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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0084000 |
| Transcript ID | LotjaGi3g1v0084000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Xyloglucan endotransglucosylase/hydrolase; TAIR: AT4G13090.1 xyloglucan endotransglucosylase/hydrolase 2; Swiss-Prot: sp|Q9SV60|XTH2_ARATH Xyloglucan endotransglucosylase/hydrolase protein 2; TrEMBL-Plants: tr|A0A072TLU4|A0A072TLU4_MEDTR Xyloglucan endotransglucosylase/hydrolase; Found in the gene: LotjaGi3g1v0084000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9470228..9471914) extracted from Lotus japonicus Gifu genome v1.2.
AGGATCTGGTTTTGTATCCAAGATGTTCTACGGCTCAGGATTCTTCCATATGAGGATTAAAGTACCAGGTAGAGATTCTG CTGGAGTTGTCACGGCTTATTATGTGAGTTAATTATGCTCCTTAATTTTCTATTCTAAATGAAAGATTATCTCAAGGATA TATATATATATTATCTCAAGTATGCTCCTATATTATTGACTAATTAACTATTTTGATGCAGTTGACTTCTCGTGGAGATA AGCACGATGAGTTAGACTTTGAATTCTTGGGAAATAGGGAAGGAAAGCCATATACGTTACAGACCAATATATTTATAGAT GGTGAAGGGAATAGAGAACAACAAATTCATCTTTGGTTTGACCCTACAACAAATTTTCACGATTACCAAGTTCTTTGGAA CCAGCATCAAATTGTGTATGATTCATGCCCCTTTTTGAAGTACAATGTGGTTAAAAATATATATTAACGATTAGGAACTA ACTAGTAAACATCAACCAGCTTCCTTTGAAACAAAACAAGTCTCAAATGAAATAGACTAAACTAAACTAAGGACACTATA TTTGTTTATAAAATTTCTCTAGGTCAAATTGTTTTAAGTTTATTAGTCCACACACACCACACCCAAGCACAACATACTTA ATTATCTCATTCTACATGTGCATTTTGGGTCCGCATTTCCATGTCAAAAAAAAGAAGATAATTTTGTTTTTAAAAAAAAA GTTAACTTTTTTATTCCCATCACTTCTTTTATTAGATCATAGCCTTATTCTCATTTAAATGGATGCAAAATATTTTCTCA ACTTTTAGCTATGAAAATGAGATGTAGAGCCGGTAGAGGCACCATGTATTACGAAGTGGTGAAAAATGTTAATTCTCAAC AGGGTTTTGATTCATTTTCCACTTCTTTCATCCTTCATCTCATAATCTTATTTTTGTTATCACACATATCAGCTGCATTT ATCATATTTCTCATTTATCTCTTTTCTTTTTGTGTTTCCCTCCTAGTGTAAGTGTATTTTAACTATGAAAAAAACAATTA TCTTATGAATATGGAACTTGTCTAACATTCACAACCTGTGAAACTTTATCACTTGAATCAACATACTAGAGATACAATCA AAATAGTTCTCCGATTAATCTACCTAAATTTTCATAAAATTTATATTCAACCAAATACTTTGGCATTGCAGATTTTATGT GGACGATATCCCCATTCGGGTATATAAGAACAAACGTATACTTGGATTACGCTACCCATCAAAGCCTATGCAAATTGAAA CAACATTGTGGGATGGGGAAAGTTGGGCAACAGAAGGAGGCCGAATAAAAACCAATTGGAGTTATGCACCGTTCAAAGCA AACTTTCAGGGATTTGATGTCAGTGGCTGTGAAACTCATCAAAGCTTAAATGATCGACATTGTGGTTCAGAGACGTACTG GTGGAACAGCAAAAGGTATTGGCAGTTAAATCCAGCCCAACATAAACAATACGAAAATGTAAAGAAAAATTATATGACAT ATAATTATTGTAACAATAAGCAAAGGTATCCTAAGACTCACTTGGAATGCCAAGATTAGATTTATCAAATACTTTGTATT AAACATGAATACCGCAGAATTCTTGTGTCTTGTATAAGAGAGGTTCTTGATAGAGAAGCATGCATTTGTACGGTAGAAAA TAAAAAT
CDS sequence (LotjaGi3g1v0084000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTACGGCTCAGGATTCTTCCATATGAGGATTAAAGTACCAGGTAGAGATTCTGCTGGAGTTGTCACGGCTTATTA TTTGACTTCTCGTGGAGATAAGCACGATGAGTTAGACTTTGAATTCTTGGGAAATAGGGAAGGAAAGCCATATACGTTAC AGACCAATATATTTATAGATGGTGAAGGGAATAGAGAACAACAAATTCATCTTTGGTTTGACCCTACAACAAATTTTCAC GATTACCAAGTTCTTTGGAACCAGCATCAAATTGTATTTTATGTGGACGATATCCCCATTCGGGTATATAAGAACAAACG TATACTTGGATTACGCTACCCATCAAAGCCTATGCAAATTGAAACAACATTGTGGGATGGGGAAAGTTGGGCAACAGAAG GAGGCCGAATAAAAACCAATTGGAGTTATGCACCGTTCAAAGCAAACTTTCAGGGATTTGATGTCAGTGGCTGTGAAACT CATCAAAGCTTAAATGATCGACATTGTGGTTCAGAGACGTACTGGTGGAACAGCAAAAGGTATTGGCAGTTAAATCCAGC CCAACATAAACAATACGAAAATGTAAAGAAAAATTATATGACATATAATTATTGTAACAATAAGCAAAGGTATCCTAAGA CTCACTTGGAATGCCAAGATTAG
Protein sequence (LotjaGi3g1v0084000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFYGSGFFHMRIKVPGRDSAGVVTAYYLTSRGDKHDELDFEFLGNREGKPYTLQTNIFIDGEGNREQQIHLWFDPTTNFH DYQVLWNQHQIVFYVDDIPIRVYKNKRILGLRYPSKPMQIETTLWDGESWATEGGRIKTNWSYAPFKANFQGFDVSGCET HQSLNDRHCGSETYWWNSKRYWQLNPAQHKQYENVKKNYMTYNYCNNKQRYPKTHLECQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 220 | 220 | 4.3E-80 | – | |
| ProSiteProfiles | 1 | 150 | 150 | 21.814 | ||
| PANTHER | 2 | 218 | 217 | 5.9E-109 | – | |
| PANTHER | 2 | 218 | 217 | 5.9E-109 | – | |
| Pfam | 3 | 142 | 140 | 5.1E-47 | ||
| SUPERFAMILY | 3 | 218 | 216 | 5.43E-64 | ||
| Pfam | 171 | 218 | 48 | 5.3E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Cellular component | Cell wall | The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Cellular glucan metabolic process | The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues, occurring at the level of an individual cell. | ||
| Molecular function | Xyloglucan:xyloglucosyl transferase activity | Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan. | ||
| Cellular component | Apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. |
Expression pattern of LotjaGi3g1v0084000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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