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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0076300 |
| Transcript ID | LotjaGi3g1v0076300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Stem-specific protein TSJT1; TAIR: AT4G27450.1 aluminum induced protein with YGL and LRDR motifs; Swiss-Prot: sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1; TrEMBL-Plants: tr|A0A151SR83|A0A151SR83_CAJCA Stem-specific protein TSJT1; Found in the gene: LotjaGi3g1v0076300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8373473..8376385) extracted from Lotus japonicus Gifu genome v1.2.
GGAATGGAAAGGACCCAAAGACTAAAAGATTTTAATTTGAGATATGACGACCGGTGATGTGATAATAAATTAAATAATAC AAGCAAAGAAGAAAATGTTGGTACGTGAGGGAAAAGAAAATGGTCTGAACTTTGAAGTTGTATATATAACCATACTTCCA ATATTTAACTTCAATAGCTAGACATACATCTATAGTTATTTCCTTTTCTTGAGAAGACTGATTCAGAATCAAAATGTTGG CCATTTTCCACAAAGCTTTTGCTCATCCACCGGAAGAGCTGAACAGTCCTGCATCTCACAATAATGGCTCCAACAAGCCA AAGCCTCCACAGGAAACTCTCAACCAATTCATTTCCAATCATCTTCATAACTCTTGCACCATGAGCTTTGGCCATGCCGC TGTTCTGGCCTATGTTCGCCCTGATCACCCTTCCTCTCTTCATCAAAGGTAATTAATTTTATTTAATATTTTCCTGCTCA TGATTTTATATGATCTATGAAGAAAATTCAATTTTTGTTTTTGTTTTTGCCTGCTCATCATGATTGTTTTGTAGGTTGTT TTGTGGGGTTGATGACATATACTGCATCTTCTTGGGGAGCTTGAACAATCTGTCTGTGCTCAATAAGCAATATGGTTTGA CAAAGTGTACTGATGAGGCCATGTTTGTGATTGAAGCTTATAGGACTCTCCGTGACCGTGGTCCATACCCTGCAGATCAA GTTGTCAAGGATCTTGATGGAAGCTTTGCCTTTGTTGTCTATGACAGCAAAGTTGGCACTGTCTTTGCAGCACTGGTAGG CTAATAGCATGTTTAGATCAACTTATTTTTATTAATCAATTTTGCCATTTTGGCATTCAGAACTCATTTCCAAACATGTT CGGTGTTTTAAAAAAAGGTGTTTGTTGTGATACCTTAAGCCAGATTAAGGCGTGGTACCCAGAATGAAATAAATTAATAG AAAAATAAGGCAATTTGAACTGAAAAGAAAATGATGGATGAAGATTTGCAAGTTTCAACATAGGTGAGGCATGGAGAAAG AAGATCCTGGCAAGAAAGGATCTTAAATGATCTCTCAAAGTTGAAAGTTAAACTTAAAACCCTAATTTTTCAAATCGTGC ATTGAACAGTATAAACAAACTTAAATACAATATGTTATTAGTTCATTGAGTCATTGAACTTAAATTCTTAAAAATTGCAA CAATAAATCTTCCATTTTTTTTTAAGAAAATAACAAAATTATAACTTAAAGTACTATACGAGATACCATACCCGAAAAAA AATATGGGTACCACATAATTCACCTTTAAAAAACTATTCTTCAACACAACTTGGTTTCTTTAAAGATGTTGATCTTGTTT TGCAGGGTTCTGATGGTGGAGTGAAATTGTATTGGGGAATTGCAGCTGATGGATCTGTGGTGATCTCTGATGATCTAAAA GTCATAAAAGAGGGATGTGCCAAATCCTTTGCTCCCTTTCCAACAGGTAAAGTTTGAACCACCTTGGTCCATTATCTATA AAAGTCTTGATTCATGTACATTTTAATAATAACAACACTCAATATACACTATTTTTTTCTCATTTTCTTTCAGTCACATC ACATACATACATATGACATTTGTTATTTTTCTCTCTTCTGTTCCTATATTTAAGTGTATATAAAATAAAGTGATACACGA ATCTTCATTGTATATATCTTGAAAATTAACTAGTATGAGTCCGTGACATGTGGTGTTTTGATGAATGCAGGGTGTATTTT TCACAGTGAAGGAGGTCTGGTGAGCTTTGAGCATCCAATGCACAAGTTGAAGGCAATGCCAAGGATAGACAGTGAAGGGG CCATGTGTGGGGCCAACTTCAAAGTTGATAAGTATGCAAGAGTTAACAGCATTCCTCGAGTGGGAAGTCAATCCAATTGG ATGGAGTGGGACCAGCATTAGCTTTAAAATGTAAATAAAAACAAAGCAAAGCATGGTCTGGTTCATGTACAATAAAAATG AATGTCATCCTTGACCCTTTCCTAGATTCCCTACCTTCTTCTAGCTGTTTTATTTTTAGCCTACTTGTGTTTTTTTCCTG TTTCCTTCTGAGTAATACAGTATGCTGAAGTGTTTTTCCACACATGGTGTCATTTTAATTGCTGGCTGGTTTATTAGTGA CTGATAGACATTCTGAATTTAAGAGAAGTTAAAAGGAAGAAATATCTTAGAGAGACCAAAACCCGATATGGACTATATGG ATTATTTTATAGGGGAAGACATATTTAAACTAATTTTTATCATTATTGTGTCAATTGTAAGTTATCTTAAATTTCTTAAG TTAAAATTTTATTTATATCTCATTTTAGGATGAAGAGATAGACACAGTCACACAAAGTTATAATTGACGCTGTCAATTCC CTTGAAGGTATCCTCCAGAGTAAATGATAAATTTGGTTCCTAAAAGAAGCACTTGCTGACAAGTTGATCCTTGGATGATC AAAATAGCTCTCGTAGTCCATGAAAGTAGTATATATCAATCAAATTAGTCACTAACATTTTAAAACTTAAGAACCATTAT CGGAGAGAGTGAGTTGGCACCTTAAGTGTCACTTAGGCAATTTTTTAACCGTCAATTTAGTACCTTAATTTTTTAGGTAA ACCAATTTAGTACCTTAGTTGAAAAGTCAATATGATCTTTTTAATTTTTCTATCGCTTTGGTTCCTGCTTCGTCTCTCCT TCTCCCACCTCCTCTCTCCTTCTCCCCCTCTTCACCGCCACTTTTCTCCCACCTCTCTCTTCCTCCCACCTCCCTCCTCC ACCATTCCACCATCCACCCCACCACCATGAGCAAGCTCAAAGATATAAATTTGGAAATTTAACCAAAAAGACAAAAACAT TTACGTAATTGATTCACGATAGTTATGTGCAAA
CDS sequence (LotjaGi3g1v0076300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCCATTTTCCACAAAGCTTTTGCTCATCCACCGGAAGAGCTGAACAGTCCTGCATCTCACAATAATGGCTCCAA CAAGCCAAAGCCTCCACAGGAAACTCTCAACCAATTCATTTCCAATCATCTTCATAACTCTTGCACCATGAGCTTTGGCC ATGCCGCTGTTCTGGCCTATGTTCGCCCTGATCACCCTTCCTCTCTTCATCAAAGGTTGTTTTGTGGGGTTGATGACATA TACTGCATCTTCTTGGGGAGCTTGAACAATCTGTCTGTGCTCAATAAGCAATATGGTTTGACAAAGTGTACTGATGAGGC CATGTTTGTGATTGAAGCTTATAGGACTCTCCGTGACCGTGGTCCATACCCTGCAGATCAAGTTGTCAAGGATCTTGATG GAAGCTTTGCCTTTGTTGTCTATGACAGCAAAGTTGGCACTGTCTTTGCAGCACTGGGTTCTGATGGTGGAGTGAAATTG TATTGGGGAATTGCAGCTGATGGATCTGTGGTGATCTCTGATGATCTAAAAGTCATAAAAGAGGGATGTGCCAAATCCTT TGCTCCCTTTCCAACAGGGTGTATTTTTCACAGTGAAGGAGGTCTGGTGAGCTTTGAGCATCCAATGCACAAGTTGAAGG CAATGCCAAGGATAGACAGTGAAGGGGCCATGTGTGGGGCCAACTTCAAAGTTGATAAGTATGCAAGAGTTAACAGCATT CCTCGAGTGGGAAGTCAATCCAATTGGATGGAGTGGGACCAGCATTAG
Protein sequence (LotjaGi3g1v0076300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAIFHKAFAHPPEELNSPASHNNGSNKPKPPQETLNQFISNHLHNSCTMSFGHAAVLAYVRPDHPSSLHQRLFCGVDDI YCIFLGSLNNLSVLNKQYGLTKCTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKVGTVFAALGSDGGVKL YWGIAADGSVVISDDLKVIKEGCAKSFAPFPTGCIFHSEGGLVSFEHPMHKLKAMPRIDSEGAMCGANFKVDKYARVNSI PRVGSQSNWMEWDQH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 253 | 253 | 2.0E-131 | – | |
| PANTHER | 1 | 253 | 253 | 2.0E-131 | – | |
| CDD | 2 | 231 | 230 | 1.30978E-137 | – | |
| Pfam | 2 | 231 | 230 | 1.3E-110 | ||
| SMART | 2 | 231 | 230 | 7.8E-154 | ||
| MobiDBLite | 13 | 35 | 23 | - | – | |
| MobiDBLite | 17 | 35 | 19 | - | – | |
| Gene3D | 40 | 207 | 168 | 3.3E-10 | ||
| SUPERFAMILY | 67 | 198 | 132 | 1.67E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0076300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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