATATAGCTCTTAGAAGTTCTAATAAATTATACACCATTTGCTTCA TGTAGCTGCTGATGGCGCAGTAAGAAAATTTCATGAAATGAAAAAAGAATGGGGGTTTGACCAAATGATTGAATTGGAGG CACTATTGGATTCATGTAATGGATACAATGTGAAAGACACTTGCGTGTTTGGAGCAGAGGTTTTTGTGATTAGTCACTCT GGCAAATGGGAAAGTCTATCTTTGATCAAGGAGCCACCTAAAGCTTCCTTCACTTGGAAACTTGAGGATTTCTCAACATT GGACAAGGACTATTACCTCTCTGATCCCTTTACTGTGGGAGAGAGAGACTGGTAAGCAAATCAAGAACTCAACACACATT TTTTATTTCTAGAAATACTTATTTCTTCTTTGCCCATGGTGTAATATCTATTTATATTTTATTCCTTAATTAATCTGTCA ATATGTGACTTTTGACTTTTTTTTTCCAATTTTTAATTGGAGGTTGTACATCTTAATTTTTATTGGATTTGGATCCCAAG CGGTTTGGACAATCCTATATTTAGATGGTCATGAAATCTGAATCATTCAATCAAGATCGTTCCGTTCTTATATTTCATTA AAGATTAGATGACAAATATAAACATAAAATTTAAATCACCTGATGTTTAATTGAGTGGTTCAGATTCCTTGACTTAGAAT ATAGGAATCCCTTGCTTGCAAAGAATATAAATTTGTTTAATGAAGGCTCTATTATGAGTTGGCCTAGATTTTGGAGGAAA GAAAAGAGAAAATGGACGCTTATTTTGGGAGTTTTTTTTCAAGGGAGGGAATGGTTTGAAATTTTTTTGAAAACCCTTTA AGGCCTTTCCTTTCATTTATCATGTAAAGTTCCACCAAATTGTGGTTTTTGGGGAATTTGAACTTACAAATAAAGGGAGA GCTTAGCTTACCTCTCTTCTTATCCCCTCATCTTCCCCTCAAGTCTTCTCCTCCCTCCCCTGTTGTAAAAAGTCACAAAC ATAGCCTAATTGTGCTAGTTTATCCAAAATGTTAATGACAATCATGACTTTTGCACCACACATACTTTTTACTTTTTCCC ATATCGCCATTAAAAGATAATTTTGTCCAATTTATATAGGAAGTTGAGGGTTTATCCCGAAGGAATTAATGCAGAAGAGG AAGACAAAGGTCTATCTGTTTACCTAGAGCTTACAGATTGTGAAAAGTTTCCAAAGAACAGAAAATTGTTTGGGAAATTC AAGTTGGGATTATTGGACCAGCTTCACGATAAATACTATGAGAAAACAGGTACTGATGAACATAATTCGGAATATTTTTA GAGTTTAATTTCTATGCAATCAGATTTTAAGGATGTGAAAAAATCTCACTTTTTATTTAATTTCATTAATTAACGTGACA CATTCTTGAAATCTGATTGGTTGACGGTGCATCATCTTTTTTTCTCATATTGTTTTGATTCCATCATTTATATATATTGT ATGCTAAATTGCATTGTTTTTTTCCTGTTGCAGCAAGCCATTGGTTCGATGCCCCCTCGAGTCAGGTATGGTGGGGATAT AAAAAGTTTGTTCCTCTAAGTGACCTCCATAAGGCGGCAAAAGGCTATCTTAAAGATGATGCTATCGTAGTGAATGTTGA AATCCTTACAGTTTCCATAGTTAAGATTTCCTCCTAGATAATTTTCTTCTTATTACTTAAAAAAAATAAAGATCATTCCA TTTCCTTGTGGTTGTGTTGACTATTATCTTGTATTTTGGTGAATTTCTAATGAAGTTGGTTGTGGTGGACACTTGTATTT TGGTGTACTTCAATTATGTTATACTTCAATGTTGGTTGAGATTCAAGTGTTCTTGAGTATATTATGAAATTCTAAGAGTT CTATTTAAATTTAAAATGATACTATTACCTGTTTTAAGTTATTTAGACATGAGGTTAGTATATATGTTATATCCTGGATG GTCACATGAGTTTTGTCAGAATCGAACCAGTCAGACCAACCTTGCAGGAAGACAGCGGAAACCACTATAAGAAAAACATC ATTAGTGTCGGTAAGAACTAAGAAGCTGGTGCTAACAATGCAAAAACTGATGCTATAGTTGATTTGGTGTTGGCTTAACG TCCGCATTGAAGTTGACGTTAAAAGACAGAAGCTAACTCTTTGAGTCGATCACTTGATCGACACTACAATTTAGCTGAGT CGATCGCTTGATCGACACTACAATTTAGCGTCAGTTAAGCCGATGCAACTCACAAACTTCCATGGCGACACTAAATTTTA AATGTTAGCATCGGCCATATA
CDS sequence (LotjaGi3g1v0063800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCAGGCTCTTGCATGCTATGCTAGCTTAAGTTTAAGACTTCAATCTGAGAAAATGGTTTTGTCTGACCTGGAGAC TATCCACAAGCCAACCTACCATGAAGTTGAAATTATTAGTAGATCTGTGAGGGATCTGCCACCAGCTAATTACTTGTTCA AAATCGAATCGTATTCCGTGTTGGTGGACACAGGGGTGGAGAAGTATGAGACTGATCATGTTTTTCATGCTGGAGGATAC AAATGGAGGTTGATACTCTATCCAAGTGGTAATCATAAAAGCAATGGCAGCGGTCACGTCTCCTTATACTTGGCAATAGC AGATACTGATGACCTTCCTGAAGGTTGGGAAGTTAATGTAAACTTCAAGTTGTTCGTGTTTGATCAGAAGAATAACAATT ATTTGACCATTCAAGCTGCTGATGGCGCAGTAAGAAAATTTCATGAAATGAAAAAAGAATGGGGGTTTGACCAAATGATT GAATTGGAGGCACTATTGGATTCATGTAATGGATACAATGTGAAAGACACTTGCGTGTTTGGAGCAGAGGTTTTTGTGAT TAGTCACTCTGGCAAATGGGAAAGTCTATCTTTGATCAAGGAGCCACCTAAAGCTTCCTTCACTTGGAAACTTGAGGATT TCTCAACATTGGACAAGGACTATTACCTCTCTGATCCCTTTACTGTGGGAGAGAGAGACTGGAAGTTGAGGGTTTATCCC GAAGGAATTAATGCAGAAGAGGAAGACAAAGGTCTATCTGTTTACCTAGAGCTTACAGATTGTGAAAAGTTTCCAAAGAA CAGAAAATTGTTTGGGAAATTCAAGTTGGGATTATTGGACCAGCTTCACGATAAATACTATGAGAAAACAGCAAGCCATT GGTTCGATGCCCCCTCGAGTCAGGTATGGTGGGGATATAAAAAGTTTGTTCCTCTAAGTGACCTCCATAAGGCGGCAAAA GGCTATCTTAAAGATGATGCTATCGTAGTGAATGTTGAAATCCTTACAGTTTCCATAGTTAAGATTTCCTCCTAG
Protein sequence (LotjaGi3g1v0063800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQALACYASLSLRLQSEKMVLSDLETIHKPTYHEVEIISRSVRDLPPANYLFKIESYSVLVDTGVEKYETDHVFHAGGY KWRLILYPSGNHKSNGSGHVSLYLAIADTDDLPEGWEVNVNFKLFVFDQKNNNYLTIQAADGAVRKFHEMKKEWGFDQMI ELEALLDSCNGYNVKDTCVFGAEVFVISHSGKWESLSLIKEPPKASFTWKLEDFSTLDKDYYLSDPFTVGERDWKLRVYP EGINAEEEDKGLSVYLELTDCEKFPKNRKLFGKFKLGLLDQLHDKYYEKTASHWFDAPSSQVWWGYKKFVPLSDLHKAAK GYLKDDAIVVNVEILTVSIVKISS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 17 | 4 | - | – | |
| Phobius | 18 | 344 | 327 | - | – | |
| Gene3D | 36 | 193 | 158 | 2.0E-35 | ||
| PANTHER | 39 | 341 | 303 | 2.5E-114 | – | |
| PANTHER | 39 | 341 | 303 | 2.5E-114 | – | |
| SUPERFAMILY | 47 | 193 | 147 | 1.24E-33 | ||
| ProSiteProfiles | 48 | 184 | 137 | 25.837 | ||
| CDD | 51 | 184 | 134 | 5.89963E-24 | ||
| SMART | 53 | 165 | 113 | 4.4E-6 | ||
| Pfam | 67 | 186 | 120 | 2.6E-15 | ||
| Gene3D | 197 | 338 | 142 | 1.7E-36 | ||
| SUPERFAMILY | 202 | 338 | 137 | 6.38E-33 | ||
| ProSiteProfiles | 204 | 334 | 131 | 32.383 | ||
| CDD | 206 | 334 | 129 | 4.07196E-28 | ||
| SMART | 206 | 315 | 110 | 8.4E-15 | ||
| Pfam | 212 | 334 | 123 | 4.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0063800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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