Transcript — View — Lotus Base

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LotjaGi3g1v0077200.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0077200
Transcript ID	LotjaGi3g1v0077200.1
Lotus japonicus genome version	Gifu v1.2
Description	NAC domain protein,; TAIR: AT3G15510.1 NAC domain containing protein 2; Swiss-Prot: sp\|Q9LD44\|NAC56_ARATH NAC transcription factor 56; TrEMBL-Plants: tr\|V7BUF5\|V7BUF5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0077200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:8522488..8524845) extracted from Lotus japonicus Gifu genome v1.2.

GGGGTAACACAAACTACAAACGCATTTCATTCCAACGAAAATAACATGCTCTTCTCTTCCTCCGGAATCCATAACCATAG CCACCACAACCTCCGATCTCAGTGAATTTTAACCATGGAGAGCACCGACTCCTCCACCGGCTCGCAGCAACAGCCGAACC TCCCTCCCGGCTTCCGGTTCCACCCCACCGATGAAGAGCTCGTCGTTCACTACCTCAAGAAAAAAGCAGCTTCTGTTCCT CTCCCTGTCGCCATCATCGCCGAGGTCGATCTCTACAAGTTCGATCCATGGGAGCTTCCAGGTATATATACTTCAATTTC ACATAATTTCCCTTTTTCTCTCTTTTGTTGTTTTTCTAGAAATGATTTTCATTTTCAACAGCTAAGGCAACGTTTGGAGA ACAGGAGTGGTACTTTTTCAGTCCCAGAGACCGGAAGTACCCGAACGGCGCGAGACCTAACCGGGCTGCGACGTCCGGGT ACTGGAAGGCGACTGGGACTGATAAGCCTGTGTTGACCTCTAACGGAACTCAGAAAGTCGGTGTGAAGAAAGCCTTGGTT TTCTACGGCGGGAAGCCGCCGAGAGGGATCAAAACTAACTGGATCATGCATGAGTACAGGCTCGCTGATAACAAGCCGAA TAATAGGCCTCCCGGGTGTGACTTGGGTAACAAGAAAAACTCTCTCAGGGTGAGTGAGTAACAAAGTAGCAGATTCTGTG TTTCTGTTTTAGCTCTTAACTGATTCTGTTTTAGTTTTAACAAATTTTTTGACAATAACAGTTGGATGATTGGGTTCTGT GCCGGATCTATAAGAAGAGCAACACGCACAGATCACCGCTGGAACATGAGCGTGAAGAATCCATGGATGACATGATTGGA GGGGTTCCATCTTCCATCAACGTGGGCCACCACATGAATTCAAGGCTTCATCTTTCAAAAATGTCATCAAGCTACACCAA CAGTGCATTGCTGGAGAATGATCACCACTTGTATGAAGGAATGATGCTGAGTAACGGCGCGATCTGTAGCGCTGCGAATG CGAGTAGCCTCTCAAACTCCAAGGCGGAGCTTTCAAACGCTTCCAAGAGGACCCTCTCGTCGCTGTACTGGAATGAGGAT GATGTGGCTGGGACGTCGTCGTCGAACAAGCGGTTCGATTTGGATGGCAGTGTTGGTGGTGGTGATCATCATGGAAGTGG TATTGTGAGGACAGATCAAGAGAATGGCACTGCTACTTCTATTGCCTCTCTTCTTAATCAGCTTCCTCAAACCCCTTCGT TGCACCAACAAACAATGCTGGGGTCAATACCATATCAAATAACAGGAATGAATTGGTATGGATAGCTCAATTATTGATAT TATTGATGAAGATGGTGATATTATTGATGCACAAGGAGATATTAAAGTAAAGAATCAAGAAGGGAAATCGTCGTGGGTAA CAGCGAGATTTCTTGTAGTGTGATAATACCTTGGATTAGCTCGATCGATCCTGAGAGCAGCTAGATTGTGAAGATTTTAG TGGAGTATTGAGATTTTGCTTGTTAGGAATGGAGGCAAGTTAGAGTTTAATCCATTAGATGGCTTCAAACTTCTTCAGCT GCAGGCAATGACAAGGCATAAGGTGAGGCCATGGATATTTTTAGTTAAACTTTAATATAGCTTTATACATATATATAGAT ATTTGCTTGTTTTATTGGTATATAAATAATAATGTTGGTTCTCTCTTCATGTACAAATAGTCAAAAATGAAGAAAAAATT CAAAAAAAGGAAAAAGAAGAAGAGAGGATCAGTAGTTTATATATATACATTATTGCTTTAGGATACAAGAGAGGACCTTG TATATATAGAACATATACTGTAGAACAAGATCTATTGATGCAAGAATTGAAAAAAAAAAATTAGGGAGTGTGGTTTGTGG ATGTATTATATTATGTGTATTGTTCTCTCAAGAGCTTGATATTGATTTTATCAGTTAATTGCTATAGCTTGAAGAGTTGA AGGTTAAGCTAGCTCAATAGTAATGGGATCTTAAATTGATTAAGTACTCCAGTAGATGGAAACCAATTCTGGTTCATCTT CTGCATGTAATTCATATCTTTTATCATGAAGAATCATCATCTAAATTATCTTTGAACGTGTCAATTGTTAAATAATAACA CATAAAGAGTATGCCATACCAATTTCTTTGTTATGAAATAATTTTCACTGCTTCCTGTACTGATATATATAGGAAGGAAG ATCTACACGTGCAACTTGTAAGGACCTTTTATATTTTGATACACCAATCCAGATTATGAATTTTGTTCCAACTGATCACA TGATCAACTTTGAAAACAATTTTTATTTTCATAACTTG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0077200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAGCACCGACTCCTCCACCGGCTCGCAGCAACAGCCGAACCTCCCTCCCGGCTTCCGGTTCCACCCCACCGATGA AGAGCTCGTCGTTCACTACCTCAAGAAAAAAGCAGCTTCTGTTCCTCTCCCTGTCGCCATCATCGCCGAGGTCGATCTCT ACAAGTTCGATCCATGGGAGCTTCCAGCTAAGGCAACGTTTGGAGAACAGGAGTGGTACTTTTTCAGTCCCAGAGACCGG AAGTACCCGAACGGCGCGAGACCTAACCGGGCTGCGACGTCCGGGTACTGGAAGGCGACTGGGACTGATAAGCCTGTGTT GACCTCTAACGGAACTCAGAAAGTCGGTGTGAAGAAAGCCTTGGTTTTCTACGGCGGGAAGCCGCCGAGAGGGATCAAAA CTAACTGGATCATGCATGAGTACAGGCTCGCTGATAACAAGCCGAATAATAGGCCTCCCGGGTGTGACTTGGGTAACAAG AAAAACTCTCTCAGGTTGGATGATTGGGTTCTGTGCCGGATCTATAAGAAGAGCAACACGCACAGATCACCGCTGGAACA TGAGCGTGAAGAATCCATGGATGACATGATTGGAGGGGTTCCATCTTCCATCAACGTGGGCCACCACATGAATTCAAGGC TTCATCTTTCAAAAATGTCATCAAGCTACACCAACAGTGCATTGCTGGAGAATGATCACCACTTGTATGAAGGAATGATG CTGAGTAACGGCGCGATCTGTAGCGCTGCGAATGCGAGTAGCCTCTCAAACTCCAAGGCGGAGCTTTCAAACGCTTCCAA GAGGACCCTCTCGTCGCTGTACTGGAATGAGGATGATGTGGCTGGGACGTCGTCGTCGAACAAGCGGTTCGATTTGGATG GCAGTGTTGGTGGTGGTGATCATCATGGAAGTGGTATTGTGAGGACAGATCAAGAGAATGGCACTGCTACTTCTATTGCC TCTCTTCTTAATCAGCTTCCTCAAACCCCTTCGTTGCACCAACAAACAATGCTGGGGTCAATACCATATCAAATAACAGG AATGAATTGGTATGGATAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0077200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MESTDSSTGSQQQPNLPPGFRFHPTDEELVVHYLKKKAASVPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDR KYPNGARPNRAATSGYWKATGTDKPVLTSNGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNK KNSLRLDDWVLCRIYKKSNTHRSPLEHEREESMDDMIGGVPSSINVGHHMNSRLHLSKMSSSYTNSALLENDHHLYEGMM LSNGAICSAANASSLSNSKAELSNASKRTLSSLYWNEDDVAGTSSSNKRFDLDGSVGGGDHHGSGIVRTDQENGTATSIA SLLNQLPQTPSLHQQTMLGSIPYQITGMNWYG

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	18	18	-	–
PANTHER	PTHR31719:SF97 View details on PTHR31719:SF97 Search for proteins/transripts with this domain View external data on PTHR31719:SF97	1	342	342	9.4E-133	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	21	21	-	–
PANTHER	PTHR31719 View details on PTHR31719 Search for proteins/transripts with this domain View external data on PTHR31719	1	342	342	9.4E-133	–
SUPERFAMILY	SSF101941 View details on SSF101941 Search for proteins/transripts with this domain View external data on SSF101941	10	177	168	3.14E-65	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51005 View details on PS51005 Search for proteins/transripts with this domain View external data on PS51005	16	177	162	61.925	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02365 View details on PF02365 Search for proteins/transripts with this domain View external data on PF02365	17	143	127	9.5E-40	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.310.150 View details on G3DSA:3.30.310.150 Search for proteins/transripts with this domain View external data on G3DSA:3.30.310.150	25	183	159	2.7E-66	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0077200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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