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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0065300 |
| Transcript ID | LotjaGi3g1v0065300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin-related protein 2/3 complex subunit 5; TAIR: AT4G01710.1 ARP2/3 complex 16 kDa subunit (p16-Arc); Swiss-Prot: sp|Q9M117|ARC5A_ARATH Actin-related protein 2/3 complex subunit 5A; TrEMBL-Plants: tr|I3T639|I3T639_LOTJA Actin-related protein 2/3 complex subunit 5; Found in the gene: LotjaGi3g1v0065300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6901663..6906806) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGGAGCTGAAGGATTCGTGGAAGCCGATAATGCAGAGGCCATTATCGCCAGAATCGAACACAAATCGCGCAAGAT CGAAAGCTTACTCAAACAGTAACAACACCCTTTTCCTTCTCTATTCAAATTCTATTTTGTTTTAGGATCAAAGTTTCATT CATTGTCTTGTTTGATGCAATTTCAGGTATAAACCCGTTGAAGCCCTTAAAACTGCACTTGAAGGCACGTATGCTATGAC TAGTGATGAGCGTTGCAAGGTTTTCACTTACCCATTTTCTCCATTTTTATTGTTTTTTTATTTTATGAAGAAAATTTCAC ACTAGTATTAATTCAAATTGTTTTAGTTTTTGATATTCAATAGTATATTTCCAACTAGCAAAAAGACTAGTTTTTTTTAG TCTTTTGTTACTTAAGAGTTTTGGTTCAAGTGCAGATTTTGATACCCTTGATTGAAACCACAACATAATTTTCATGAACC TTCTTGCTTTGAATGTATTTTAGAGTTTTGATACTTTAACATTTGTGCTTATATTTGAATTGGGTTTTTAGGGAACAAAA ATTGTGTTTTTCTTTTCAAGTTTTTAAAGCTATTTTCCACTAGCAAGGACTAACCTTTTTTAACCAAAAATTCAAATTAG TTTTTTTCTTAAACATTTTAGAGTTTAGTTGCAATTGAGTTGAAGGTTTCTAATCTGTTGAAATCACAACATATTTTCCT GTATCTTTATCTTGTTTTATTTTTATTTTTGTTAGTCAGCGCATTGGATTGCGGTGCATAGAGCTTTAATGGCTATAAAA GACGTGGATGGGATGCTTTCTTCCTTAGATCCTGAGTACTATGATATCCTAATGAAGTAAGTGGTAGAATATCCTGTTTA AATTCATTTTTACATGTCACTTTTAACTTGTATAGCTTCTCATTGTTTGGAATGCACATTTTCTTGGATAATGGTATCAA TTTCAGGTTTACAGTTTGTGATTATTGTAGTTTGGTTTCCCAGCATTCCACATGTAGAAACCTAGGCACAAGTTTTTTTA AGTCTGCCTTTGCTTTGATAATATGTGTGATGTTATTGAGACTTTAATTGGATGGAACAAATTAAGCATCACAAATCACA ATGGGCTTATTAAAATGCAAAATATGTGTCTTGCTTTTGCCTCATCATGTAGTGGAGGAAACAGGTATGACATATATGAT GGCTTTAATCTTAGACTCTCTGGCTTGATATGTCCTGTACTGGAATAACTAAGGCTTGAAATTGGGTTAAGGAACAATAA AAAATATAAATTCCTTGGTGGTATAGTTTTTCCAGAAATTGAATGGTAACTTATTAGCAAACTCTTACATAGATTTGAGT AGCACTAACGGATGTTTATATAGAGTGGGAATTTGATGGTTTATTAAATTAGGAGGGAAAGTACTGTATTTTAATCTTCC CTGCTGTAACAATCCTGTATTTAACCTTTTTCTGGTTCTGGAATACCAGTTCTGTGCTACTGTCCAAAGTTTTGAAAAGT CTTCTTACATTCATAGGCTATTTAGACAAAGGAAATTTCGCGTAATTTTCCCACAGAACATTGTCAGGGATTTTGATGGG CCTCATCCTCCTATGAGAGTGTATCACAGTTGCAGAAGAGAGAAGAGGAGCAAAGGTGAGATAGGAAATGATGGGGGAGG GAATTCTTTTATGCAGATCTTAACAAGCGGGACACATGAGAGCAGCAGCAGAGAAATGGGGATGCGGGAATGAGCCGAGG GGGGATGCGAGTAAGTGGGAAGGGAGGGGGTCGAGGAAGATAGGTAGTAGTTGGTTAATTGTGGGGTGGCTGTTGCCACA GGGCAGAGAAGTTATACTTCTATGATTTTTTTTTCTGTCATTTCCAATTTCTATCTTTTCTTCATGTTTCCCTTGTAAAT ACAGCAACCTTCTCTGAGTTCCTTTCAAATAATTCCAAAGTAAATTCTGTGCCTATAAGTTTGATATCAGAGCTTCTGAT CCTAGGAGCCTCCAGATGGTAACAAAATGAACGGTGGGCAGACTGGAGAAGGTTGAATGTCAACAAGATGAGATGCAAGC TTCCGTTCATGTAGCTATCAGTGGCAAATGGTGGAGATGATGAGGACTTTGACAGACCAAATGGAAACTTGGCTTAGAAG TAGACAAGGTGCAATGTAGGAGGAAGACAACAACAGGGATGGTTGGAACCTAGGCGGAGGACTCGGCAAATGAGAAGAAA AAAGAAGGGTGAATCGGGCGAAGAGGGTTAAGGTGCCATATTTCATGGATAAGGCTGATAAGGCGAAAAGGTGGTGGTGT GCTTAGAAAGTAAGTGTTTGAATTTGTTCTGGTGGTGGGAATCGAGGATGATGATAGTAACTTGGCTGATTTTTCGTCAC CTTCTGCTTGGAAGGTTTTATGTTTCCTCCTTATAATCCTTACAAGAATTTGATGGGTTTGAACTAGAGAGGGAAGGTCA TGGAGTATATAGGGAGCAGTTCGAACTCTTATCTGCTCCGCTACCCTTCCCAGATGAAGAACTCATGAAGGAAGTGTTCA TGAATGGACTCAAGGAGGAAATCAAGGCGGAGGTTTGGACTTTGGATGACTGGTGCAGGGAGGAGACTTGAATGCCTTGA TGATGTTAGCACAAAAGGTAGAAGATTGTAATCAGACACTGGGATGTCAACTTGAGAGTTCAACGGAGGGGACTGTGTCC AACTTCAACAAACCAGCCCTTACTGGTAGTTGGACAGGACCCCATGAGTGCAGCCTCAGGACTTATGGTGGAAGAGTCGA GCTAACCACTTTAAAGGTAACCAATTAGCCATGTCAGGGTAATGCCAAAAGCACTAATAGAAGGTCTGCATGGTTTAAAT GAAAAACTGAAGAAGAAAGGATTGTCGTGCAGTGAAAGGATTGTCGTGCAGTGCGCTATAGCACCGCAGCGGCTTCTAGA GGCTCCTGATTATTGCATAGTGTTGCAATTTTGTGTAGCTGTCGTTGTGGCACTATTTGGCCGCTGGGGCTAATGCCTTG AAATGTTATTGTTAGGGAATTTTTCGGGGAGCATCTATTTTTTTTATTACAAAATATACTACAAAGGGTATGGTTTGAAA CGGAGGATAAGGAAGAAAACTGTGATAGTAGTGAAAGTGATAAAGAGGAAGACTCGGATCTAGAAGAGGATGATTGATGA TTCCTACTTAGGAAACTTTTATTTAAATTTTCATGTTTTTAGGCAGTTTAGTTTAAGCTTTAGAGGCTTAACCTAGCCAG GAACTTCCACTTTTCCTAACAGAAGATTTGGAGTTGCAGGTGAACCCAAAGGCCGTGTTTGCAGTGAGGAAATTCTGAAA TGGGGATTTGGAGGTCCTTACAAAGTGGGCTTACTTGCCTAATGAAGACAGCCCTTTGGAAGACTTTGATAAATTCAAAC AGTTTTTCCAGAATTCTACAGGACAAGGTGCAGCACCGGGGGGTGTTAATGGGCCCTTTCTTGGCCTTCTATTAGAGTGT ATCACAGAAGAGAGAAGAGGAGCAAAGGTAGTATAGGAAATGAAGTGGGAGGGTATTCTGTTATTCTTGATCCTATCAAG CGGGACATGTGGAAGCATGGGAGAGCAATTGGGGGTGTGGGGAGTGCTGGAATCAATGGTGGGGTACATGAATATGAGGG AAGTGATGTGTGGAGGAAGGTAGGCAATTAGTTGTGTAATTGTGGGGTGACTTCTGCCACAGGATACAGAATTTTCTTTG ATTTCATTTCCAGTTTCTATGTTTTCTGCATATTCCCTTGTTATTGCAACAACTTTCTGTGAGGTTCTATAAAATTATTC CTCAGTAAATTCAGTTCCTATCAGATATTACTATGTTATTATATATATATATATATATATATATATATTCAGTAATTGTG ATAGAATTACGAGTCCAATTGATGCGTTTTTCAGTGAGAAAGTTCAAGAAGATTGTTAATTTTCAAGTCAATTTATAACC TGCCTATCAGGAAACTGCCATGTGAGAATTTTTACTTACAAATAGTATTTCAAGAATTTTCCTGGTTTCTGTTGGTGAAT TCTAAAATTACCATTAGCAATGCTAATTGCTTGGTTGCCTGCTAGAATGCTACCTAGCCTACCACTTTCTTGTCCCTGTC CCTTCTGTCCTCTATTCCTATCATCACTTACCTCCATTTCTTTAATCAAACATCAGTGTCTCTTCCCTCTGGCCCCCTTA TTAAATGACGTCAAATTAGACCGTTTCAAACTCTTTTTGGCTGGTTGTTCATCGTTATAGCTCATTCTCAGCTGCCAACC TATCCAAGGTATCCAATTTGCAACACCAATTTTTCTAGAATAACACCAATTTTTCTAGAATAGCATACATATGCCCAGCA GAAAGAAATAGACATGTATTAGACATGCTTGAAAATGAGATTAGCATTAGCTACTTTTAAGACTGGAGTGGACATATTTT AGTCCAGAGACCTCTATATAATGTTGAACGTGATGAACCAGTGGGAAGTGACTAGGTTCTTGTCCCACTGCCTACTCTTG GTCAGTCTTAGAACTTAGATAATGAAGTGTTGTAAATAGTTTGGAGTTACTATAAGATTTTAATTTGGTATGTTCACTCT TTCTATTATTACTATGAAATGTATATAAGGGAAAACAATTTCATTTAATTATGTGATGGTGTTAATATGTTGTTTTGTTT TTTTCATTTTAAACCTTGCTAAAATATATCTCTGAAGCTGAGATTTGTTTGAACAAAATTTCAAAATGTATATACAAATT AGAACTCTGCAAATGATGACTCTCTAATTTATTTGATATAGTTGCTTTCTCTTTATTTTTAGTTGTAAGAATTGGATTTT TAAGAAACTTAAATACTGACACTAAATGAGTTTTTTTAATAATATTATGATTATTAGGTAATTAATTATATTGAATGGAT GACTTTTTCACTGCCAATTTTATCCTAAGAGGTTTCTATTTGTCATAGGTACCTGTATAGAGGCTTATCTACTGGAGATC GTCCAACATGCGACCAATGTCTTAGGATTCATGAAAAATTGACAGAGAAAGCTGGACTAGGTTGCATTCTACGTTTCTTG ACTGATACTGTAAATACAGTATGA
CDS sequence (LotjaGi3g1v0065300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGAGCTGAAGGATTCGTGGAAGCCGATAATGCAGAGGCCATTATCGCCAGAATCGAACACAAATCGCGCAAGAT CGAAAGCTTACTCAAACAGTATAAACCCGTTGAAGCCCTTAAAACTGCACTTGAAGGCACGTATGCTATGACTAGTGATG AGCGTTGCAAGTCAGCGCATTGGATTGCGGTGCATAGAGCTTTAATGGCTATAAAAGACGTGGATGGGATGCTTTCTTCC TTAGATCCTGAGTACTATGATATCCTAATGAAGTACCTGTATAGAGGCTTATCTACTGGAGATCGTCCAACATGCGACCA ATGTCTTAGGATTCATGAAAAATTGACAGAGAAAGCTGGACTAGGTTGCATTCTACGTTTCTTGACTGATACTGTAAATA CAGTATGA
Protein sequence (LotjaGi3g1v0065300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGAEGFVEADNAEAIIARIEHKSRKIESLLKQYKPVEALKTALEGTYAMTSDERCKSAHWIAVHRALMAIKDVDGMLSS LDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRFLTDTVNTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 133 | 131 | 2.9E-28 | ||
| SUPERFAMILY | 8 | 131 | 124 | 6.15E-37 | ||
| PANTHER | 9 | 133 | 125 | 2.8E-48 | – | |
| PANTHER | 9 | 133 | 125 | 2.8E-48 | ||
| Pfam | 14 | 131 | 118 | 2.7E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Arp2/3 protein complex | A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments. | ||
| Cellular component | Actin cytoskeleton | The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. | ||
| Biological process | Regulation of actin filament polymerization | Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament. | ||
| Biological process | Arp2/3 complex-mediated actin nucleation | The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins. |
Expression pattern of LotjaGi3g1v0065300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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