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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0064200 |
Transcript ID | LotjaGi3g1v0064200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phosphoglycerate mutase family protein; TAIR: AT3G60450.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q5UQ52|YR708_MIMIV Uncharacterized phosphoglycerate mutase family protein R708; TrEMBL-Plants: tr|G7LBM5|G7LBM5_MEDTR Phosphoglycerate mutase family protein; Found in the gene: LotjaGi3g1v0064200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6805136..6809031) extracted from Lotus japonicus Gifu genome v1.2.
TGTATCAAAACTAGAAAACCAATTTCCATTTTCTTTCTCTCTCTAAAGATGGATCCAGAGTTCTACCAAAACGTCGTCGT AATGAGGCACGGCGATCGCGTCGACGACGCCGAGCCTATGTGGTCAGCCAAGGCGACCCGTCCATGGGACCCGCACCTTG TTCAACCGGGTCGGGTCCGGGCATTCTCCACGGGTCGCAAGTTTCGTAAAACTCTCGGGTTCCCGCTTCATCGGGTCTTC GTCTCACCCTTCCTCCGCTGTGTCCAGACCGCCGCTGAAGTCGTCGCCGCCCTTTCCGCCGTCGGTGAAGATGAAGACCC CAACGCACTCACCGGTGACTCTGTCACCATCGATCCTTCTAAAGTTAAGGTTAGATATTGTTTTCAATGTTGAGTTTATT GAGATCAGAAAATGAATTACAGAAGTTTTATTTTATATTATAATTGTAGTTTTTTATTTTTTAAATTCTTATGCTGGTGT GTGTTTTGTTTATGAGCTACTATTTTAATGGTTAAAATTGTGATACTTGTTAAATTTTCAGTCTTTGATTTTTTTATCAA CATTTATAATTCCACATTTTAGCTAAATTAAAAATGGTACTCGTTTTACAACTTTTAGTTAAGAATGTAGAAAGTTGTCT CGGAAGATAGCTCAAGTGGTAGGAGCTGATGACATATGGGTTGTGTAGGGGGAAGTTCAGAGATCGATTTCTGGCGGATG CAATTTATCTTTCCGATGTACCAAAAAGGGTTGAGCTAAGGGAATGAAGGGATTTGCAGGGTGAAGGGTCAGGGTTTGAA TCTTGGTGAAAGAACTAATTTACTAACAATTAACAACTAACATTGGCCTATCAAAAGAAAAACCAAAAAAGAAAGTAGAA AGTTATTTGTTCTTGATATCTTGGCTCAAGTCGAAATTGTGTTGCGAGTGCAATTTAGTAAAAAAAAAAAATTAGTGATA ATTATTTTATTTTATTTTATTTTACTTTGGAGCTATTTTTGTTTTTTAGATGAATAGATTTTGCAGTTATGTTGCTACAC TCAATGATGGTGTTTGATTTGTCTTAATGGGGCGTTTGAAGTATACATGTCAAGTGTCAACACCTAAACCTTGGCCTAGT GGTGAATGCTGCATCTACATGCACGCTATAACATTTGTTTTCATGTGTAGAAGTAGAATTGTAGCTACTTGTGTGTTTGG ATTTTCGTTACATTCATTAGAGGTCACTTTTTCTATTCAATTCATTATGAAACATGGGCTTCTGTTGGAAATGCTTTTAG ACCTTGTTAACGAACATCATCGAAATTCGAAACATTATGAGCGCAAGAGTTATCATGAACTGAATTTCATCTCAATCCAT AAGAAGAGGTCTGTTTAATTTTTATCTTAAAAGTTAAAAGTGTGTACTAACGTTCATATGCATTGGTACCAACACATATC CTAACATAGCCTTACAAGTTCTGAGTACTTTGTATCTAGATAACTAGATATGTATCAGAAATTCAGAAAATAGTATGCTA AAATTCTCCCCTTCCCTTCCACAACTACAGGTTTCTGTTGAATATGGGTTATGTGAAATGATGAGCAGGGAGGCAATCAG GCTTGACGTTGCTCCTAAAGATGGAAATTGGGGTTTTGATATAGCAGAACGTGAAGCCATGCTTCCAGCCGGGACAGTGG ATCGAAATGTACAAAGGATCTATAAAGAGGTATAGAGGATTCTTCAGTCAACTACGAATTTTCAGCACTTGGCTATCATT TATATGCATGAAAACAGCATTAGTGCTAATGAAATTTTTTTTCTTTTTTTGATTGAGGAACTTTAGTTACCCAAGTGGGA AGAGCCACATTCACGCACAAAGGCTAGATATGAGCAAATAGTTACAGACCTTGCAGATAAACATCCTACTGAGAATTTGC TGCTTGTCACACATGGTATCCTATTCAATTTCTTCATTACTTAACTGCAATCTTCTCTATAATGCTGGATTTGTAGGTGT AGGAGAATATGATGGAAGGGCTCCTTTTGTTTTGGATGCAATCCTTTTCTTGCCCTTGCATGATTAATCAGTTTGAATAA AATTTACAGTAAAGTGAAAAAGAACCGGAAGTTACTGGTCAATGAATGGAGAAAATGGCCTATTTCTCAAGCATGCAAGT GATTTTGGCAAGTTGAAATGCATGTTTGATTCTGACAATATTGATTATGGTAAAAATGAGTTGAAACTAATGTGATTTAT GCTTGGATACGTTTACTATAAAAATGATTTTCTTAAGAAAATAATAGGAATGTCTTGTAAGAAGAGCTAACATCACTTTC ATATTATCAACTCTAAAGCTTGGTTTTTTTGCTTCGGCCTCTGCATGATTTTGTCTGCTTGCCTCGAAGTGCTTCTAAGA ATTTCACCTAAACATAAACTTCTAATGATGAAAACCGTGTTAGAGAAGAATAGAAATGCTTATATGAATGAGCAAGGTGA AACCAAACATCTAAGAATTCTAATTGATTTCGCCTTTCGCAGGGGAAGGTGTCGGGACAGCTCTTTCTTCATTCAAAAAG GGAACTCTGGTTTATGAAGTTATGTACTGTGGATACGTGGAGCTTAGACGCCCAATTTTCAAGAAGAATCAGTCGTTTAC TGCTGGAGAATTCGAAGTACTTACGAATAATGGTCAAACTGGGGTAAGCTATTCCATAGAACAGCTCTCTGAGCAATGAG CATCAGTTAAACTTCATATTAGTGGCCAATTATATGCCAGATACCCACATAATACTCTGATTAAGCATCGGTTTAACTTC ATCCTCCTACATACCAATACAAAATGATGTTTACAGCTAAATTATTTATTTGCTAAGGATTTAATGTGTGTACTTTGTCA GTGTTACACAGACATTAAAAATAAACTTCTAATTTAGTTAAAATAAAAAAGAATGTAACACCAACAATGTGTTGGCCTAG TGGAAAACTAAGCTATACTTCCGGATGAGAGCACAAGTTCGAATCCCTAGCCAAATGTAATCATAAAATGATTGGATGTT GTTAATAGGTTTTACACTTACATAGTACATGAAATTTATACTCATTTACTAATTGCATGAATTGTTTTCTCTCAATTATT ATTTTATGTTCCTTTCATAATTTTATTTAACTTATATATAGGGTTAATTGGTTTCTGTCCTACTTAAACCAAATCTTATA TATACCTACCGAAAAAATAACCAAATCTTATATTAAATATATTTTCTGTTATCTCCTGGTTGTTTTGTTTTTGGTCAATC TCCTGGTTGTTTTGACCCCCATTTTTTTCTCTCTGCTTCTCCCACGATCCTAACAAAGTGCTAGTGACTGTTACTATTTA TTTGCCACGAAGGAACTTATACTTGAGCAGTGCTGGATGTTGAACTAGTCATGGACAAAATAGAGGATGAATAAATTTTA ACCAATCATGACTGCTCTGTACCGATTAAGTCCGATTTTGTTGGAATAGAATAGGGAGCATTGGTTATATATTGACACTT TCTTTTCGTCCATTTTTCATGAGCTCAACACCCGTAAAAATAGTGTACTATTTTCCTTCATACTTTGTATTTTATCAATA CCTTTTATCATATAATTTTGACAAATAAATCCTTATAAATTTTGAAGCATTTGATAGGATATGGGAATAAGGTTTACTAA GAGGAAATTTTGAGATTTTTTCAAAAAGATTAAGTGAAGTTTCATATTCTGGTTGGTGGGTGGAGGGGAAGAACGTTTGC AATGAATTAGTCAAATAAATATGTGAAGATTTCTCTTAAAAAATTAGAATTTGAAAGTTTTCAATAGAATAAAACTTATT GGGAGGTCAAATTGCAACAATTTTACAACTCGAGGGACTAAAGTTTCTCAACTATG
CDS sequence (LotjaGi3g1v0064200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAGAGTTCTACCAAAACGTCGTCGTAATGAGGCACGGCGATCGCGTCGACGACGCCGAGCCTATGTGGTCAGC CAAGGCGACCCGTCCATGGGACCCGCACCTTGTTCAACCGGGTCGGGTCCGGGCATTCTCCACGGGTCGCAAGTTTCGTA AAACTCTCGGGTTCCCGCTTCATCGGGTCTTCGTCTCACCCTTCCTCCGCTGTGTCCAGACCGCCGCTGAAGTCGTCGCC GCCCTTTCCGCCGTCGGTGAAGATGAAGACCCCAACGCACTCACCGGTGACTCTGTCACCATCGATCCTTCTAAAGTTAA GGTTTCTGTTGAATATGGGTTATGTGAAATGATGAGCAGGGAGGCAATCAGGCTTGACGTTGCTCCTAAAGATGGAAATT GGGGTTTTGATATAGCAGAACGTGAAGCCATGCTTCCAGCCGGGACAGTGGATCGAAATGTACAAAGGATCTATAAAGAG TTACCCAAGTGGGAAGAGCCACATTCACGCACAAAGGCTAGATATGAGCAAATAGTTACAGACCTTGCAGATAAACATCC TACTGAGAATTTGCTGCTTGTCACACATGGGGAAGGTGTCGGGACAGCTCTTTCTTCATTCAAAAAGGGAACTCTGGTTT ATGAAGTTATGTACTGTGGATACGTGGAGCTTAGACGCCCAATTTTCAAGAAGAATCAGTCGTTTACTGCTGGAGAATTC GAAGTACTTACGAATAATGGTCAAACTGGGGTAAGCTATTCCATAGAACAGCTCTCTGAGCAATGA
Protein sequence (LotjaGi3g1v0064200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPEFYQNVVVMRHGDRVDDAEPMWSAKATRPWDPHLVQPGRVRAFSTGRKFRKTLGFPLHRVFVSPFLRCVQTAAEVVA ALSAVGEDEDPNALTGDSVTIDPSKVKVSVEYGLCEMMSREAIRLDVAPKDGNWGFDIAEREAMLPAGTVDRNVQRIYKE LPKWEEPHSRTKARYEQIVTDLADKHPTENLLLVTHGEGVGTALSSFKKGTLVYEVMYCGYVELRRPIFKKNQSFTAGEF EVLTNNGQTGVSYSIEQLSEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PIRSF | 1 | 261 | 261 | 1.6E-104 | ||
PANTHER | 4 | 254 | 251 | 4.1E-93 | – | |
PANTHER | 4 | 254 | 251 | 4.1E-93 | – | |
Gene3D | 6 | 230 | 225 | 1.1E-34 | ||
SUPERFAMILY | 8 | 207 | 200 | 1.24E-19 | ||
CDD | 9 | 82 | 74 | 5.15271E-12 | – | |
Pfam | 10 | 83 | 74 | 1.3E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0064200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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