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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0103000 |
| Transcript ID | LotjaGi3g1v0103000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative; TAIR: AT2G34980.1 phosphatidylinositolglycan synthase family protein; Swiss-Prot: sp|O64761|PIGC_ARATH Phosphatidylinositol N-acetylglucosaminyltransferase subunit C; TrEMBL-Plants: tr|A0A1J7HPZ6|A0A1J7HPZ6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12762418..12763332) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATCATAGGTTGGCTGGTGGTAATTCTTCTCCACCTCGACCCAGATGGAGAAAAGTAGCATATGGTGGCATGCAACC TGGATATGATGACAATTATACTGATGAATCTTTCCTTGAAGGAATGGTCATGAATGCCAGTGTTGTAAAAAGGGACATGG TAAAGGTGATGCTGGACTCCGTTTCCATTTCGGAATATTTATGCATTGTGGCTCTTGTTGTCTTGGTCTGGGCTCGCACA CTTACATCAACTCTTGATGAAAATTCCCTTTTGGTTATTGATGTAAGTCTTCTTGTTTCAGGTTTTCTAATCCTCCTTTT CACTCAAGAAATGCTTTCCCTTGGTCTTCTCCTTCATTATATCCTCAATATCTCATTTTTCATAACTGGATTATATGTTT TGGCTCCCATCTATCAAACACTCACAAGGTCCATTAGTTCAGATTCCATCTGGGCTGTAACTCTATCACTTCTCATGCTT CACCTTTTTCTCCATGACTATTCAGAATCCACTGTCAAAGCCCCAGGGGTTAAGAAGAATCCTGCATTGACCAATTGTAT ATCAGTAAATGCTTCTGTAGTTGCGTCAGTTTTCATTGCTTCGCGTCTTCCATCGAGACTACACGTGTTTGCTATCATGT TATTTTCATTGCAGGTTTTCCTTTTTGCTCCACTGGTTACTTACTGTATCAAAAAATATTCCTTCACCTTACACCTATAC TTTTCCTTTAGTTTGATGGCCATGACCTTAAGCTTTGTGTTCATGCTGCATCGCTTGCTTTTTGTGCTGCTGTTAAGTTT GTTGGTTTTTGTCAATGTGGTGTGTCCTTACTGGCTTATAAGGATTCAGGAATACAAGTTTGAGATCAATGGTCCTTGGG ATGAGGCTAAGCTTTGTTTTGATATTACTGACTGA
CDS sequence (LotjaGi3g1v0103000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCATAGGTTGGCTGGTGGTAATTCTTCTCCACCTCGACCCAGATGGAGAAAAGTAGCATATGGTGGCATGCAACC TGGATATGATGACAATTATACTGATGAATCTTTCCTTGAAGGAATGGTCATGAATGCCAGTGTTGTAAAAAGGGACATGG TAAAGGTGATGCTGGACTCCGTTTCCATTTCGGAATATTTATGCATTGTGGCTCTTGTTGTCTTGGTCTGGGCTCGCACA CTTACATCAACTCTTGATGAAAATTCCCTTTTGTCAGATTCCATCTGGGCTGTAACTCTATCACTTCTCATGCTTCACCT TTTTCTCCATGACTATTCAGAATCCACTGTCAAAGCCCCAGGGGTTAAGAAGAATCCTGCATTGACCAATTGTATATCAG TAAATGCTTCTGTAGTTGCGTCAGTTTTCATTGCTTCGCGTCTTCCATCGAGACTACACGTGTTTGCTATCATGTTATTT TCATTGCAGGTTTTCCTTTTTGCTCCACTGGTTACTTACTGTATCAAAAAATATTCCTTCACCTTACACCTATACTTTTC CTTTAGTTTGATGGCCATGACCTTAAGCTTTGTGTTCATGCTGCATCGCTTGCTTTTTGTGCTGCTGTTAAGTTTGTTGG TTTTTGTCAATGTGGTGTGTCCTTACTGGCTTATAAGGATTCAGGAATACAAGTTTGAGATCAATGGTCCTTGGGATGAG GCTAAGCTTTGTTTTGATATTACTGACTGA
Protein sequence (LotjaGi3g1v0103000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHRLAGGNSSPPRPRWRKVAYGGMQPGYDDNYTDESFLEGMVMNASVVKRDMVKVMLDSVSISEYLCIVALVVLVWART LTSTLDENSLLSDSIWAVTLSLLMLHLFLHDYSESTVKAPGVKKNPALTNCISVNASVVASVFIASRLPSRLHVFAIMLF SLQVFLFAPLVTYCIKKYSFTLHLYFSFSLMAMTLSFVFMLHRLLFVLLLSLLVFVNVVCPYWLIRIQEYKFEINGPWDE AKLCFDITD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 55 | 55 | - | – | |
| PIRSF | 6 | 92 | 87 | 9.2E-20 | ||
| PANTHER | 8 | 91 | 84 | 1.2E-85 | – | |
| PANTHER | 8 | 91 | 84 | 1.2E-85 | ||
| Pfam | 17 | 91 | 75 | 1.0E-15 | ||
| Phobius | 56 | 78 | 23 | - | – | |
| TMHMM | 56 | 78 | 23 | - | – | |
| Phobius | 79 | 89 | 11 | - | – | |
| PIRSF | 88 | 249 | 162 | 1.7E-43 | ||
| PANTHER | 89 | 248 | 160 | 1.2E-85 | ||
| Pfam | 89 | 239 | 151 | 3.2E-44 | ||
| PANTHER | 89 | 248 | 160 | 1.2E-85 | – | |
| Phobius | 90 | 109 | 20 | - | – | |
| TMHMM | 90 | 109 | 20 | - | – | |
| Phobius | 110 | 129 | 20 | - | – | |
| Phobius | 130 | 148 | 19 | - | – | |
| Phobius | 149 | 153 | 5 | - | – | |
| TMHMM | 153 | 175 | 23 | - | – | |
| Phobius | 154 | 175 | 22 | - | – | |
| Phobius | 176 | 181 | 6 | - | – | |
| TMHMM | 182 | 201 | 20 | - | – | |
| Phobius | 182 | 199 | 18 | - | – | |
| Phobius | 200 | 204 | 5 | - | – | |
| Phobius | 205 | 225 | 21 | - | – | |
| TMHMM | 206 | 225 | 20 | - | – | |
| Phobius | 226 | 249 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | GPI anchor biosynthetic process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Phosphatidylinositol N-acetylglucosaminyltransferase activity | Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + phosphatidylinositol = UDP + N-acetyl-D-glucosaminylphosphatidylinositol. |
Expression pattern of LotjaGi3g1v0103000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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