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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0098100 |
| Transcript ID | LotjaGi3g1v0098100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein kinase; TAIR: AT4G27290.1 S-locus lectin protein kinase family protein; Swiss-Prot: sp|O81832|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290; TrEMBL-Plants: tr|A0A072TS26|A0A072TS26_MEDTR Serine/threonine-protein kinase; Found in the gene: LotjaGi3g1v0098100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12254698..12255487) extracted from Lotus japonicus Gifu genome v1.2.
CAACAACATCAACAATGAAGAAAGTTTTTTATGGGAGAGCTTTGATCATCCTTGTGATACAGTGTTACCAGGAATGAAGA TTGGATGGGACAGAAAATCTGGAATTAACAGGCTTTTCACTGCTTGGAAAAACTGGGATGACCCTTCTTCAGGGGAATTC ACTGCAGCCATGGTGCTTACCAAGAATCCTGAATCAGTAATTTGGATGGGTTCAGAAGCGTTGTACAGAACTGGGCCATC TTACAGTGGTGTAATTGCATTGATGACTAATCCAGTTTATGATTACCAATTTGTGAACAATGAAGATGAAGTGTACTACT CATACACTCTCAAGAACACTTCTGTGATTTCCATAATTGTTCTGAACCAAACCCTTTCTCTCCGGCAACGCCTCACATGG ATTCCAGAAACCAAAACATGGGCTGTTTACCAATCCTTGCCACAGCACAGTTGTGATGTTTACAATGTTTGCGGCCCGAA TGGAATTTGCAGGATTGATAGATCACCAAGGTGTCAATTTTTAGAAGGATTCGAGCCGAAATCGCCGCAATAATGGAATG CATTGTTGTTCCGGTATGGAACCGCAGACTAAGGCTAACCAATATCGAGAGCAAGCGAGAGTAAACAAAGTGAGTAAAAT GCGTGAAATGATAGGATCCCCACCGCTTGGGCGGTCCTCTTTTATTTATAGCTTGGGTTTTGGTCCGGCTGGACCATGGG TTGCCCGGCCCATTAGTTACATGATACTGATTAACCCATTCGGTCCGCCCATATCAGTCCACAGGCCCAC
CDS sequence (LotjaGi3g1v0098100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATTGGATGGGACAGAAAATCTGGAATTAACAGGCTTTTCACTGCTTGGAAAAACTGGGATGACCCTTCTTCAGG GGAATTCACTGCAGCCATGGTGCTTACCAAGAATCCTGAATCAGTAATTTGGATGGGTTCAGAAGCGTTGTACAGAACTG GGCCATCTTACAGTGGTGTAATTGCATTGATGACTAATCCAGTTTATGATTACCAATTTGTGAACAATGAAGATGAAGTG TACTACTCATACACTCTCAAGAACACTTCTGTGATTTCCATAATTGTTCTGAACCAAACCCTTTCTCTCCGGCAACGCCT CACATGGATTCCAGAAACCAAAACATGGGCTGTTTACCAATCCTTGCCACAGCACAGTTGTGATGTTTACAATGTTTGCG GCCCGAATGGAATTTGCAGGATTGATAGATCACCAAGGTGTCAATTTTTAGAAGGATTCGAGCCGAAATCGCCGCAATAA
Protein sequence (LotjaGi3g1v0098100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIGWDRKSGINRLFTAWKNWDDPSSGEFTAAMVLTKNPESVIWMGSEALYRTGPSYSGVIALMTNPVYDYQFVNNEDEV YYSYTLKNTSVISIIVLNQTLSLRQRLTWIPETKTWAVYQSLPQHSCDVYNVCGPNGICRIDRSPRCQFLEGFEPKSPQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 158 | 158 | 2.3E-40 | – | |
| PANTHER | 1 | 158 | 158 | 2.3E-40 | – | |
| Pfam | 51 | 157 | 107 | 5.8E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Recognition of pollen | The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. |
Expression pattern of LotjaGi3g1v0098100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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