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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0079800 |
| Transcript ID | LotjaGi3g1v0079800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon Ty2-B Gag-Pol polyprotein; TAIR: AT4G27330.1 sporocyteless (SPL); Swiss-Prot: sp|O81836|SPL_ARATH Protein SPOROCYTELESS; TrEMBL-Plants: tr|A0A0L9UMC9|A0A0L9UMC9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0079800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8837567..8839417) extracted from Lotus japonicus Gifu genome v1.2.
AACACATTCACAGAGAAACACACACTCACTTTCTCTCTCTTATTTCCTCACTCTCCCTATATATATAACTCAATTCTCAG TGCTCAACACTCCACACAAACCCAACGGCAAAGAGCTTACAGCACACACCCATTTCTCTCTTTCATAACCATGTCTTCTT CTGATCATAGCCCCTTGATCCCTGAAAAAATGAAACGTTTATGTTTCGGTGAGGAACAACCCAGAAACACTGAACCTTCA GCTGCTGCAGCTGGAAAGAGAGGGAGAAAGCCTGGTACTTCCAGAACTCCCAAGAACAAGGTTCCACAGAGAGGCATGGG TGTGGAACGGTTGGAGCAAATGAGGGTTCAAGAGTCCTTGCAGCAGGCAGCTGCAGCTGGATTGGTGGTGCTGCCGCCGT CTCAGCCGCAGACGCCGCCAACGCTCGTCCACCACCACCACCATCACAACTCTCCATTGGGTTATGGTGCACCCTCACCA CCACCCCATGTTGCCTATGGTGCCTATGGTTTGGATCACTACCCCAAACCAATGATCCATGCTGGCCACAGCAGCATCAG CACTTTTGGGGTGGTGAGTCATCATCATCAGGGTCCTAATTTCACTACTGAGGGTGTTGCTGTGGCTGCAACTTCTCCTG GGTGGTCTGTGCCTAATCATCATCAGCATCAGCTCAACAGGGTGGTGGGGCCCTTTGGATCTGGAACTCCATTTGGGGTT GGAAGCCCTATGGAGACCTCCAAGGAGCTCTCTTCAATACCAAATCTTCTTCCTGCTGCAAGATCTGAACCCCTTGCTTT TGGCCCGGTATTTTGATCACCACTCCCTTTTCATTTTTCAATGTTTCAATTTCAGTTCATGGCATGGATCATTCATTGAT TGATACTAATTAACAGTATTTGTCCTGGGATTTGATTTTAAGTTGGTACTTCTGTTGATTGATTATAACTTTGAATGTTT TTGGATCATTTGTTTCTTGATGGGCATCTTTGTTTGTGTGTAATTTTGATTTTGTCTTAGGATAATGTTTTCTATGCGGA CACTGCAAGAGGATCAATTGTATGGAGAGGAAGGCCTGATTCCGAGCCATGGATTAGAGTCGCGGAGGACGGAGGTTATT ACCGTGAAGAGGTAGATTTATATATATACATGATGATATCAATTTATTTGTTTCATGATGGTTGGAAAAATGTATCATAT GATTTAATCAGTAGTTAATCTTTAATTTTATTAAAAAAAGTTTGATTGTATTTGGTGTTGGATCATGAATTGATTTGGGT TTAATTTGTGTTTTGTAAGCCTGCGGAATTAATTGCTGTACACCAGAACGGAAGCTCTGAAGTTATGATGGAATATGAGT TTCTCCCAGGAAAATATGGCAGGGACACTAGTCGCAAGGAGCTGCAATTTGCAACAATAGGTTCAGGTTCAGCAGGAGGT GAAGCTGGTTCTTCTTCCATCATCACTACTGTTGCAGCAGACTATGGAGATACTGCTTCTAATGCTCTTGATTTGTCTCT TAAGCTTTATCACTAGATAGAAGAGGGCTGTTCAAAAAAAAAAAACTAGATAGAAGAGGGGTCCCTTTCTGTTTTATTGT TTTCTTAAGTTCAAGTTCAAGCGCACCTTTATTTTCTGCCTATTTCCTTTTGTTGTTAGACTAATACATAGCTGAACAAT TCTATGTATGCCCTCCTTTGGAACATTAAATTCCCCTCTCAGATCCTTCAGAAGATTATGTCATTTAATGTTTGATCTAT CCAATTTGTTTCAATTCTCTTAAATTTTTTGATTCTTAGTTTCATGATCATCCTCTTGATTTATGTTTGGAATGTTGACA TGACTACGTAC
CDS sequence (LotjaGi3g1v0079800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTTCTGATCATAGCCCCTTGATCCCTGAAAAAATGAAACGTTTATGTTTCGGTGAGGAACAACCCAGAAACAC TGAACCTTCAGCTGCTGCAGCTGGAAAGAGAGGGAGAAAGCCTGGTACTTCCAGAACTCCCAAGAACAAGGTTCCACAGA GAGGCATGGGTGTGGAACGGTTGGAGCAAATGAGGGTTCAAGAGTCCTTGCAGCAGGCAGCTGCAGCTGGATTGGTGGTG CTGCCGCCGTCTCAGCCGCAGACGCCGCCAACGCTCGTCCACCACCACCACCATCACAACTCTCCATTGGGTTATGGTGC ACCCTCACCACCACCCCATGTTGCCTATGGTGCCTATGGTTTGGATCACTACCCCAAACCAATGATCCATGCTGGCCACA GCAGCATCAGCACTTTTGGGGTGGTGAGTCATCATCATCAGGGTCCTAATTTCACTACTGAGGGTGTTGCTGTGGCTGCA ACTTCTCCTGGGTGGTCTGTGCCTAATCATCATCAGCATCAGCTCAACAGGGTGGTGGGGCCCTTTGGATCTGGAACTCC ATTTGGGGTTGGAAGCCCTATGGAGACCTCCAAGGAGCTCTCTTCAATACCAAATCTTCTTCCTGCTGCAAGATCTGAAC CCCTTGCTTTTGGCCCGGATAATGTTTTCTATGCGGACACTGCAAGAGGATCAATTGTATGGAGAGGAAGGCCTGATTCC GAGCCATGGATTAGAGTCGCGGAGGACGGAGGTTATTACCGTGAAGAGCCTGCGGAATTAATTGCTGTACACCAGAACGG AAGCTCTGAAGTTATGATGGAATATGAGTTTCTCCCAGGAAAATATGGCAGGGACACTAGTCGCAAGGAGCTGCAATTTG CAACAATAGGTTCAGGTTCAGCAGGAGGTGAAGCTGGTTCTTCTTCCATCATCACTACTGTTGCAGCAGACTATGGAGAT ACTGCTTCTAATGCTCTTGATTTGTCTCTTAAGCTTTATCACTAG
Protein sequence (LotjaGi3g1v0079800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSDHSPLIPEKMKRLCFGEEQPRNTEPSAAAAGKRGRKPGTSRTPKNKVPQRGMGVERLEQMRVQESLQQAAAAGLVV LPPSQPQTPPTLVHHHHHHNSPLGYGAPSPPPHVAYGAYGLDHYPKPMIHAGHSSISTFGVVSHHHQGPNFTTEGVAVAA TSPGWSVPNHHQHQLNRVVGPFGSGTPFGVGSPMETSKELSSIPNLLPAARSEPLAFGPDNVFYADTARGSIVWRGRPDS EPWIRVAEDGGYYREEPAELIAVHQNGSSEVMMEYEFLPGKYGRDTSRKELQFATIGSGSAGGEAGSSSIITTVAADYGD TASNALDLSLKLYH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 56 | 56 | - | – | |
| PANTHER | 34 | 208 | 175 | 6.8E-39 | ||
| PANTHER | 34 | 208 | 175 | 6.8E-39 | ||
| PANTHER | 254 | 332 | 79 | 6.8E-39 | ||
| PANTHER | 254 | 332 | 79 | 6.8E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi3g1v0079800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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