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LotjaGi3g1v0066200.1

Overview

Field Value
Gene ID LotjaGi3g1v0066200
Transcript ID LotjaGi3g1v0066200.1
Lotus japonicus genome version Gifu v1.2
Description RanBP2-type zinc finger protein family; TAIR: AT1G67325.2 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|Q8GZ43|YZR3_ARATH RanBP2-type zinc finger protein At1g67325; TrEMBL-Plants: tr|A0A151SR86|A0A151SR86_CAJCA RanBP2-type zinc finger protein family; Found in the gene: LotjaGi3g1v0066200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:7025428..7030686) extracted from Lotus japonicus Gifu genome v1.2.

TAACCCCTTTAAAATAGCATCAATTTCTTTCTTTCCTGAGTCCAACTCAGTAAGCAAAGCCCGTGGGCCGTGCAAGCCCC TGTTTGCTGGCAAAATCAAATACTGTCAACACCGCGTTCTATACTCTCTCACTCTGCTCTCCAATTCACTCTCTCTCTCT CAATGGCTTCTCCCATGGTGGGTTTTCTTCCATTTTCATCTAATTTTACATCTTGTTTTTTCATTTACTGAACAAAGTTT GATTCTTTTCCCTCTTTTCCTTTCTGGGTATTTCGTGATTTTTCTTACAGGACGGTAATCGAGGTTCATTTGGATCAAAA AGGTCTCGCAATGATGGTAAGTTTCATTTGCTTTTTTGGGTGCTTAACGATTTCGGTAGCAAAGTTGCTAACTTTTTGTG TTTTGTTTTATGGGTGGCAATAGTGTCAAATTTATGTGCTTTATGAATTCTTTCAAATTGGCATGATGGGTAGGTTTTGG GTAGAATGCAGCAGTGTAGAGAGTTGAAGGAGAGTGTTTGAGGTGTTGTCTGTTGTGTGTGTTTTTAGGGTTTATGTTCA GGCTAGTACTTTGACTACTTTCATTTGTGAATAAATCTTGGTATATATGCCAGTTTTCTAAGAACTGTTATTTTCGCGAT GATTTTGCTGATTATTTTGAAGAATTACGGAAGCTCGGTTTTGTAGTAATTGGGGAATCTGGAATTTGGAATTTTATTTT ATTGTTTGTGATGGCTGATGACCTGCTTTGTATTGAAAATGCGAATGATTTTGCAAAGGAGGTTTTCTTGAAAGGTTAAG ATGGCAATGATGTTGCGAACATTTTCAGAAAAAAGGTTTTGAAATGTGTTTAAAACAGTTACTGTTACGGTTATTATTCA CGGGCATCCTAATACTTGTCAAATTACAATTCTAATTTAGTGTGCTTGCTTGATTTTTTAGTTACATTTCTAAGAGGGTA ATTGTTTTTTCATGTAACCAGTGTCACGAAAAGATGGAGACTGGTCTTGCCCTAATTGTGGGAACTTAAACTTCTCATTT AGAACTGTTTGCAATCGGGGACATTGTGGTGCTCCAAGACCACCTATAACTCCAGTAAGTGTTGGTTTGATTTGAATTTA TCATTTTGAAGCATTTCCTTTGTGAATGACCAACTTGATTTTAACCACCTTGGAAATACAAATAGATGGCCTATTTAGAA CATAGCAGAATCATAATAGTAGTATAAAACCTAATCTTGACAAATTATATGCTAACAGAATTAGCTAACTCCACATATAG GTATAAAGCTTGGATGCTGTTGTTATATATTGCCTTTGTTTTTATCTCACCATCGTCTGCTGATGAGTAACCTCACAGCC AATACCTTAAAGTGGACTGTGCCATATACAATTTTTTGTGTTCTTACCACTTTGTATATTGTTCTTGATAAGGATAACAT ATACAGCAGAGTATTTTTCTACATTTTCGAGCGGTTTAATGCATTCTTAGAAGAACTTGAGCATAACTTATCCTTCTTGT ATGGAGTTATTATATTGCATGGTTACCCGAGGATTTTTTCTAGTTAAGATTAATTTAGTGGAACAAAATGAAAAAATAAA AATTAATATTTGTTTTATGCAATATCACTTTTGATTTGGGTGAGAGCTTAACTGATTGTTTTCTACAGCCTGCCCAGGTT ATGAGCCCGTATAACAATGGTCACCCCCAATTCTACTATGGAGGTGTTGTGGCCCCTCCTCCTCTATATGGCGTGTCAAG CAGGTTTGGATCCCCCCTTCCGCATTCTGGAGTACAGTATGACTATGGTCTTTATCCTAGGCCTCGTGTATCATATAGTC CAATACCTCCATTCCTACCTGGAAGTTTTGGAGGTACTCTCCATAACTGTGTCTCTAATTTCTTATAAGCTTTCTTTTAT TTTCCCTCCTTTCTTTGATTTAATATTATCAAAGTTAATCCTCATGCATGCTAAATAAACTGAAGTATAAATGTATAATC TTATGATTACCAAGAAACCGATTGAATTTTAGACAGTTTTCTGATTGTCAAACTTATTATTCCCTGCAATAATGAGTAAT AACTTTCAGGCTCCTGGAAAGACAACTTTTTTTTTTCTCATTTCTTTTTCCCTCATTTGTTTGGGGAAAATGCTAGTACC AATTAACTTCCTCGCAGCAAACTAGCATTACTGCTTCTTATTTCATTCTAAGAATACTTTTGCATCATATTTTTCTGTAA TTTTACCCGTTACATCATGATGTCAGGCATTTCAATGTGTATATTTTGTGCATTTATAACCAAAATCAGGTATTGCTTAT AGTCCGAGGCCTAAAATCAATCCCTATGGATATGGCTTTCAAAGTCCTACATGGGACATGGGATTAGTAACCGATAATTC AGCATCTCGGAAACGTCGTGGAGGTATTTACATTTGATATTCTTTTCATTCATACCCATATTATTTGTTTCTTTGGATTG GATGTACTTATGTTTCTGGTCTTTTGCAATTAGTGGTTCTTACTTATAGGTTAGATTATGGTAGTAATTTTCTTTGTATG CTCTCTCATATGTCATGTTAAATTTCGTGAAAAAGAAGAGAAGAAAATGAAACAGATCTTGAGGTGAGGACACAACATCT TCAAGAGTTCAAAACTAACAAGTAAAAAAGGAAACTAAAACTGCTACAAGGTTGCCCAGTCCTGTGCATATCCTAGATGC CACACACCCATAATACACCTTGGAAGAACACCAGGGTGTTGCTAATATTAAAACCTATCTCTTTGAATTTGAGGAGAATA ACACACCCTCAAAGATGTGAGCGTTCTACTCCAGCCAAATGTGCACACTGCAACAAATTTTTTCCTATTTCTATTGCCAA GTTCTTTAAACTAAACCATCAGCTGCTACAGAGTATGACTTACATATAAAAAAAACCCTTTGAAGCTATGCCTTTAGAAG AAGGGGTCAATATGCCCATTTAATGTAGCAAGGTATCCATACTGCCGGTAGCCTTGAGACTTGATAAAGCTACATCGACC AGAATCCTGAAAGTGAAACTTACTAGTTTTTTGGTCCTAACCAAGGTATCCCCACTGCCGGTAGCCTTGAGACTAATCCG TCACTCCACAATTAGCGCATTAAGCGGTAGGGGGCTGACCAATGAGTTTTTTCCATTCACAAAAGTTAGGAATCGAACCC CCGACTACTTGTATAGCTTACTTGTATTTCATTACAACCAACTAGCCTTTATTCAATATACTTGTTATCTGTTTTAGTGT TGACCTTATGGCCAATATTGGAATTACATAATATTGAGGCTCAAATTTCCATTAATTATAACAATCCCTTCATGCCCTTC GGCAGGCCTGGGGGACAAAAGAAGTCAAAATGTTTTTACATTTATACAGAGCTTTGCATTACCGTTACTTAAGTATCTAC CTCCCTTGGTAAAAAAAAAACTCACACTTCTTTGGATTGTCTATGCAGGGCCTGACGGTTTATCTGAAGGGGACTGGATC TGCCCAAAGTGTGACAATGTTAACTTTGCCTTTAGAACCAATTGCAACATGAAACACTGTGGAGCTCCCAAACCTGTAAG TGTTTTCATATGTTTGAGTGCTGTAATGATCACCAGTGAGCGTTATTCTCTATTTCACCTTCATTTCATTATTTTTATAG TCCTATAACCTTCAAATACGAAAGCCAACTTCTGATATTTCCTATATCGGATAAAAACTCCATGGAGTGAGGAGCCCCTC CTCACCCTAAACCTTCATTAAGCAGAAACAACAACTTTCTGCACTGATTTCCTTAAACTTCAATTCGATCCTCACCCCCC CCCCCCAAACAACGATGGGAACTGATTTAAAAATGTTTTTTGATACCAATGCTTACTTTGTTAATTTTATCAAGCAAATA TCCTATTTTATAATTTTGTTCTTTTAGTGGGAACTCGAGAGAGATTTGTGAAACTAACATGCAAAAGCTGCGAGGCAAGT GTGGATGAAGAAAAATCTCACCATTTTCATTTTTAACTTGTATGAGTTTGAGATCCCATATGAAAAAGTCGAGTTACATC GCATGTGAACTCGTTCTTTGATAAACTTGGGTTAACTCGCTAAGTCACTACTGAGTTCATAGGTCCAGCAAAAAATGGAA AAAAACCTGAATTGTTCACTAAACGAAGGCATTATCGTTGGTATTCTTTGCAAATCCCTCTATTGTTGGTATTCTTTGCA AATCCCTCTCTCCTCTCTTTTCCTCTTCTCTGCTCTATTTCTTTGCCTGTCGTGCAGAAGAGTGAGCTGCTGCAGTATTA CTAAAATTGTCTACAAATCTCTTGATTTTGAATATTTAGGTTACATAAATTTTTCATAAGTTTCAAATTATGAATTGATA ATTAGAGGCATATAAAATAATTAGATTTTTACTCTTGTTTGATTATCATGACTTAGTTTTCAGCTTTAACTTACATTTAG TCATTTCAGTCAAAGTCGTGCCACTTAGCCGAAGAGGTTCTTATATCATTTGTAATAAATGACCGTTTCACTGTAAAGAT AAAATTTATAGGAAGACTATGAAAATGAATTTTTACTGCAACAACTTAAAAGAACTCCCCTTATTTTGTTAGGATGGCTG TTAATGATTGTTGTTTTTGTAATTATATATTGGTTTCTGTGTTTCACTTTAACAACATATACTGATTGTTGTTTTTTCAT GCTTAATTGAAGGGCAAAAGCCAAGCAAATACAAGTATTCCTGAAGGTAGTTGGACCTGTAAAAAATGTGGGAACCTCAA CTATCCCTTCCGAAGTGTATGCAACAGGAAAGACTGTGGAAGTGAGAAAACAGCCTCTGCAAATTAACATCGCTGCATCG TGTATATACATCTGCTGTCGTGCTGTCTAAGGGAGAAGTTCTGGATTTGGAATAGGGAACTAGATGCACTCAAGGGAAGA GTTCCCATGCGGTTAATTTTGGCCTTATTGTTGATGACAACTTAGTTTATAATGGTATTCTATTTGAAAAAAATACTGAG AGTTAAATTAAATGGGATCATACGACATTTGGATTTTCATGCCAATCACTGTTAGGTTGTTTTGTTGAATTCATTCCATG ACATCTTGCAGTTATTCTTTTCAAAGTTTTGTCATTGATTCCCTTAGTGCTGTCCTGCAAAAGCTATCTGAATTCACATA CCTTGATATTTCTTTGGACTGATTTTTCAATTAAAATGAGATATCACTCAAGAATCAAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0066200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCTCCCATGGACGGTAATCGAGGTTCATTTGGATCAAAAAGGTCTCGCAATGATGTGTCACGAAAAGATGGAGA CTGGTCTTGCCCTAATTGTGGGAACTTAAACTTCTCATTTAGAACTGTTTGCAATCGGGGACATTGTGGTGCTCCAAGAC CACCTATAACTCCACCTGCCCAGGTTATGAGCCCGTATAACAATGGTCACCCCCAATTCTACTATGGAGGTGTTGTGGCC CCTCCTCCTCTATATGGCGTGTCAAGCAGGTTTGGATCCCCCCTTCCGCATTCTGGAGTACAGTATGACTATGGTCTTTA TCCTAGGCCTCGTGTATCATATAGTCCAATACCTCCATTCCTACCTGGAAGTTTTGGAGGTATTGCTTATAGTCCGAGGC CTAAAATCAATCCCTATGGATATGGCTTTCAAAGTCCTACATGGGACATGGGATTAGTAACCGATAATTCAGCATCTCGG AAACGTCGTGGAGGGCCTGACGGTTTATCTGAAGGGGACTGGATCTGCCCAAAGTGTGACAATGTTAACTTTGCCTTTAG AACCAATTGCAACATGAAACACTGTGGAGCTCCCAAACCTGGCAAAAGCCAAGCAAATACAAGTATTCCTGAAGGTAGTT GGACCTGTAAAAAATGTGGGAACCTCAACTATCCCTTCCGAAGTGTATGCAACAGGAAAGACTGTGGAAGTGAGAAAACA GCCTCTGCAAATTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0066200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASPMDGNRGSFGSKRSRNDVSRKDGDWSCPNCGNLNFSFRTVCNRGHCGAPRPPITPPAQVMSPYNNGHPQFYYGGVVA PPPLYGVSSRFGSPLPHSGVQYDYGLYPRPRVSYSPIPPFLPGSFGGIAYSPRPKINPYGYGFQSPTWDMGLVTDNSASR KRRGGPDGLSEGDWICPKCDNVNFAFRTNCNMKHCGAPKPGKSQANTSIPEGSWTCKKCGNLNYPFRSVCNRKDCGSEKT ASAN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 - –
PANTHER
PTHR23111:SF69
6 243 238 5.1E-91 –
PANTHER
PTHR23111
6 243 238 5.1E-91 –
Gene3D
G3DSA:4.10.1060.10
11 56 46 1.6E-14 –
SUPERFAMILY
SSF90209
16 54 39 7.59E-9
IPR036443
Pfam
PF00641
24 55 32 6.6E-7
IPR001876
SMART
SM00547
26 52 27 4.3E-5
IPR001876
Gene3D
G3DSA:4.10.1060.10
157 202 46 3.6E-14 –
SUPERFAMILY
SSF90209
164 202 39 1.94E-9
IPR036443
Pfam
PF00641
170 201 32 8.5E-8
IPR001876
SMART
SM00547
172 198 27 1.6E-4
IPR001876
SUPERFAMILY
SSF90209
203 240 38 9.22E-7
IPR036443
Gene3D
G3DSA:4.10.1060.10
203 243 41 6.4E-11 –
Pfam
PF00641
210 232 23 1.0E-4
IPR001876
SMART
SM00547
212 238 27 0.0039
IPR001876

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0066200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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