Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0065300.2

Overview

Field Value
Gene ID LotjaGi3g1v0065300
Transcript ID LotjaGi3g1v0065300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Actin-related protein 2/3 complex subunit 5; TAIR: AT4G01710.1 ARP2/3 complex 16 kDa subunit (p16-Arc); Swiss-Prot: sp|Q9M117|ARC5A_ARATH Actin-related protein 2/3 complex subunit 5A; TrEMBL-Plants: tr|I3T639|I3T639_LOTJA Actin-related protein 2/3 complex subunit 5; Found in the gene: LotjaGi3g1v0065300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:6901663..6906806) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTGGAGCTGAAGGATTCGTGGAAGCCGATAATGCAGAGGCCATTATCGCCAGAATCGAACACAAATCGCGCAAGAT CGAAAGCTTACTCAAACAGTAACAACACCCTTTTCCTTCTCTATTCAAATTCTATTTTGTTTTAGGATCAAAGTTTCATT CATTGTCTTGTTTGATGCAATTTCAGGTATAAACCCGTTGAAGCCCTTAAAACTGCACTTGAAGGCACGTATGCTATGAC TAGTGATGAGCGTTGCAAGGTTTTCACTTACCCATTTTCTCCATTTTTATTGTTTTTTTATTTTATGAAGAAAATTTCAC ACTAGTATTAATTCAAATTGTTTTAGTTTTTGATATTCAATAGTATATTTCCAACTAGCAAAAAGACTAGTTTTTTTTAG TCTTTTGTTACTTAAGAGTTTTGGTTCAAGTGCAGATTTTGATACCCTTGATTGAAACCACAACATAATTTTCATGAACC TTCTTGCTTTGAATGTATTTTAGAGTTTTGATACTTTAACATTTGTGCTTATATTTGAATTGGGTTTTTAGGGAACAAAA ATTGTGTTTTTCTTTTCAAGTTTTTAAAGCTATTTTCCACTAGCAAGGACTAACCTTTTTTAACCAAAAATTCAAATTAG TTTTTTTCTTAAACATTTTAGAGTTTAGTTGCAATTGAGTTGAAGGTTTCTAATCTGTTGAAATCACAACATATTTTCCT GTATCTTTATCTTGTTTTATTTTTATTTTTGTTAGTCAGCGCATTGGATTGCGGTGCATAGAGCTTTAATGGCTATAAAA GACGTGGATGGGATGCTTTCTTCCTTAGATCCTGAGTACTATGATATCCTAATGAAGTAAGTGGTAGAATATCCTGTTTA AATTCATTTTTACATGTCACTTTTAACTTGTATAGCTTCTCATTGTTTGGAATGCACATTTTCTTGGATAATGGTATCAA TTTCAGGTTTACAGTTTGTGATTATTGTAGTTTGGTTTCCCAGCATTCCACATGTAGAAACCTAGGCACAAGTTTTTTTA AGTCTGCCTTTGCTTTGATAATATGTGTGATGTTATTGAGACTTTAATTGGATGGAACAAATTAAGCATCACAAATCACA ATGGGCTTATTAAAATGCAAAATATGTGTCTTGCTTTTGCCTCATCATGTAGTGGAGGAAACAGGTATGACATATATGAT GGCTTTAATCTTAGACTCTCTGGCTTGATATGTCCTGTACTGGAATAACTAAGGCTTGAAATTGGGTTAAGGAACAATAA AAAATATAAATTCCTTGGTGGTATAGTTTTTCCAGAAATTGAATGGTAACTTATTAGCAAACTCTTACATAGATTTGAGT AGCACTAACGGATGTTTATATAGAGTGGGAATTTGATGGTTTATTAAATTAGGAGGGAAAGTACTGTATTTTAATCTTCC CTGCTGTAACAATCCTGTATTTAACCTTTTTCTGGTTCTGGAATACCAGTTCTGTGCTACTGTCCAAAGTTTTGAAAAGT CTTCTTACATTCATAGGCTATTTAGACAAAGGAAATTTCGCGTAATTTTCCCACAGAACATTGTCAGGGATTTTGATGGG CCTCATCCTCCTATGAGAGTGTATCACAGTTGCAGAAGAGAGAAGAGGAGCAAAGGTGAGATAGGAAATGATGGGGGAGG GAATTCTTTTATGCAGATCTTAACAAGCGGGACACATGAGAGCAGCAGCAGAGAAATGGGGATGCGGGAATGAGCCGAGG GGGGATGCGAGTAAGTGGGAAGGGAGGGGGTCGAGGAAGATAGGTAGTAGTTGGTTAATTGTGGGGTGGCTGTTGCCACA GGGCAGAGAAGTTATACTTCTATGATTTTTTTTTCTGTCATTTCCAATTTCTATCTTTTCTTCATGTTTCCCTTGTAAAT ACAGCAACCTTCTCTGAGTTCCTTTCAAATAATTCCAAAGTAAATTCTGTGCCTATAAGTTTGATATCAGAGCTTCTGAT CCTAGGAGCCTCCAGATGGTAACAAAATGAACGGTGGGCAGACTGGAGAAGGTTGAATGTCAACAAGATGAGATGCAAGC TTCCGTTCATGTAGCTATCAGTGGCAAATGGTGGAGATGATGAGGACTTTGACAGACCAAATGGAAACTTGGCTTAGAAG TAGACAAGGTGCAATGTAGGAGGAAGACAACAACAGGGATGGTTGGAACCTAGGCGGAGGACTCGGCAAATGAGAAGAAA AAAGAAGGGTGAATCGGGCGAAGAGGGTTAAGGTGCCATATTTCATGGATAAGGCTGATAAGGCGAAAAGGTGGTGGTGT GCTTAGAAAGTAAGTGTTTGAATTTGTTCTGGTGGTGGGAATCGAGGATGATGATAGTAACTTGGCTGATTTTTCGTCAC CTTCTGCTTGGAAGGTTTTATGTTTCCTCCTTATAATCCTTACAAGAATTTGATGGGTTTGAACTAGAGAGGGAAGGTCA TGGAGTATATAGGGAGCAGTTCGAACTCTTATCTGCTCCGCTACCCTTCCCAGATGAAGAACTCATGAAGGAAGTGTTCA TGAATGGACTCAAGGAGGAAATCAAGGCGGAGGTTTGGACTTTGGATGACTGGTGCAGGGAGGAGACTTGAATGCCTTGA TGATGTTAGCACAAAAGGTAGAAGATTGTAATCAGACACTGGGATGTCAACTTGAGAGTTCAACGGAGGGGACTGTGTCC AACTTCAACAAACCAGCCCTTACTGGTAGTTGGACAGGACCCCATGAGTGCAGCCTCAGGACTTATGGTGGAAGAGTCGA GCTAACCACTTTAAAGGTAACCAATTAGCCATGTCAGGGTAATGCCAAAAGCACTAATAGAAGGTCTGCATGGTTTAAAT GAAAAACTGAAGAAGAAAGGATTGTCGTGCAGTGAAAGGATTGTCGTGCAGTGCGCTATAGCACCGCAGCGGCTTCTAGA GGCTCCTGATTATTGCATAGTGTTGCAATTTTGTGTAGCTGTCGTTGTGGCACTATTTGGCCGCTGGGGCTAATGCCTTG AAATGTTATTGTTAGGGAATTTTTCGGGGAGCATCTATTTTTTTTATTACAAAATATACTACAAAGGGTATGGTTTGAAA CGGAGGATAAGGAAGAAAACTGTGATAGTAGTGAAAGTGATAAAGAGGAAGACTCGGATCTAGAAGAGGATGATTGATGA TTCCTACTTAGGAAACTTTTATTTAAATTTTCATGTTTTTAGGCAGTTTAGTTTAAGCTTTAGAGGCTTAACCTAGCCAG GAACTTCCACTTTTCCTAACAGAAGATTTGGAGTTGCAGGTGAACCCAAAGGCCGTGTTTGCAGTGAGGAAATTCTGAAA TGGGGATTTGGAGGTCCTTACAAAGTGGGCTTACTTGCCTAATGAAGACAGCCCTTTGGAAGACTTTGATAAATTCAAAC AGTTTTTCCAGAATTCTACAGGACAAGGTGCAGCACCGGGGGGTGTTAATGGGCCCTTTCTTGGCCTTCTATTAGAGTGT ATCACAGAAGAGAGAAGAGGAGCAAAGGTAGTATAGGAAATGAAGTGGGAGGGTATTCTGTTATTCTTGATCCTATCAAG CGGGACATGTGGAAGCATGGGAGAGCAATTGGGGGTGTGGGGAGTGCTGGAATCAATGGTGGGGTACATGAATATGAGGG AAGTGATGTGTGGAGGAAGGTAGGCAATTAGTTGTGTAATTGTGGGGTGACTTCTGCCACAGGATACAGAATTTTCTTTG ATTTCATTTCCAGTTTCTATGTTTTCTGCATATTCCCTTGTTATTGCAACAACTTTCTGTGAGGTTCTATAAAATTATTC CTCAGTAAATTCAGTTCCTATCAGATATTACTATGTTATTATATATATATATATATATATATATATATTCAGTAATTGTG ATAGAATTACGAGTCCAATTGATGCGTTTTTCAGTGAGAAAGTTCAAGAAGATTGTTAATTTTCAAGTCAATTTATAACC TGCCTATCAGGAAACTGCCATGTGAGAATTTTTACTTACAAATAGTATTTCAAGAATTTTCCTGGTTTCTGTTGGTGAAT TCTAAAATTACCATTAGCAATGCTAATTGCTTGGTTGCCTGCTAGAATGCTACCTAGCCTACCACTTTCTTGTCCCTGTC CCTTCTGTCCTCTATTCCTATCATCACTTACCTCCATTTCTTTAATCAAACATCAGTGTCTCTTCCCTCTGGCCCCCTTA TTAAATGACGTCAAATTAGACCGTTTCAAACTCTTTTTGGCTGGTTGTTCATCGTTATAGCTCATTCTCAGCTGCCAACC TATCCAAGGTATCCAATTTGCAACACCAATTTTTCTAGAATAACACCAATTTTTCTAGAATAGCATACATATGCCCAGCA GAAAGAAATAGACATGTATTAGACATGCTTGAAAATGAGATTAGCATTAGCTACTTTTAAGACTGGAGTGGACATATTTT AGTCCAGAGACCTCTATATAATGTTGAACGTGATGAACCAGTGGGAAGTGACTAGGTTCTTGTCCCACTGCCTACTCTTG GTCAGTCTTAGAACTTAGATAATGAAGTGTTGTAAATAGTTTGGAGTTACTATAAGATTTTAATTTGGTATGTTCACTCT TTCTATTATTACTATGAAATGTATATAAGGGAAAACAATTTCATTTAATTATGTGATGGTGTTAATATGTTGTTTTGTTT TTTTCATTTTAAACCTTGCTAAAATATATCTCTGAAGCTGAGATTTGTTTGAACAAAATTTCAAAATGTATATACAAATT AGAACTCTGCAAATGATGACTCTCTAATTTATTTGATATAGTTGCTTTCTCTTTATTTTTAGTTGTAAGAATTGGATTTT TAAGAAACTTAAATACTGACACTAAATGAGTTTTTTTAATAATATTATGATTATTAGGTAATTAATTATATTGAATGGAT GACTTTTTCACTGCCAATTTTATCCTAAGAGGTTTCTATTTGTCATAGGTACCTGTATAGAGGCTTATCTACTGGAGATC GTCCAACATGCGACCAATGTCTTAGGATTCATGAAAAATTGACAGAGAAAGCTGGACTAGGTTGCATTCTACGTTTCTTG ACTGATACTGTAAATACAGTATGA 

CDS sequence (LotjaGi3g1v0065300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGGAGCTGAAGGATTCGTGGAAGCCGATAATGCAGAGGCCATTATCGCCAGAATCGAACACAAATCGCGCAAGAT CGAAAGCTTACTCAAACAGTATAAACCCGTTGAAGCCCTTAAAACTGCACTTGAAGGCACGTATGCTATGACTAGTGATG AGCGTTGCAAGTCAGCGCATTGGATTGCGGTGCATAGAGCTTTAATGGCTATAAAAGACGTGGATGGGATGCTTTCTTCC TTAGATCCTGAGTACTATGATATCCTAATGAAGTACCTGTATAGAGGCTTATCTACTGGAGATCGTCCAACATGCGACCA ATGTCTTAGGATTCATGAAAAATTGACAGAGAAAGCTGGACTAGGTTGCATTCTACGTTTCTTGACTGATACTGTAAATA CAGTATGA 

Protein sequence (LotjaGi3g1v0065300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGAEGFVEADNAEAIIARIEHKSRKIESLLKQYKPVEALKTALEGTYAMTSDERCKSAHWIAVHRALMAIKDVDGMLSS LDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRFLTDTVNTV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 3 133 131 2.9E-28
SUPERFAMILY 8 131 124 6.15E-37
PANTHER 9 133 125 2.8E-48
PANTHER 9 133 125 2.8E-48
Pfam 14 131 118 2.7E-23

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Arp2/3 protein complex A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments.
Cellular component Actin cytoskeleton The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
Biological process Regulation of actin filament polymerization Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament.
Biological process Arp2/3 complex-mediated actin nucleation The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0065300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…