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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0098700 |
| Transcript ID | LotjaGi3g1v0098700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U11/U12 small nuclear ribonucleoprotein 48 kDa protein; TAIR: AT3G04160.1 U11/U12 small nuclear ribonucleoprotein; Swiss-Prot: sp|Q9M8X2|U1148_ARATH U11/U12 small nuclear ribonucleoprotein 48 kDa protein; TrEMBL-Plants: tr|K7LJW1|K7LJW1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0098700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12301031..12307306) extracted from Lotus japonicus Gifu genome v1.2.
CAACACGCTGCCTAGCCACCATTGAATGCTAGACAGTCTTTCGACACAAGAAGCTGTGATACCACGGTGGGCTGCGAAAG GAATAAAACTTCGAGAATCATCACATTGGGCTAAAAAACAAACCATAAGTAGATTGGACACTCCATCTTTACCCAAAGCC TAAGCTTTTGAACACTTTCCGAGTTTTCAAAGTGGGCCTGGCCCAGTACATACAAAAACAAGAACAAGCTTCTTGTAATC CGAATCCAGCAGCAATTTGAGCACAATCTAAAGCTTCCGTTCCCACGTGATTCCACCATCGGCCGATTCTGTTCACGATG GAGCACGGGGAGGGTGAGTATCATTTTTGTCTCCTGTGGGTGAAATAAGAGTTTCCAAGTTACCAAAATTCCTTTTAAAC TGGTGATTATGTATGCTTAAATATCCAATTGCTTTTGCTAGCTCAAATGCAGTGACATTTATACTTGCTTAAATATCCAT TCTAGCTGTTTCTTTATTATTGTCATATCCATTAGGTTTTGTTATGATCTTATATGATCCATTAAGTAAGTTCAATTGAT TTTTCTTTGCAGCAATGATGAACAATAACTTGCAGATGACACTCTCATCCCTCAACAACCTACTTGATGTTTCAAACCAT ATTCTCCCAATAACACCAACCCTAAATACCAATCTCATACAATGCCCTTTCAATCCCCATCACCTTGTCCCGCCTTCCTC CCTCTTCCTACATCATCTCGGCTGCCCTTCCTCGCCGCGCCCTCTTCCGAACCCCAACGACCTCCTCCACACTCTCTCAT ACCCCAAATCACTCCACAACCCCCAATCTCTTCAGCTCTCTTCCTATTTAAACTCTCCTTCGAACCTCTTGTACCGTGAT TGTCCCGGTGTCGTTAGTTTCTCTAACTTAGACACCGTTGCCAGAACCGCAACCTTCGCGCTTCCCGATTTCTTATCCCG CGAATGTGAAGACAGGCATACAGGGAATTCGAATTCTGAGAATGTGTATGTGTCTGCCGTCGTGCCCGTTCTTCCTTCTG AGCATGTTGCCATAGCGCGTGAGCTCGAAACCTGGCACGGTTACCCTACTACTTGCTCCAATGCTGTTCGTCGCGCGATT TCAGGCCTTGAAATTGCGAAGGAGCGTGGGTTAAGCGACTGGTTAATAGTGAATTCGCCTCGATACGGCATTGTAATTGA TACAGCTATGCAGCAGCATATATTTTTGCTGTGCTGTTTGTGCTTCAAGTCAATTTTGAGAGAAGCTTCCGTTTCCAGGG ACAATCTGTTGGATTGCCCCGTTTTGAACCAGGCATTGACTTGGTTAGAATCTCAGGTTTCGATCCTGTACGGTGCCACA AACGGAAAGTGTTTTGTTCTTGATTTTGTGAAAAGATGTATTATGGTTGGTGCATCGGTTCTGTTATTGTTTCCTCTAGG GGACGAGGTTGCATCCCAGATTTCAGATAATGTCATTGGGGGCCTGAAGGATGCTATGTTTGGTGCTCAAAATGAAGAAA GAAGTACAAACTGCATATTGTACAGAAAGATCTTTGTTCCCCAGGTTGTTGCAGCAGTGGCAGCGTTGCATGAGCGATCT CTGCTTGAACAGGAAATTAAGGGGTTGTGGTTTTCTCGGCAGCCAAGTAACTATCACCTGTATGTTCTGTTTATTCTGAA ACTATTTGCTTGTAGCGGAAAATTGTGAATGTTTTTCTTCCAGAATCTTTCTTTCGTGAATGCGGAACTATAAAATATGT ATTGAGTTATGGCTCTGATAATTTTCAATCAAATGATTGTGAATATCATGAGGTTAATCTGATTGTATAGAGTTTTGGTT CACTAGGGTTGCTGAGCATGGTTATTTGTCTGAGAAAGCTAATGAAGAACGGAAAAAGCGTCCGGACTATAGACCTCTGG TTGAACATGATTGGTTTCTTAGGCAGCAACCATCTGGCCAGGTACTTTTAATCTTGTATAACTTTTAGAAGCACAATCTT CCATGTTGTGATTCTTGACATTATGCTATCTGTCTAACTAGATGGGCTTTACTTTTCTCTCTCTAGTTTATAGCACTAAA ATACCTCAGAGAGGACCATTTGGATAGTTAGCAATGCATATATGTTATTCTGAGTACAAAACCAGTTTGCATCAAAGGAC AGTTCAAATCCACATCTTATCGGTTTTTGTGTCCGACACATTCTGCACTTCAATAGCATGGGGCCATTCATTCTAAATTT ATGCCTCAGTTCCTGATAACTTAGGCTTTGAGTTCATGGAGGTGACTATGATATTTACTTTTCTTTTACCTATAATTGTC ATTTTTATCTGCCATGAATTATAGGAAGCGCCAAAAGAAAAGACAAGAGAGGAGTTATTAGCTGAAGAAAGGGATTACAA ACGTCGAAGAATGTCTTATCGTGGCAAGAAGACAAATCAATCACCTTTACATGTTAGTATTACTGAAGTAGTTGTTGAAT CTTTCTACTTCTATTGTTGAATCATAGTAACTTTAACTTCTTAATCTTGATTTATTTTTTCTAATTGCTCCTTATCTCTG TGGAAGCTGAATACTCATAAGCATCTTTTAATTATCATAATGTTTATATTAGTTAGTGCCACTATTGGGTCAGGGGGGAT GGATATTTATTCTTTTCCAGCTCATTTCTCTATTGGACTATTTCGTTATAAATTATTTGAAGGAAAAGTTTGGCTCTTTT ATTTAACTTCATGTTTACTAATTTATATAATTAATTCTAAACTGTTCTTGAAGGTGATGAGGGATCTGATAAATGAATAC ATGGAAGATGTGAAGCAAGCTGCAGGTGTTCAGAGCCCTGTCAAGGTGTCTGAAGACAGTGGGATGTTTCCACCTAAACT TCCTTCTAGCCATGGCGTTCCTAGGGAAGTTAATAATTATAAAGAAGTTAGTCTTGACTCAACTGCAATGACTATCAGTA ACCCGGGGTTTGGTGAGCAGCAGTCACAGACAAAATATACTGACAAAAGCAAAGCTGTAGATGATGCCTTTTCTAGAGAT TATGAACGACGACATTACAGGAACCACTCTTATGGAGGAGCTCAACAAAATGCTGATCGAGGAACATATCATAGGGACCG TGCTTCTTCAAGCCCTGACAGGCAGATAAGTCATAGTCGAGCACATGATCATAGCATTCTTCATAAGAGAAAAGATTACT CGAATAGAAAGAGGTACGATGACTCATCAAGAACCAGGGATAGGCGGGAAAAGGACACACACAGGAATTACATTTCAGAT TCTTCCCTGAATAATGCATTTTCAGATCGTTATGATCCTTCAGAATCTCTTCATGTCCGTGAGGATGATATCAACTCTGA TGCCAAATATATTAAGCCAGATAAATTTTCTGACCAAGAACTTCATTAACAATGTCTTGGCCAGAAATGTGAAGGGACTG CATCTGCAGTTGGTAAGTTTTTCTAGTTACATTTCCAATTTAAAGTTATATTTAAGTTTGAAAGTAAAGTTATACTTATA ATGTATTTTATTTGCATAACTTTGCAGTACTAACATGCCAAGCTTCAGAGATTTTATCAATGTATCCTCCTTTGTATCCT TAACTTTGAAAAGAGTATCTTAGCAAGCATTCCTTGGAAGGATTTGATTCTCTACACTGTTTTTATTTTTATTGTATTCT TTATTTTTCTTCTCAGTATTTAAGCTATAATATGCCAACTATAGCAATTGCAATGAAATATATTCAATCTCTGTATTGTT CTAATTCACTCTGATTGTTTTACTTAAAATATTTCTTGTTATATTTCGAATTAATAATGTTATGTATGGTGACTATGTGC TAGGAGAAATGAACCAGGTTGGATAATTTTCTACTTCAGATTTTGAATAGGTTTATTGTCCATGTTGTTATTAATTTAGT TATGTTCTTTATGTTTCTTCTCAACTGCAATATAATCTATTCACATAACTGTATTTTCTAATTCAATCTATGATTGTTTT ACTTACAATTTTTTTCTTTTGTTATATTTTGAATTAATGTTATGTATGTGGTAGGAGAAATAAAACTGATCTGAGAGCAA TTATATAAGTTCCTATATCTTCTATTGAGGCTTAGATATTAGGGTGAATCAACTTTAGTTATAGGTTCTTATATCCTCTT CCTCCTGCTTCTTCTCCTTTCTCCTTCTTCTACTGTTAATGAACATTCTATCTTGGGTCCCGATAAGCAGTGATTGGATT TGAATTCATTTCAACTTCAAGTATTTTTTGTTTTTCTTAACAACTTCCCTGTTGTGTTCTCTCCTAGCACTTGCAGCTAA ATGTACAACTTAGCTTAGAAATAGGAAGGTTGATCAAGCTTTATCGTTATTTAGTTATTCATGTATTGCAAGAAATATTT ATGAATATTTCAACATTATCTGCCTTTAAAATTCCTTTGACTGGGCTAATTTATTTTCCTTTGATTTTAGACTGGTTGAA ACAATAGAATCTTTCAATATCTATCTGAATTCCCTGTGATCTTACAGTTTGGCTTGTTACAGTTTCTACTTTGTTTAGTA GTGGAGACCAAGCTGTGATGAAGTGACTGCTGTAAAAATGCTATATCAAAGGTTAGATAAGTAAACCCCTGCAGTAATGG TTTGTGTGCCTAGAAATTCAGGGATTAATCATAAAAGAGGAGGGTAGCTGGTTAGGTTTGAGAAAGATAACTATTGGCCT AAGTCCTAATTTATGTGCCAGTTTTGATGTTTGAATCACATAAGTATATAGCTAATATCTTTGTTCTCTGACTGCTTATT CATAACTGCAGATTCAATGCAACCCGGATGACCGCGGAAGACTTGACTCTGTGGGAAACAGTTCAAACCATGTATTTTTT CCCGCAATAGAAGCCACTTCAGCCCTTGCCTTGCATAAGGTCTAAGCTGTCTTATGGCACTGAACAATCTCTTGCCAGTT TCTAGAATATACTTGTTAATTTGGTTTCTTTGTCCTCATTTTTTTGTTGCTATCAAAGAATATTCCAGTTTTTGTAGTCT TATGGCTAATGTTTTAGTGCATATTGCTAGGGTTAGAAGGATAAACTTTAGAAATTCCGCTTCTCAACTGGTAAAAATAG TTTCATCTTTTTCGGTGTCCCAGCATGTTTGTTACATTGTTACTTGACTTCAGTAAAAGCATAAACTAGAAATTTTGCGT CTTAACTGGCAACAATGATTTCATGCTTATCAAAGTGCCAGCTTCAATTTGTTTCCTTGTTACTTCACAATAGTTCAACG GGATTTGGTCTATTAAAAGTTATTATTCACCAAATGGATTTTCGTATTATGAAAAATAGTGATGTTGCAGGCAATCATAT TATGAGTAGTGTTGGATATTATTTTCTAAAGTGAGCTGAGATTCCAGTCAGGGCTGCACTGAGAAAAGTCTAAAAAATTA AGGACTCTAGTTGCATGTTTGTATTTGCTTTATGATATCTAGAATAGATTGTGGCTCCCTCACAAGCTATCAAGAGTTGC TTCTACTTACAACTACTATCAAAATCACTTCTACTTTATCAGAGCTTCCAAACATGCTAGGAATGATTGCCTGCAACATC ATGCTGAACCAGAATCAAGGCTCGAAATAGCAATCCATAAAAAAAGGTGGGAATTTAAAAAAAACTATGTTTTAACACTT TCAGTAGCTATTGGTAATCGTTTATAAAGTATCGGAAATCGATTTGGGAAGGTGGTGGGAGGATTTGAAGGTTTTTGCTT CTGGGCTGCTCAATGATGTTACGGTGGTGGCAGAGGAGGGGGATCTCATGTGAGAAAGTGTGCAGCTAGTTTTGTAATTC ACTAACTTCAGTCTAAACCATTCAATTTTTAAACATTAAATCAACGGTCAATATTGCATTAATTTTCTAGAATGGAGGGC ACAGCAATGTTGAGGAAATTAAAGCTCTAGAAGCTAATGATACATGGACATTAGTACCCCTACCACCTAGTAAGCATTGC ATTGGTTGTTGATGGATTTTCAAGGTGAAATATGTCTAATGGGGAAGAGAAGTGGAAATATACAAAGCCATATTAGTGCC TAAGGTTACATTGAACAAGCAGATATTGATTTTTCAGACACATTCGCACCTGTTGCTAAGTTGTCCACAGTAACAGTTTT ATTGTCTGCTGCTTACTTAGCAACACACCTTTCATCACTTACCATTTGCATTTAAATTCTTTCTTATCCATCCTCAATTG CTCAAAGTATTGTTTATATAGAAGTGGCTGAAGAAG
CDS sequence (LotjaGi3g1v0098700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCACGGGGAGGCAATGATGAACAATAACTTGCAGATGACACTCTCATCCCTCAACAACCTACTTGATGTTTCAAA CCATATTCTCCCAATAACACCAACCCTAAATACCAATCTCATACAATGCCCTTTCAATCCCCATCACCTTGTCCCGCCTT CCTCCCTCTTCCTACATCATCTCGGCTGCCCTTCCTCGCCGCGCCCTCTTCCGAACCCCAACGACCTCCTCCACACTCTC TCATACCCCAAATCACTCCACAACCCCCAATCTCTTCAGCTCTCTTCCTATTTAAACTCTCCTTCGAACCTCTTGTACCG TGATTGTCCCGGTGTCGTTAGTTTCTCTAACTTAGACACCGTTGCCAGAACCGCAACCTTCGCGCTTCCCGATTTCTTAT CCCGCGAATGTGAAGACAGGCATACAGGGAATTCGAATTCTGAGAATGTGTATGTGTCTGCCGTCGTGCCCGTTCTTCCT TCTGAGCATGTTGCCATAGCGCGTGAGCTCGAAACCTGGCACGGTTACCCTACTACTTGCTCCAATGCTGTTCGTCGCGC GATTTCAGGCCTTGAAATTGCGAAGGAGCGTGGGTTAAGCGACTGGTTAATAGTGAATTCGCCTCGATACGGCATTGTAA TTGATACAGCTATGCAGCAGCATATATTTTTGCTGTGCTGTTTGTGCTTCAAGTCAATTTTGAGAGAAGCTTCCGTTTCC AGGGACAATCTGTTGGATTGCCCCGTTTTGAACCAGGCATTGACTTGGTTAGAATCTCAGGTTTCGATCCTGTACGGTGC CACAAACGGAAAGTGTTTTGTTCTTGATTTTGTGAAAAGATGTATTATGGTTGGTGCATCGGTTCTGTTATTGTTTCCTC TAGGGGACGAGGTTGCATCCCAGATTTCAGATAATGTCATTGGGGGCCTGAAGGATGCTATGTTTGGTGCTCAAAATGAA GAAAGAAGTACAAACTGCATATTGTACAGAAAGATCTTTGTTCCCCAGGTTGTTGCAGCAGTGGCAGCGTTGCATGAGCG ATCTCTGCTTGAACAGGAAATTAAGGGGTTGTGGTTTTCTCGGCAGCCAAGTAACTATCACCTGGTTGCTGAGCATGGTT ATTTGTCTGAGAAAGCTAATGAAGAACGGAAAAAGCGTCCGGACTATAGACCTCTGGTTGAACATGATTGGTTTCTTAGG CAGCAACCATCTGGCCAGGAAGCGCCAAAAGAAAAGACAAGAGAGGAGTTATTAGCTGAAGAAAGGGATTACAAACGTCG AAGAATGTCTTATCGTGGCAAGAAGACAAATCAATCACCTTTACATGTGATGAGGGATCTGATAAATGAATACATGGAAG ATGTGAAGCAAGCTGCAGGTGTTCAGAGCCCTGTCAAGGTGTCTGAAGACAGTGGGATGTTTCCACCTAAACTTCCTTCT AGCCATGGCGTTCCTAGGGAAGTTAATAATTATAAAGAAGTTAGTCTTGACTCAACTGCAATGACTATCAGTAACCCGGG GTTTGGTGAGCAGCAGTCACAGACAAAATATACTGACAAAAGCAAAGCTGTAGATGATGCCTTTTCTAGAGATTATGAAC GACGACATTACAGGAACCACTCTTATGGAGGAGCTCAACAAAATGCTGATCGAGGAACATATCATAGGGACCGTGCTTCT TCAAGCCCTGACAGGCAGATAAGTCATAGTCGAGCACATGATCATAGCATTCTTCATAAGAGAAAAGATTACTCGAATAG AAAGAGGTACGATGACTCATCAAGAACCAGGGATAGGCGGGAAAAGGACACACACAGGAATTACATTTCAGATTCTTCCC TGAATAATGCATTTTCAGATCGTTATGATCCTTCAGAATCTCTTCATGTCCGTGAGGATGATATCAACTCTGATGCCAAA TATATTAAGCCAGATAAATTTTCTGACCAAGAACTTCATTAA
Protein sequence (LotjaGi3g1v0098700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHGEAMMNNNLQMTLSSLNNLLDVSNHILPITPTLNTNLIQCPFNPHHLVPPSSLFLHHLGCPSSPRPLPNPNDLLHTL SYPKSLHNPQSLQLSSYLNSPSNLLYRDCPGVVSFSNLDTVARTATFALPDFLSRECEDRHTGNSNSENVYVSAVVPVLP SEHVAIARELETWHGYPTTCSNAVRRAISGLEIAKERGLSDWLIVNSPRYGIVIDTAMQQHIFLLCCLCFKSILREASVS RDNLLDCPVLNQALTWLESQVSILYGATNGKCFVLDFVKRCIMVGASVLLLFPLGDEVASQISDNVIGGLKDAMFGAQNE ERSTNCILYRKIFVPQVVAAVAALHERSLLEQEIKGLWFSRQPSNYHLVAEHGYLSEKANEERKKRPDYRPLVEHDWFLR QQPSGQEAPKEKTREELLAEERDYKRRRMSYRGKKTNQSPLHVMRDLINEYMEDVKQAAGVQSPVKVSEDSGMFPPKLPS SHGVPREVNNYKEVSLDSTAMTISNPGFGEQQSQTKYTDKSKAVDDAFSRDYERRHYRNHSYGGAQQNADRGTYHRDRAS SSPDRQISHSRAHDHSILHKRKDYSNRKRYDDSSRTRDRREKDTHRNYISDSSLNNAFSDRYDPSESLHVREDDINSDAK YIKPDKFSDQELH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 582 | 572 | 6.6E-160 | – | |
| PANTHER | 11 | 582 | 572 | 6.6E-160 | ||
| ProSiteProfiles | 40 | 67 | 28 | 14.745 | ||
| Pfam | 40 | 64 | 25 | 4.7E-7 | ||
| MobiDBLite | 466 | 485 | 20 | - | – | |
| MobiDBLite | 502 | 518 | 17 | - | – | |
| MobiDBLite | 502 | 631 | 130 | - | – | |
| MobiDBLite | 519 | 540 | 22 | - | – | |
| MobiDBLite | 551 | 608 | 58 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0098700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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