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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0071100 |
| Transcript ID | LotjaGi3g1v0071100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | senescence-associated family protein (DUF581); TAIR: AT2G44670.1 senescence-associated family protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3SL94|I3SL94_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0071100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7703773..7706062) extracted from Lotus japonicus Gifu genome v1.2.
CAATTATTAGCCACTTGAAAAACATCACCAAAAAAAAAAACTAACTCCCTGAACCTCTATATAGTTGCCATTCTTCTTTG CTTCTGCTCCCTCCCCTGCTTTCTTCTTCCAACTCCCCTCAACTCATCCATGGCTTCCTATTCTTTCCCTTCTTCATCAC CACCATCCTCAATTGCTTCTCCAAAATCTAGCATGTTTTATTATGCTATAAGTGAAGATTCCTATGAGGAACCTCACTTC CTTCAATCCTGTTTTCTTTGCAGAAAGACTCTTGGCCAAAACAAAGACATCTTTATGTACAGGTCAGCTCAGTTTTCAAT TCAGTCATCTTTATCTACAGTTTATGAGCTATTTAATCATACCCAGATGCTTGATTGGGTTGATGATATTGGCAAAGTTT TGATTCTATTTTTCTTCTATGATGTTGAATTCAGTTTTCAGCAAAAAGTTTCATTAAATTCCATAGATCTAGGATAAAAT ATATAAAATTTTGTATAATAATTCTATAATTAAACTTAAACATGATGGTGATGCTTGGATGAACTGATGAGAAATTGTTA TGATGTTCAAATTTCTGATGAGGATGTTGGAATTGTGATTTTGCAGAGGGAACACACCATTCTGTAGCAAAGAGTGCAGA GAGGAGCAGATAGAGATTGATGAGGCCAAAGAGAAAAGCTGGAAGCGTTCTTCCAAAAGGGGTGTTAGACAATCAGAGAA TAATCAAAATTCCACAACCAATAAGGCTGTGGGAAGAACAGGAACAGTTGCAGTGGCCTGATCAAAATATTCCATGAAAT CATTGAAACTTTGAGTGTTGAAAGAATCCCATTTTTGAAGAAAAAGATGGGATAAGAAATTCCTAAAAGATAAGAGCAAT CAATATCCATGAAGATTCTGATAGACCAGCATGAATCTTTGCTGAACTTTGTAAAGGAATAGTTGGGTCTCCAGAGAAAG AAAAAATCCAACAAAGAATTTTTGACTCTTTTTCTTTTTTACTTTCTGTTTTTGGTGATTTGATTAGAGCCTTTTATTTC TCCTTTTTTTTTTCTACTTCGAATTTTGATAGCCACTCACTCACGTCTCTCAATTGGTAAATTGTGGCATAGATTCATAG AAGTATGACATGATAACACAATTAACTGGAGTCCAGTAAACCAACTTAACAAAGTAAAATGAATCTTGAGACCTAAAACA CACTGAGTCTACAATCACCTGATCTCCTAAGTATTCTGTTTGGAAAAAGTTGAAAATCGATGGAAACTAGGAAAGGTCAT ACGAGGGAGAGAATGGATGAGGAAAATGAAGATTCTGTTAGGTTTATGGTTAGAAATAACTTCAACAAAAAAACTTAAAA TATGTTGTTTTCTTGTTTTGATAGTAAAACAAAAGATCTAACTAATAAAAAGAGTTTGTAGTTTTCCTTAGTTTAGTTTG GGTAACACAAGAAAAGAAGGAAGAAAGTTTTCTTAGGCTTGTCAGGAGAATCAATTCATTCACAAGTTACTATGTAAAGT TAATAACTTCTTACGGCAATCGATTTTGACCTTAGAATAAATTCTAAAAAAAAATATAAACAAACAAAAAAATATTTTCT GAGGCACGTGTTGTGTTGGTTTAAACGCAAATGTAATATCTAGCTCGTATTTTGCTTATAAAAAAAACCTTCTCGTATTT TAAAGTAGTAACATAGAAGATAAAATTTATTGCATTAGTTTAACATGAGAAATAAAATTTTAAACATAGAGTTCAATGGA AATCTAAAAGAAAAAAAGTTGAAATGACAATAAACTCCTTAACCATTGATTTCCTATGGTGATTTGTTTTGAAGGAATAT GAGAAGCATGGTTCTATAGCTTGGTTATTACCTTGGTATGAAGTAGAAAATGGGAAGGAAAGTGGCGGATTGGAGTGTAA AAACTAAAAAGTAGAGTACCCTTGTGTATGTTTGTGTTTCTAAACAAAAATGAATTTCCTTGTCCAAAAAATTATAATAA TATTTAGAATAATAGTAAGAAAAAGTTAGATATTATACTCACTTTCCAGTTTCCACTAGTCCAAACAAGTGAAGAGTAAA AGTTTATTTTCCTTTCCTTAATTTTTTCAATCTACTTTAAAGTTACCTTAATTCTCTTTATTTATTTACTGTCATTTTCT TTCTTCTTATAAATTCGTTTTTATTTTGACTTTTGTAAAAAAGGGCCCTGTAAAAAAAAGTCTTGTTTTTTAATCTATGT AGTGTTGAGGTGACAATGTGGACTGAAACCCACAAACCTTTCCATTGGGC
CDS sequence (LotjaGi3g1v0071100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCTATTCTTTCCCTTCTTCATCACCACCATCCTCAATTGCTTCTCCAAAATCTAGCATGTTTTATTATGCTAT AAGTGAAGATTCCTATGAGGAACCTCACTTCCTTCAATCCTGTTTTCTTTGCAGAAAGACTCTTGGCCAAAACAAAGACA TCTTTATGTACAGAGGGAACACACCATTCTGTAGCAAAGAGTGCAGAGAGGAGCAGATAGAGATTGATGAGGCCAAAGAG AAAAGCTGGAAGCGTTCTTCCAAAAGGGGTGTTAGACAATCAGAGAATAATCAAAATTCCACAACCAATAAGGCTGTGGG AAGAACAGGAACAGTTGCAGTGGCCTGA
Protein sequence (LotjaGi3g1v0071100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASYSFPSSSPPSSIASPKSSMFYYAISEDSYEEPHFLQSCFLCRKTLGQNKDIFMYRGNTPFCSKECREEQIEIDEAKE KSWKRSSKRGVRQSENNQNSTTNKAVGRTGTVAVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 115 | 105 | 2.0E-44 | – | |
| PANTHER | 11 | 115 | 105 | 2.0E-44 | – | |
| Pfam | 30 | 79 | 50 | 1.3E-25 | ||
| ProSiteProfiles | 36 | 80 | 45 | 25.97 | ||
| MobiDBLite | 76 | 115 | 40 | - | – | |
| MobiDBLite | 76 | 91 | 16 | - | – | |
| MobiDBLite | 92 | 108 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0071100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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