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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0090900 |
| Transcript ID | LotjaGi3g1v0090900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | H+-transporting two-sector ATPase, alpha/beta subunit, central region, related; TAIR: AT4G05095.1 non-LTR retrolelement reverse transcriptase; Swiss-Prot: sp|O14016|UREF_SCHPO Uncharacterized urease accessory protein UreF-like; TrEMBL-Plants: tr|A0A0B2Q7N2|A0A0B2Q7N2_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0090900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:10382029..10383776) extracted from Lotus japonicus Gifu genome v1.2.
CCAAACCGCTGAAGGTCGCCCAGATAAACGGGCTAAAACCAATCCTGCTCCAGAGAATAAAACCTCCAAACAAACTGAGT TGAAGCTCAAAGAAACCTCCGCGACTCCAAAACTGACCCCCACAGGATTCAGAAAGACAAAAATGTGGCAATCACTATGC TACCACTTGTATCCCACCATGTTCACATGGAAGAGTCTTCACACTCTCTGTCAACCACCACATCAAGGTTTGCCCATTTT TCCTGCTGCTCCAGATGCCAGGATCGATTTGCTCGATCCCAACTTCAATGGTCTCAACTTCATGAACCACCACTTCATGA ACCCAAGACGTCTTACTTGAATTTAATCTTGGCAAATGGAGATGGTGAATGCTAGTGGAAAAGGAAAGTCTTTGGTGCCA AATCCTAGAGGCTAAGTATAATGGGGAGGGGAAGGCAATAGATTCCTTTTGGTGGAAGGATCTGATATCTTGATACAACC TGCTGCTATCAAAGAGCAGATTGAGAGCACTCTTCGAGTGAGTGTGAACTCCTAAGAGAGAAGAAGAAGACTTTTCTTAT TATTCCCTACTCAAAGGTTTGACAGTACAATACTTTTATAGGAAGGATTGCACTCAATCATCAAATAGAAAGCACAAATT CAGGAGACTAATTAACATAAGTTCAGGAATTGAAATAGCAAAATGCATAATCAGAGGCTTAAACAACGTTGCTGATACAG TGCTTCTAGAGCTCTTATTCACTAGTAAAGTCTTCCATCCAGGTGGGCTTTCTTGTTGTCCGTTTGCCTCGGCCCAACAT GTTATCTTCAGTTTCCTCTGCTGACTGGGGCTTTGATGGTTCTTCACATGTTGGGCCCGTATCATTTCCCTCCCCTTCGA AACGCACCTTGTCCTCAAGGTGGAAGGATGGAAAAGCTGCAATGAAACTAGGAAAGGGGCGGGTCAAGGGGGTTGGTTTG GGGATGCTATCAGTAGAAGAATTGGGGATCAAAGTGATGTATTGTTCTGGGAAGACGATTGGTGGGAAGTTAGGCATTTG AAGGTTATTTTTCCAAGACTTTTTATTCCATCTGCACAGAATAGGGCCTCTATATCTAATATGGGGAGTAGGGGTGAAGT TAGGTGGTCTTGGAATTTTGAGTGGGTTAGGGAGTTGTTTTAAAGACAGGCTTTGTGGGTGGAGGAACTCAAACGTTTAA TCAGGAGCTTCTCCCCTATAGCGTTGGCTTGGTGGGTCATCCTTAATAAAATTCAATCTAAAGCCGATTTAGCTCGTAGG AACGCTCTTCCGTCTTCTGCTGGGGTGGACTGTGTTATGTGTTATGGGGAGAAGGAAAGTATTCCTCATTTGTTTTTTGG TTGTCATATGGCTTGGGGTGTGTGGGCGAAAATTTTCAGGTGGCTTGGCGTGATTCCAGTGCTGCCTACGGAGACTAGGG GTTATTTTCTACAATTTGGTCATTGTTCGAGTGGTGGGAGCGCTAGTGCAAGGGTGATCTTCATGATTTGGATTGCTCTA ATTGGATCTATTTGGTATTATCAGAACTATGCAATGTTTCGTGATGAAGCAGTGGAGGTAGAGATGATGGAGGAATTGAC TCAGTTCAAATCATGGTTATGGCAAAAAGCTTTTAAGAGGGACAAATAGAAGGAAGAAGACGAGAGGAAGAGAGAAGAAG AAAAGGAGAGGAATAGAGGAATATAGAAGAAGAAAGGAGGAAGAAGACGAAGAAATTTCATAGAGAAA
CDS sequence (LotjaGi3g1v0090900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTTATGGGGAGAAGGAAAGTATTCCTCATTTGTTTTTTGGTTGTCATATGGCTTGGGGTGTGTGGGCGAAAATTTT CAGGTGGCTTGGCGTGATTCCAGTGCTGCCTACGGAGACTAGGGGTTATTTTCTACAATTTGGTCATTGTTCGAGTGGTG GGAGCGCTAGTGCAAGGGTGATCTTCATGATTTGGATTGCTCTAATTGGATCTATTTGGTATTATCAGAACTATGCAATG TTTCGTGATGAAGCAGTGGAGGTAGAGATGATGGAGGAATTGACTCAGTTCAAATCATGGTTATGGCAAAAAGCTTTTAA GAGGGACAAATAG
Protein sequence (LotjaGi3g1v0090900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCYGEKESIPHLFFGCHMAWGVWAKIFRWLGVIPVLPTETRGYFLQFGHCSSGGSASARVIFMIWIALIGSIWYYQNYAM FRDEAVEVEMMEELTQFKSWLWQKAFKRDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 108 | 108 | 1.5E-13 | – | |
| PANTHER | 1 | 108 | 108 | 1.5E-13 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 36 | 25 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 37 | 55 | 19 | - | – | |
| TMHMM | 55 | 74 | 20 | - | – | |
| Phobius | 56 | 75 | 20 | - | – | |
| Phobius | 76 | 110 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0090900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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