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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0099400 |
| Transcript ID | LotjaGi3g1v0099400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prohibitin, putative; TAIR: AT5G40770.1 prohibitin 3; Swiss-Prot: sp|O04331|PHB3_ARATH Prohibitin-3, mitochondrial; TrEMBL-Plants: tr|A0A1J7HVR6|A0A1J7HVR6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0099400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12362521..12364383) extracted from Lotus japonicus Gifu genome v1.2.
ACACTCCATAGTCCATACCACATTAATTATCTCACAAGTTATTGAAGTGAAACTTAAACCACTTCCTCCATTTCCTTAAC CCCTAAACCCCTTCTTTCTCTCCAACTAAATGGGAACCAGCCAAGCACTCACAAGTCGACGGCGTTTCCGCGGCATTCTA GACGAAACCGTCGGCGAAGGAACGCACTTCCTCATCCCATGGGTCCAGAAGCCTTACATCTTCGACATCCGCACTCGTCC CCACACATTCTCCTCCGTCTCCGGCACCAAAGATCTTCAGATGGTGAGTCTCTCCCTCCGTGTCCTCTCCCGCCCTAACA CAAACCGTCTCCCTGTCATTGTCCAGAACCTCGGCCTTGAGTATGATGAGAAAGTGCTGCCTTCTATTGGCAATGAGGTG CTTAAGGCGGTTGTCGCGCAGTTTAATGCTGATCAGCTTCTTACTGATCGGCCACTTGTATCGGCTCTCGTTCGCGATAG CCTTGTTCGGAGAGCTAAGGATTTCAATATCATTCTTGATGATGTCGCGATCACGCACCTCTCTTACGGTACTGAGTTCT CCAGGTAATGGAATTTTCATTGAATGTATTTTGTGTGTGTGTTAAATTGCTCTCGCAATTCCTGATAGACTCACAATGCG GCTCTTAGGAATCGAACTTTGACCTAGTGGTTTAAATAGTCACTTTTTACCACTGCGACCAGCGCTCAGTTGGTTTTTTC ATTGAATGTTATAGAAGGTGTGATCAATTCTTGAATGAGTGAAAAGAGCTTAGGTATATTAACATAATAATAATAAGTAC ATTGAAGTTTATATTAAAGTTATATTAGTATATTACCTATTGTGTGTTTGGATTTCTGTTACATTCTCTAAAATCACTAT CATCCGAATCCATTGTGAGACATGGATTTCTGTTGGAAGTCCAGTTTTGCTAATGGAAATGCGGGTTGGAATGAGTGTAT TATTCCGAATCAATTAAAAGCCTTCACATTGGACTGGTTCAGGTGATTTTGTACTTTGGAGGATATTAGATTTTAATTTG AGAATATAAAATTTAAACAAAAATCTAAAAATGAATAAAATTTTGAGGGGAGAAACCCTTAATCGGGTTGGGTTGGTTTG TTTCATTTTGCTTGACCTGATTAAGATCAGTTTTACTAGTTATTCACTCGAGCTGAACCAATGATCTGATCTGAACAGAT TTTCTTGACTTTGAGACTCGAGTTGAATATTGAGTTTGTGAGTTGGGTTCGGCCAACTTTCACCCCTACTATCGAGTTCT TCGATTGGCCGGTAAAGTTCATATTGAGTGCCTGCTTTAAATACTATGCGGCTCAAGTAGGATTGACTCTTGTTTAAAAA TGAAAGCTTTTCTGGAACTATGTTGAAATTATGATTAGCTGTGCCGAACACTTATGCAGTAATTAGTCATACCGCATTCT GGTCTAACTCATTCTAAAGTCTAAACTAATTAACCGTACTTCTAACTAATTTACTGCATTAACAGATTTGGCATGAATGG ATGTCATGACATTCATCGCGTTGTATTTGTGTCCTAATTCTGTGTATGATCCAATGCTAGGGCTGTTGAGCAGAAGCAGG TAGCGCAGCAGGAGGCCGAGAGGTCCAAGTTTGTTGTCATGAAATCTGAGCAGGAGCGTCGCGCTACCATTATCCGTTCT GAGGGAGAGAGTGATGCTGCAAAGGCAATCTCTGAAGCTACTGCATCTGCTGGTATGGGATTGATTGAGTTGAGGATGAT TGAGGCTGCCAGGGAAGTGGCAGCCACACTGGCAAAGTCTCCTAACGTCTCTTACCTGCCTGGTGGAAAGAACTTTCTCA TGCCTCTTAATCCTTCGCGGTGA
CDS sequence (LotjaGi3g1v0099400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACCAGCCAAGCACTCACAAGTCGACGGCGTTTCCGCGGCATTCTAGACGAAACCGTCGGCGAAGGAACGCACTT CCTCATCCCATGGGTCCAGAAGCCTTACATCTTCGACATCCGCACTCGTCCCCACACATTCTCCTCCGTCTCCGGCACCA AAGATCTTCAGATGGTGAGTCTCTCCCTCCGTGTCCTCTCCCGCCCTAACACAAACCGTCTCCCTGTCATTGTCCAGAAC CTCGGCCTTGAGTATGATGAGAAAGTGCTGCCTTCTATTGGCAATGAGGTGCTTAAGGCGGTTGTCGCGCAGTTTAATGC TGATCAGCTTCTTACTGATCGGCCACTTGTATCGGCTCTCGTTCGCGATAGCCTTGTTCGGAGAGCTAAGGATTTCAATA TCATTCTTGATGATGTCGCGATCACGCACCTCTCTTACGGTACTGAGTTCTCCAGGGCTGTTGAGCAGAAGCAGGTAGCG CAGCAGGAGGCCGAGAGGTCCAAGTTTGTTGTCATGAAATCTGAGCAGGAGCGTCGCGCTACCATTATCCGTTCTGAGGG AGAGAGTGATGCTGCAAAGGCAATCTCTGAAGCTACTGCATCTGCTGGTATGGGATTGATTGAGTTGAGGATGATTGAGG CTGCCAGGGAAGTGGCAGCCACACTGGCAAAGTCTCCTAACGTCTCTTACCTGCCTGGTGGAAAGAACTTTCTCATGCCT CTTAATCCTTCGCGGTGA
Protein sequence (LotjaGi3g1v0099400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTSQALTSRRRFRGILDETVGEGTHFLIPWVQKPYIFDIRTRPHTFSSVSGTKDLQMVSLSLRVLSRPNTNRLPVIVQN LGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTDRPLVSALVRDSLVRRAKDFNIILDDVAITHLSYGTEFSRAVEQKQVA QQEAERSKFVVMKSEQERRATIIRSEGESDAAKAISEATASAGMGLIELRMIEAAREVAATLAKSPNVSYLPGGKNFLMP LNPSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 2 | 158 | 157 | 1.2E-35 | ||
| PANTHER | 11 | 245 | 235 | 2.6E-138 | – | |
| PANTHER | 11 | 245 | 235 | 2.6E-138 | ||
| CDD | 11 | 192 | 182 | 2.12379E-82 | ||
| Pfam | 14 | 173 | 160 | 6.4E-18 | ||
| SUPERFAMILY | 29 | 165 | 137 | 3.66E-16 | ||
| PRINTS | 41 | 57 | 17 | 1.6E-66 | ||
| PRINTS | 59 | 78 | 20 | 1.6E-66 | ||
| PRINTS | 82 | 100 | 19 | 1.6E-66 | ||
| PRINTS | 105 | 121 | 17 | 1.6E-66 | ||
| PRINTS | 128 | 147 | 20 | 1.6E-66 | ||
| PRINTS | 153 | 176 | 24 | 1.6E-66 | ||
| PRINTS | 176 | 192 | 17 | 1.6E-66 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0099400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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