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LotjaGi3g1v0068600.1

Overview

Field Value
Gene ID LotjaGi3g1v0068600
Transcript ID LotjaGi3g1v0068600.1
Lotus japonicus genome version Gifu v1.2
Description WRKY family transcription factor; TAIR: AT2G44745.1 WRKY family transcription factor; Swiss-Prot: sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12; TrEMBL-Plants: tr|K7L159|K7L159_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0068600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:7485556..7490946) extracted from Lotus japonicus Gifu genome v1.2.

TATGACAACGCACGTGTAACTAAGAGAGAGAAATTAAAGAGTGTGTGTCCACGACTTCATTAGAGTCTTAAGAAGCCAGG AACGAATAATTTCCACAAAACATTCCCTTCACAATGTAATTGACCAAACTATATATTCATCACAAACCACATGCCCCATC TTTCTGAATCACCCTTTTTTTGTATTCTTTAAGGTCACATGGCCTAGAACTCTTGTTCAATCCACCGTGGGAAGATCGAG CTAGCTAACAACAAGAAAAGAAGAAGTTTAAAACCTAAAGCAAAGTGATTCCAAATCCAAATTTGGTTTATCATTCATAA AAAAGGATCACATGGAAGGGGAAAGAGATCATGTTCCCAATTTTGAGCTTCAAGTTTCATTCACAAACACTCCTCAACCC ATAACCGAAATGGGTTTTGTTGATCATTTTGAAGAAAACCAGGTTCTTAGCTTCTTGGCTCCCTCTGCACAATCCCAATC CTCTCAACCTCTAACTGGCGGCGGCAGCAACGACGCATCCACCACCGCGGCAGCCTCAACTCTTGGCTTCAGCCATGACG ACCTTGTCAACAGAACTTCTTGGAATAGTAACGAGCAGGTGGTTTAATTTATTTTGATATAGCTTAACATGTATGCTAAA GATCAATTAACTAAAGTTATAGACTATGATCTTCAACCTTATAATTGATTAATATGAGTTCTATTTCTTTAATTTGCACT AATTTTTTTTGGTACAGTGTCCATTTCAAGTTTTAGGGTATTCTTTTCATCTCTATCCTTCAAAACAATTTGCTAATTAA TTATATGGATTGTACCATGAATTAGTTTCAGGTGAGAACTATTGATCCGAAGGCTGTCAGTGATGAAAATTGCACTGGAA ATACTAGTGATGGGAACAACACATGGTATATTCTCCTTCCAACTGCAATTTCAATATTGTCCTTCTCTCTCTCTTTCTTT CTCTTGCATGCAGGTAAATTAATACTTATTTAGATACCCAAGAAGATTATTCTTTAGGCTTCTGCAAACAAAACTGAAGG TTCCCTAGCCATTTATGTGGAAGGACAGATTCTTTTTTGCTCTCTTGGGTTATGAGAAACAAAAGTCTTGACAATACTCA TTGATATATACTCATATGAGTCATGTCCACTAGTTCCATCACAGATTTCATATATTCTCTCAAATAGATCATCTTTCACC TTATATTAATTTTTTTTGTACTTATGGCTCAATAATCGTGTTTTGAAGGCTAAGAAATAGCTGTTTAATTGATAATTAGG AGTTTGATCAGGTGTAATAACCACTTTGAAGTTATTGATGAAATTATGATATTATGGCAGGTGGAGGAGTGGAGGGTCAG AGAAGAGCAAGGTGAAAGTGAGGAGGAAGCTGAGAGAGCCAAGGTTTTGTTTCCAAACAAGAAGTGATGTGGATGTGCTT GATGATGGTTACAAATGGAGGAAATATGGTCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGGTAATCCTTCATCCAGCT TCATATTTTCTGGGTTTTTTTTAAACTCACTGTGGTCACTCAATAAATGTCATTTGATTCAGATTAGACAGTTCATATTT GCTTATATATATATGAACTGTCTAATCTTTAATCAAACGACTTGTATTTATGATTGCAGTGCAGTCAATAGCAGTGAATC CAAATTCACAATTTCGCCGGAGTATAGTAGAATATATCCTTATATATAAGCTGGGAACATAAGTCTCATTCCTGCTAACT ACTGCTAATCATAGGAATAGCTTAAGGAAATAAAAACCAAAAAGAATAATTAAAAACGTATCTGTCAAATGCAAATGTAA AATCTGTAATTGAGTACAGTGGCTACATCATAGGCATTATACCCGGAGAAATTAAGGTAATATGTCTTTTTAAGAAAAGA ACCAGTTGTCGCTGGTGTGCAACTGAATGAATATTCTTCACATCACAGGTGAATTGAACCAGGCATTATTTATCATAGAT TTTTCTTAAACCAAAATTGAAATCACTAGAGGGAGAGAGAGATCTAGAGAGAGAGGGAGAGAATCTCCAGCTAAAACTGA AGGAATAATGTCAAGATTGATGGTACACACTGAGCTTGAGGTTATCTCTTTAGACAAAAATAATGATTAATTGTAGAAAA AAAAGGAAATGATATATAGGTCAGAATTTAGTGGATAATTATTAGAGTCTTGACTATTGAGCATACACTAGAGGGTACCC TCCCATCCTTCGTCCTTTCTTCCCAAAACACCCAACTTCTTCCACCTATCAATTCATCACTTAAAATAAAGGTTTCACAT GCAGCTAAAGCTTTTCATTGGATATAACATTTTCCTCAGGTTTTCTAAACTATATATTTTTAAAAATTATATTGTTTCTA TTTTAATCTACAACTTCGTTCAAAATCTGTTTATCCTCATTAGAATCTATTTCATGAAGGAGTGACACCTTAAGACATTC CTTTGTATAACTTTGCATATATTAGATGGATAGATTAGATTGGTATTTGTATATATAGATACATACATTTTTCGAAAAGA CCATTTGTCAAAGACACATGCATTGTTACAGAATTCATTTTTCGAAAATAGAGTAATCTTTTTACTTGACACTCCAAACA TTAGAGCTAGTCCAACAAAGAGTTTGTGACAAAATTAGTCACTAATTAACGGGGGTTGCATGTCTAGTTATTTAGTTATA ACTTAAGGGATTAATAAGATCATTCTTTTTTTTAAAGCTGAATGAAGAAAGCTTCACGAGAACAAGCCTTTTATGAAGAG GGAAATACTAGGAAACTCAAGACAAACAAAGTTCCCCCAACTATGATGATCATACTATGAGAATTAAAACTTTTCTAGAA AAAACTCATTGAGATAAAAACATAGTGAAGGAAAAAGAGTACGTACAAACGCTCTCAATTTGATTGTTTTGAGTTTCCTA GTGTTCCCCTCTTTGAGAGGCTTGTTCTCATGAAGCTTTCTTCATTTAATAATATGTAAAAATAAAAAAAAGTAAAATGT AGCGTCTAAATATATGAATAGATAAGGTTAAGGCTTTTTTAAAAGTCTATTTAGTTAAAAATGTCAGGATTGGGCTACTA AAAAATTCTTACAAGCTTAACAAGCCGACCTATTTAAATAAATATATGATTATTTTTAAAAAATTATTAGATTTTTATTA TAATATCTTAAAACTCTATACTTGTTGAACTATTTATATGTTTGAATATGAGACTATATATTGATTTGACTATATAATGA TTTAATTATATAAACCTCTTTAAAAAATGACTACTAACTTGGATCATATAATCACATTATTGTATTTTAACTCATTAGTT TATAAGTTTGTTGACATGCATGTTTACAAGTAAATTAACTTTCCGAATTGAATGTATTACGATGAAATAGACATTTAAGT AGACTATCAAGCCAGACCAGACTTCCAAATAGATCAGACTCAAACCTAAAAAAACTTTTAACAGACTACAAGCGAGACTC AGACCTTAAATATTTTAATCAGGTTAGGCCTATTTAAACAAAGTCTAAGCCTGCTTCGGTACTTCCAGTCCTAGAAGGGT GTATAAAGGTGGATGTGCATTAATTCCTCTCCTATTAGTTGTGAAAAAATTCAGTGTCTATCAACACACCAAGTCCATCT CAGGCAAAACCATACTAGATGAGCTGCTTTCAACATAAAACAGATGAAAATGAAGTGAAAGTTGAAATTCTTTTATCAAT TTGTCGCACCCTAATGTAATTTTTAGTTGGTTCCCTTGATGGATTGAAGCATACTGTTTTGCGTATGATTTAGACTATGA AACATGCTCAATAAAACGAATGCAGTAGTATGATGAAAACCAAAGTTACTTAGACAAAAGGGAACTAATAATTAGAGAAA GAAAAACATATATGTGTCGGTAACTAACAGAGTGTTTATACCCAACACATAAATTATGTGAGTTAATATTGTTGCGTGCA TGGAAGAAAGTTTTATACCTTTATTGGAGGCAGTCCATGAACCAATGCAATGTGGTTTAAGTGGTATTTCAATTATCATA AACCTAAGAAAGTGTTGTTAAATTTGGTTCAGCTGGAGTCCATCATTATAAAAATTGTACTTAAAGATATGTACTGAGAA GTGGGATTAGGCAGATGGAAAAGTTATTGGAATGATAACACCAGGAGTAAATATATTTAGGAACTTGGGAAAATGGATCT TGTCATATATGAAATTTTACTCATACTTAAATTTTCAATAGAGAGAAAAAAAATCGGCAATTTTTTTTTAAAACTTGTGA ATGATACTATAATATACCACGTGTTTATCTAGGTGGATGGTAGTATACTAGACTACCCGTCAGGGGTCTGCGGCTGGTTC TATCAAGGTCTGACCTGTTTATTAAAAATGTTGTTTAGGCATTTAACAAAAGTCTAATTAATTGAAGAGGCTAAGCTCAC ACTATTGAAAAACGTTGTGTTTGACCGATAAGCCTACCAATTTACATAATATTATTTTTATTAATAATATAAATAAATGG AAATACAATTATATGTAGAAAGATCTGTTAGCCCACTGACCAACTAGCATGCACGCGACTAATTATTAGCCATTTGGCCA ACTGATCTCTTAATTAAGATCACATTTTCTGTTTAGCAGGCTTCTAAACAAACTAGTAGGCCAATCCAAACAGTTTAAAA AGGCAGATTAATTAAACCTTAAAATTTGACTTATGACATAACACAAGTCAGACTTAGGAGACCACCAAATTATAATGAAT GTCAGACTTGACCGCGCAAAGCTTGGTCTAGCATACTTTGACATCCCTCCTTGTTTACATCCTTGGGTCTTCAAATAAAG TTGTCATTTTTCACTTAATTTCTGTATGATTCGCATCTAATTATCTAAATTTGGAATATTTGCAGAAGTTATTACCGTTG CACCCATAGCAATTGCAGGGTGAAAAAAAGAGTTGAACGTCTCTCAGAAGATTGTCGTATGGTGATAACAACGTATGAAG GTAGACACAATCACTCTCCTTGCGACGAATCAAATTCATCTGAACATGAATGTTTTACCTCTTTTTAAACAATATGACGT CGTTTCAAACAGGAATATGTACTAATATTAAAATACTCGTGGGAGTGTGGTTGATTTTTAGTTTTTTACTTGTTACTAAA TTAAATTTCGATATCATCTATATATTGTTAATATTTAAATGCATGTAAATTTCTGACTCATATGGCAGCGAGGTTGCGTT CCCCTCTCTTTCGTCGATTAAGTGTTGGATGGGGAATGCATCAGTCAGTTATGTCCCTGAACCTCCTAACTTCCCTGCCA GGTGGTACATTTTCTCAATTTAAGTATACCC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0068600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGGGAAAGAGATCATGTTCCCAATTTTGAGCTTCAAGTTTCATTCACAAACACTCCTCAACCCATAACCGAAAT GGGTTTTGTTGATCATTTTGAAGAAAACCAGGTTCTTAGCTTCTTGGCTCCCTCTGCACAATCCCAATCCTCTCAACCTC TAACTGGCGGCGGCAGCAACGACGCATCCACCACCGCGGCAGCCTCAACTCTTGGCTTCAGCCATGACGACCTTGTCAAC AGAACTTCTTGGAATAGTAACGAGCAGTTTCAGGTGAGAACTATTGATCCGAAGGCTGTCAGTGATGAAAATTGCACTGG AAATACTAGTGATGGGAACAACACATGGTGGAGGAGTGGAGGGTCAGAGAAGAGCAAGGTGAAAGTGAGGAGGAAGCTGA GAGAGCCAAGGTTTTGTTTCCAAACAAGAAGTGATGTGGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGTCAG AAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGTTGCACCCATAGCAATTGCAGGGTGAAAAAAAGAGTTGA ACGTCTCTCAGAAGATTGTCGTATGGTGATAACAACGTATGAAGGTAGACACAATCACTCTCCTTGCGACGAATCAAATT CATCTGAACATGAATGTTTTACCTCTTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0068600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGERDHVPNFELQVSFTNTPQPITEMGFVDHFEENQVLSFLAPSAQSQSSQPLTGGGSNDASTTAAASTLGFSHDDLVN RTSWNSNEQFQVRTIDPKAVSDENCTGNTSDGNNTWWRSGGSEKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQ KVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDESNSSEHECFTSF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31221:SF137
1 216 216 1.9E-86 –
PANTHER
PTHR31221
1 216 216 1.9E-86 –
MobiDBLite
mobidb-lite
44 65 22 - –
MobiDBLite
mobidb-lite
101 121 21 - –
Gene3D
G3DSA:2.20.25.80
135 209 75 6.0E-32
IPR036576
SUPERFAMILY
SSF118290
141 207 67 1.12E-28
IPR036576
ProSiteProfiles
PS50811
144 206 63 29.608
IPR003657
SMART
SM00774
149 208 60 6.5E-38
IPR003657
Pfam
PF03106
150 206 57 7.8E-25
IPR003657

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0068600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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