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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0103000 |
| Transcript ID | LotjaGi3g1v0103000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative; TAIR: AT2G34980.1 phosphatidylinositolglycan synthase family protein; Swiss-Prot: sp|O64761|PIGC_ARATH Phosphatidylinositol N-acetylglucosaminyltransferase subunit C; TrEMBL-Plants: tr|A0A0L9V910|A0A0L9V910_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12762418..12763332) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATCATAGGTTGGCTGGTGGTAATTCTTCTCCACCTCGACCCAGATGGAGAAAAGTAGCATATGGTGGCATGCAACC TGGATATGATGACAATTATACTGATGAATCTTTCCTTGAAGGAATGGTCATGAATGCCAGTGTTGTAAAAAGGGACATGG TAAAGGTGATGCTGGACTCCGTTTCCATTTCGGAATATTTATGCATTGTGGCTCTTGTTGTCTTGGTCTGGGCTCGCACA CTTACATCAACTCTTGATGAAAATTCCCTTTTGGTTATTGATGTAAGTCTTCTTGTTTCAGGTTTTCTAATCCTCCTTTT CACTCAAGAAATGCTTTCCCTTGGTCTTCTCCTTCATTATATCCTCAATATCTCATTTTTCATAACTGGATTATATGTTT TGGCTCCCATCTATCAAACACTCACAAGGTCCATTAGTTCAGATTCCATCTGGGCTGTAACTCTATCACTTCTCATGCTT CACCTTTTTCTCCATGACTATTCAGAATCCACTGTCAAAGCCCCAGGGGTTAAGAAGAATCCTGCATTGACCAATTGTAT ATCAGTAAATGCTTCTGTAGTTGCGTCAGTTTTCATTGCTTCGCGTCTTCCATCGAGACTACACGTGTTTGCTATCATGT TATTTTCATTGCAGGTTTTCCTTTTTGCTCCACTGGTTACTTACTGTATCAAAAAATATTCCTTCACCTTACACCTATAC TTTTCCTTTAGTTTGATGGCCATGACCTTAAGCTTTGTGTTCATGCTGCATCGCTTGCTTTTTGTGCTGCTGTTAAGTTT GTTGGTTTTTGTCAATGTGGTGTGTCCTTACTGGCTTATAAGGATTCAGGAATACAAGTTTGAGATCAATGGTCCTTGGG ATGAGGCTAAGCTTTGTTTTGATATTACTGACTGA
CDS sequence (LotjaGi3g1v0103000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCATAGGTTGGCTGGTGGTAATTCTTCTCCACCTCGACCCAGATGGAGAAAAGTAGCATATGGTGGCATGCAACC TGGATATGATGACAATTATACTGATGAATCTTTCCTTGAAGGAATGGTCATGAATGCCAGTGTTGTAAAAAGGGACATGG TAAAGGTGATGCTGGACTCCGTTTCCATTTCGGAATATTTATGCATTGTGGCTCTTGTTGTCTTGGTCTGGGCTCGCACA CTTACATCAACTCTTGATGAAAATTCCCTTTTGGTTATTGATGTAAGTCTTCTTGTTTCAGGTTTTCTAATCCTCCTTTT CACTCAAGAAATGCTTTCCCTTGGTCTTCTCCTTCATTATATCCTCAATATCTCATTTTTCATAACTGGATTATATGTTT TGGCTCCCATCTATCAAACACTCACAAGGTCCATTAGTTCAGATTCCATCTGGGCTGTAACTCTATCACTTCTCATGCTT CACCTTTTTCTCCATGACTATTCAGAATCCACTGTCAAAGCCCCAGGGGTTAAGAAGAATCCTGCATTGACCAATTGTAT ATCAGTAAATGCTTCTGTAGTTGCGTCAGTTTTCATTGCTTCGCGTCTTCCATCGAGACTACACGTGTTTGCTATCATGT TATTTTCATTGCAGGTTTTCCTTTTTGCTCCACTGGTTACTTACTGTATCAAAAAATATTCCTTCACCTTACACCTATAC TTTTCCTTTAGTTTGATGGCCATGACCTTAAGCTTTGTGTTCATGCTGCATCGCTTGCTTTTTGTGCTGCTGTTAAGTTT GTTGGTTTTTGTCAATGTGGTGTGTCCTTACTGGCTTATAAGGATTCAGGAATACAAGTTTGAGATCAATGGTCCTTGGG ATGAGGCTAAGCTTTGTTTTGATATTACTGACTGA
Protein sequence (LotjaGi3g1v0103000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHRLAGGNSSPPRPRWRKVAYGGMQPGYDDNYTDESFLEGMVMNASVVKRDMVKVMLDSVSISEYLCIVALVVLVWART LTSTLDENSLLVIDVSLLVSGFLILLFTQEMLSLGLLLHYILNISFFITGLYVLAPIYQTLTRSISSDSIWAVTLSLLML HLFLHDYSESTVKAPGVKKNPALTNCISVNASVVASVFIASRLPSRLHVFAIMLFSLQVFLFAPLVTYCIKKYSFTLHLY FSFSLMAMTLSFVFMLHRLLFVLLLSLLVFVNVVCPYWLIRIQEYKFEINGPWDEAKLCFDITD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 55 | 55 | - | – | |
| PIRSF | 6 | 304 | 299 | 1.5E-82 | ||
| PANTHER | 8 | 303 | 296 | 4.9E-107 | ||
| PANTHER | 8 | 303 | 296 | 4.9E-107 | – | |
| Pfam | 17 | 294 | 278 | 1.8E-74 | ||
| TMHMM | 56 | 78 | 23 | - | – | |
| Phobius | 56 | 78 | 23 | - | – | |
| Phobius | 79 | 89 | 11 | - | – | |
| Phobius | 90 | 108 | 19 | - | – | |
| TMHMM | 90 | 112 | 23 | - | – | |
| Phobius | 109 | 119 | 11 | - | – | |
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 120 | 138 | 19 | - | – | |
| Phobius | 139 | 149 | 11 | - | – | |
| TMHMM | 145 | 164 | 20 | - | – | |
| Phobius | 150 | 168 | 19 | - | – | |
| Phobius | 169 | 179 | 11 | - | – | |
| Phobius | 180 | 201 | 22 | - | – | |
| Phobius | 202 | 206 | 5 | - | – | |
| Phobius | 207 | 230 | 24 | - | – | |
| TMHMM | 208 | 230 | 23 | - | – | |
| Phobius | 231 | 236 | 6 | - | – | |
| TMHMM | 237 | 256 | 20 | - | – | |
| Phobius | 237 | 254 | 18 | - | – | |
| Phobius | 255 | 259 | 5 | - | – | |
| Phobius | 260 | 280 | 21 | - | – | |
| TMHMM | 261 | 280 | 20 | - | – | |
| Phobius | 281 | 304 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | GPI anchor biosynthetic process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Phosphatidylinositol N-acetylglucosaminyltransferase activity | Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + phosphatidylinositol = UDP + N-acetyl-D-glucosaminylphosphatidylinositol. |
Expression pattern of LotjaGi3g1v0103000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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