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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0072000 |
| Transcript ID | LotjaGi3g1v0072000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 10 kDa chaperonin; TAIR: AT3G60210.1 GroES-like family protein; Swiss-Prot: sp|Q9M1C2|CH101_ARATH 10 kDa chaperonin 1, chloroplastic; TrEMBL-Plants: tr|I3SAR1|I3SAR1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0072000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7829588..7834065) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCTCACATCTCCTCTTTGTTTTTTAGCAGCTGTGGCCTGTGGATAAACCTAGAACCCCAATCCATTCTCCATCACCT CGACCTTGCTGGTTTCTTGCTCTCATCTCTCATCAATGGCTTCCACATTCGTCACCCTACCAACTCCCTTCCTTCACAAA ACCAGTACCAGTGTCCCCTCAACCTCTTTCTCCAACAAGAGACTCCCATGTATCTTCAACTCACCATTTTCTTCACTTGT CTTCACCAATTTCCTCATGTAACGCAATTTACTAACTGTTTTTCATCTGGGTCTTATGCAGTTTTGAAGAGGAACTCTTT GAAGGTTAATGCAGTTGCCACGAAATGGGAACCCGCTAAGGTTATTATTGTTTTTTTCAGTGTGTGGATGTTGATGTTGA AGGCTCAATTATGTTTTGAATTTTGATGATTTTGCTGCAGGTTGTGCCCCAGGCTGATAGAGTTCTTATTCGTTTGGAGG AGCTAGCACAAGTATGCTCTGAACTTATCCAAAAGTCAAATTTGTGTTTTTGTTTAACTTTGGATGTTGTTTATTCTTAG TCTTCAGGAGCTATTAGGATTAGTTTCCAGCACTTAATTTTTCATTCATTTGGTGTTTAGAGTCAATGAATTGCTAGCTT GTATTCAATTATTCAAATTATTATGGTCCTTATCTTAGTGCAAGGTTTAGTGTTGGACTCTTTTGTGTGCCTTCTTTGTT TATCTTGCAGTTCGATTTAGCTTTTGGAAACTCTTTGGCTTTGTTTCGGAGTTTTTGAGGGAAGGGAGGGTAAACAAACC ATCCCCGTTTTTGGAAGTTTAAAATTCCTCAAAAAACTCGAATTTGGGGGAACTTCACAAAATAACTAAAGGAGGGTATT GGTGGGATTTTGGAGGGTTTTAGAAAATTCGCAAAACCCTTTCTTCGTTTTAATAAACTTTCAAACAAGGGGAGGGCTTC TTATAAGCCTTCCCTCGCCCTTCCCTCCAAAATCCAACTTGTAAACAAGCCTTTGAGATCGAACCAGACATGAATTTTTA AGTGCTTGGTGTGCCATTGTATTACAACAACAAAAATAAAATAAAGGCTTTATCCCTCAGGTGGTGTGCCAAATGCCAAT GTATTGCTAGTAGAAAATGCCTTTATGTGTGTTCTAGGCTCATAAAAATAAAACATAATCTGAGATTTCTTCACTCAGTG TCCTCAGCTTGGTTTTCTTTTGTGTCAGTAAAAATAATACAACTTTGATATATTCACACCCCAACTTTCTCTTCCATCTA ATTTCCATCCATTTTTTCTTCCTATCTCTCTCTTCTTTTCTCATCACATATGTCATATCTGTCCCTTCTCTTCCTTCTAT TCCTATCACTCTCTAATGGGCGTTGGTGTATTGAGTGTGAGCAAACAATTTTCCGAAATAATAACACCCATATTCACCCC TTAGTGAGATGATTGCTATTTAAATGCACCATTCTTAATTGCTCCAATCACACATGCATAATAATAGCATGATAACTAAA TTATGTATTAAGAAGGTATATACTATTTGTTATGAAACTTCTTTGAGATATACAGATCAGCTGCCGATGCTGAATATTAA ATCTAATTAGTTGGTGGTTTCATCTGTCGTAATATGCTTAGTTTGATATCATTTAGGTTACTGGTTTACTAAAGTTTGTT ACAAGGTCATGCAATTGAAAATTTCAAAAGCGGAAAGTACATTTACCTTGTTGTGTAGTTAATCTTTGAATATTTTTGTA TGCAGAAAACAACTGGTGGAATTTTGTTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGGGAAGTAAGTATC CATGAATGACTTTGATGCTTTAGGTCTGAAGACTTGCTATTCTCTTTAACGATTTTCTTGTTGAGTTTTTTATTTGAATC ATTTTGTTTCATATTTGTTTCAGGTCCTAACTGTTGGTGCTGAGGCTGGAGAAGTAAAGGCTGGGGCAAAGGTATGTTGT TTAATTACTATGGAAGAGCCCGGCCAACTTTCTCGAGATTGATAAATGCCTTGTATAGGTGTCTGAGATTCTCAAAGGGC TTTAAAATCTACCAATACAAGGAATCCAAAATTAAGACTCAAGTAATTCTAAACTTGAAAAGGAAATAAACCTAAAGTCT AACTTTGTATATAAGATACCCATGATCCAAATATGTGGCCATGAACTTTGGAGTTATTGATATTTAATTAATTAATCCCT AAATTCCAATCACAAACCCTAATTCCCATTATACAATTACTTCACAAATTAATGTTATCCAGAACCAACTCTCCCAAAAG CTCAAGGTCTTGCGTGAAGCTCATGGATGATTTTATATCTAACATTGCCTCTCACTCAAGAACTCTTCGGGGTTGAAGGT TGGTAGTGCAAAAGGCCCACCTAACTCTTGACTATTTGATGATTTTGAGGTCTTGATACCACCTTCAAGATAAGCAATGG AAGTTTATGAATTGCTGGAGGAGTGAAAACCTCTACAGTTGAATTTATATACATTAGCTATAATACATTTTCTAATTACA AGATACAAAATATGAAACATAAAATCACTACAGAAGAACTTATCTTAATATGTCAACATACATGCATTTCACAAATAGTT GATATTTCCAGAAAATGTGGCAAAAATCAGCTCCTCATACTGAGATTGGAGGATAGTTATTTTATTATTGGTTCAGTGAT TATGGTATTTTGTTGGACTGAGTGATAGAATTATATGAGCTCATGCAAGAAGTGGGCCTTGTGAGTTGTGATACCAAGAT TAGATATTCCGGTTCCAAAATTCAATAAAACACTTCAAATTATTTCTAAGAATGATACACTTCTCATAATGCATTCCTTA AGAATGATACACTTCAAATCTTTGTTTAATTTGCATGTCTGTAGTGGGGTAGCTTAGACTTTATTCAATTCATGCATTGC TTCGGTTTAAATCAAACAAGGGTGAAAAACTAGTGGTGTTTTGAATTTGAGGTTGCAGGAATTCATTCCAAATGTTAACT ATAATCGTTTTCTTTTGCAGGTACTATTCACCGACGTGAATGCTTATGAGGTAAGACATTAAAATGAAATTTGCCAAACC ATTTTTATTTTGTCTTGGTTACATTTCAAGCTTGTTTTGATCTCATAAGTTTCTCTTGTCGGGGAAATGTTTTACAACTT CATGTTGAATTACTAAAACTTCGATTGTCACTATTTTGTTGTCCTAATAGTGCATTGGTACGAATTGTGAAATGGATGAA TCATGCAGTTTCAAATACTGCATGATGAGCAATGTGGTGGATGTTTTTTATCACCAGAAAAATATAAATTTTGACACGAC TTTCTTGACAAAAATAAATTGTTAGCATTCTAATGCAATTATTAATCAACTGCTTTAGTCAGGTGGTAATCAACTGCTTG TGTTGACATTAATAAGATTGTATTGATCTATTTACTTTTCAGGTGGATTTGGGGACTGATGCAAAGCACTGCTTCTGTAA AGCAAGTGACTTATTGGCCGTGGTTGAGTAGGTTTTGGTCACTGTTGAGAGGAAGAGCCGCCTTTTTTTTTTGACAATAT TCATGGCAAATGTATTGGTAGTAGAATGAACCATTTTCAATAATTGGTGTTAAAATTTTCTCTTCCAATGTTATAATAGC ACACTGCATCCTTGGCGATTTCCTTTTGCCAATTCTCCACTCCATTCCATGCTATTCTTTTCCCATGTTGTAAGGCTAAA TATTAGTTTGTAATTTTACTTGCTCAAAAGTTTTTCCTTCAGATATCCATATTGCACGGTGAATGTGATTGGATGAGTAA CCACTTTCAAGGAGCTTAATACGTAATATACCGATGGTGTAAATGAGTTTCACACCGGTAATATAAAATAATATGATTGA ACATCTGTGTAAAATTACTCACACTGATAATACTTATTGATTAAAATCACACAGCAGGGGGGAATTCGATAAATTTTAAG AACTACAAGACATGGTTCATTTGTAATATAATACATAATATTAGAATCAAATGTAAATTTCAAATACGATCTGTCACAGT ATATACTAATCAATGAAGATTCAATTTCACACTTATCAAATTCTCTGATTCTCCTTCTTTTTTACCTGTTGCTGCCTTCT ACTATGATGGTACCAGTGCTACAATATGGGCTCTGTTATCAAGCTTCTATGACGGTGAGAAACAACGATGGATGTCCTAT ACAAAATTAAAATGGAGGTTTGCAGAATCAATACAAAATTGAAATGGAGGTTTGCAGAATCAAGACCCAACACAAAATCT TGGAAGTCCACATCATATTCATCCTGGAGAAAATGATTCTTGGGTTATGGCGAATCTATCCTTTCGTGCAAAATCTACCA TCTTGGCCTATATCATTGCGCAAGATTATGATCTCCGAGAACAAATTTGATCCAATTTTCAGTTCTTGGAAGCAATGC
CDS sequence (LotjaGi3g1v0072000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCACATTCGTCACCCTACCAACTCCCTTCCTTCACAAAACCAGTACCAGTGTCCCCTCAACCTCTTTCTCCAA CAAGAGACTCCCATTTTTGAAGAGGAACTCTTTGAAGGTTAATGCAGTTGCCACGAAATGGGAACCCGCTAAGGTTGTGC CCCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTAGCACAAAAAACAACTGGTGGAATTTTGTTGCCCAAGTCAGCT GTTAAATTTGAGCGATATCTTGTGGGGGAAGTCCTAACTGTTGGTGCTGAGGCTGGAGAAGTAAAGGCTGGGGCAAAGGT ACTATTCACCGACGTGAATGCTTATGAGGTGGATTTGGGGACTGATGCAAAGCACTGCTTCTGTAAAGCAAGTGACTTAT TGGCCGTGGTTGAGTAG
Protein sequence (LotjaGi3g1v0072000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTFVTLPTPFLHKTSTSVPSTSFSNKRLPFLKRNSLKVNAVATKWEPAKVVPQADRVLIRLEELAQKTTGGILLPKSA VKFERYLVGEVLTVGAEAGEVKAGAKVLFTDVNAYEVDLGTDAKHCFCKASDLLAVVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 138 | 138 | 9.7E-53 | – | |
| PANTHER | 1 | 138 | 138 | 9.7E-53 | ||
| Gene3D | 49 | 138 | 90 | 1.8E-12 | ||
| SUPERFAMILY | 51 | 138 | 88 | 7.4E-16 | ||
| CDD | 51 | 137 | 87 | 2.4002E-19 | ||
| SMART | 51 | 137 | 87 | 3.9E-16 | ||
| Pfam | 51 | 137 | 87 | 1.2E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. |
Expression pattern of LotjaGi3g1v0072000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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