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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0104000 |
Transcript ID | LotjaGi3g1v0104000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT4G02550.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|K7KYF4|K7KYF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0104000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12888581..12891756) extracted from Lotus japonicus Gifu genome v1.2.
AGATGAGAGGTGAAATGAATAGGTGATCTTGTAAATAATACTCAACACCGCGTTGCACCTGATCACTTGACTGGAATATA CCGGTCATTTTCTCTACTGCGTTTGGTTCTCGAGAAAATGCAAAACCAAAATTTTCCCATCTTTTTTCCCGAGAAAACCC TAACAACCGTAATGAGCTATCACAGTTCACACCCTGCACTCCAATGATCCATCCCCGATACCAGTCGCTTCCCTGTATGT AAGATCCAATCTCCATTAATCCGTTACAGTAGGTATTCAATTTCTTCCCTGCATTCTCTTCAGTAATCACATTTTTGTTT TTGATTTTTTGTTTGTTTGATTGATTTTGGTTATGGTGTTTTTCTTTGCGTAGTGTAATAGAACTTGTGTTCTTACAAGT GTTTGAAAATGGTTTTCGTTGAGCTTGATTTTTTGCTTCTTGTTGTTGGGAAGTAGTGGAAGAAGCATTTGTTAGGACCA GAATGAGTGAACATTGGTTTTTGATTAATGTGGTGAAAGTAGATGAAGCAGTAGCTAGTTTGGTAGATTGGTGTTTAGAA TCTGATTTTGTTTTGCAATTATTAGCTGGATATTTATGTAAGCAATTATTGATGATATTCGGCTGCAAGTAGGCATTTGT AGTAGGAAAATTCCTTTTGGATATTCTGGTTAATGTATTTCTGGGGCAAGTTTTTAAAGCGGTTTCTTGTTAATTTTTAT TTTTGATTTTGTTGTCCATATAATATGATCTACTTCAGTTTGCACGAGATCGTTAGTTACTCGTTCTGTCAGTGTTGTTA ATCGCGGATCGCAGACTATAGCGGTAAGCCTAAAATCTGCTATTTCCATCCTCTTAAAGCGGAGAATAGTGGAAAAGCGG CAAATAGCGGGTAATAGTGGAGCAGCGGTAAGCCAAAAAAGCGCTACGCTGTAGCGCTGTAGCACCGCTATTTGACAACA CTGGTTTAGAAATGGCAAAAGTACCTACTTCAGCTTAAGTCAGTGGCAAAAGGTTGCTTGTGTCAGTTTGTCAGAACATT TTGAGGAATTGTTCACCGGAGTCACCCTTCACTTGTGAAGCTCTAGCTGTTTATGTTTGATTTTCCGACATCAAGTTGCT GGTTCTTTCAAAGCCATCTTCTAAAGTTGAAAATTCTAGACATACTAGGAATGGGGAGGGAAATCAAGTAAAGATGCTCT GTTTTTCTGCATATCAAAGATAGCACACACCATGAAACAATCTTGAGAGAAGTTCCTACACGAGCCCTAAACTTAACATT ATCGGACAAAGTGTTTTGGGGCAAAGAAGCCATCTTAAAGCTGTGCACATTCTCCTCCAATTAAATGCACCTAAGGATTT CATACCTTGCGCACTTGTTTTTGAGAAGAGTTTCTTCTGGATGAATGAATTTTTGGTTAATTTATTCTTACACTTAATTT CATGTTTGTTGAATTTGTCCTTACTCTTTGTGTTGGAATAGTCTATCATTAGACATGTTTCATAATTACTCACCTGGTGG AAAAAGGCTCTATATGCTTTGTTGTACATTAAAGTCGTTTTCTGCACTTATTTCCCCATTCACAGTTTGCATTTTTATTT CACATATAAGTAATTGTTCACTAGCTATCCAAACTGCAATTTTGTGATTATGGATATTACATTATGCATCTACTGTTTGT TTCTTTACCAGGCCCTTCCTTTCCTTTTTCTTTCACAAAACCTTTATTATTCATGTTTCATATTGTATTTAAGTAAAGGG GAATTACCAATAAGGTAAATATAAATGGTTATATGTACTGAAAACAAAATGTATGAACACTTGCATTGTTTTATTGAACA GTATATTTACACATATCCGTGTTTTTGTAGAAATGGAGCACTATGATTTGCAAAGACAGAGAAGGGATCTGAAAAACAAA GGAAGAAATGTTGTGTGGTCAATTGCGATGGACAAATGTCTGATTGAAGAGCTGGCAGTTCAGGCAAAAAGTGGAAACAA AATTGACAAATGTTTTAACGAAAATGCCTATTCTGCTGCCTGTTTAGCTGTAAACACTTGTTTCAACTTGAAATTGAATA ATCAGAAAGTTATCAACCGCCTGAAAACAATCAAGAAGAGGTATAAAGTAATGAAAGATATGCTAAGTCAGGATGGTTTC TGGTGGAATCCAAACACAAAGATGATAGAGTGTGACAGTGATGAGCTCTGGAAGAAGTATATTGCGGTAAGTTTATCTTT CATTTTTCTCCCTTCTTGAATGTCTATGTATTTATGTAAAATACATTGATTCCAGTGTTCTTTGATTCATTGGATAGGCA CATCCTGACGCAAGAGGATTCGGTGGAAAGCAAATAGAGATGTATGATGAACTTAAAATTGTTTGTGGAAATTATCAAGC TCCTAGTCGCTGGGCTAAGATGAACAATGGTAGCCATCAAATGGACATGAAGAATTGTGAGGATGAATCAACCTCCTTTG TTTCTCCCAGTTCAGAAGACATGAGTGAGACAGACGGAACCGAATCATACCCTGGGCCTCCAGAGTATGAACCGATGCCA GATGATTTTCAAGAGCCTCCTGTGGTCCAGCCTCCAAGACAACTTCCCAAACGACCTCGTGTCTCAGATGCTCTTGAGGA TGCATTGATGACAGTAGCATCAAGCCTCCGGCGTTTGGCTGATGCGATGGAGCAAAGCCAATACTCAATTGATTCAACTG AGCTATTGCAGGCTGTGATGGAGATCGATGGGTTGGAAGAGGGTAAACAGATGTACGCATTTGAATATTTAAATGCTGAT CCTGTCAAAGCCAGAGCCTTCCTGACATACAATTCCAGGATGAGAAAGATTTACCTGTTTAGACTTTTCTGGTGGTGGTG AGGGTGACCAGTGTATAGATTATCTGGATTCTGGATATTCTGTTTAGGGACTTCTTCTATTGTTTAATCAAATTATTCAT TGATGTGTTGCGAGGATACTTGAATGTATAGACTCTAAACAGTGATTTAAGATAGCCATATACAAGGAATGTTAAAGACA TTGTCTACTATACTTTAAAAAAAGACATTGTCTACCAAGCAAATTTCTTTGATGGATGAGGGAGTTTAACACATCTTTTA CTCTTACTTCAATTTTTTTGGTAGATTTACTCTAACTTTTTTTTAGAGTGATAGAC
CDS sequence (LotjaGi3g1v0104000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCACTATGATTTGCAAAGACAGAGAAGGGATCTGAAAAACAAAGGAAGAAATGTTGTGTGGTCAATTGCGATGGA CAAATGTCTGATTGAAGAGCTGGCAGTTCAGGCAAAAAGTGGAAACAAAATTGACAAATGTTTTAACGAAAATGCCTATT CTGCTGCCTGTTTAGCTGTAAACACTTGTTTCAACTTGAAATTGAATAATCAGAAAGTTATCAACCGCCTGAAAACAATC AAGAAGAGGTATAAAGTAATGAAAGATATGCTAAGTCAGGATGGTTTCTGGTGGAATCCAAACACAAAGATGATAGAGTG TGACAGTGATGAGCTCTGGAAGAAGTATATTGCGGCACATCCTGACGCAAGAGGATTCGGTGGAAAGCAAATAGAGATGT ATGATGAACTTAAAATTGTTTGTGGAAATTATCAAGCTCCTAGTCGCTGGGCTAAGATGAACAATGGTAGCCATCAAATG GACATGAAGAATTGTGAGGATGAATCAACCTCCTTTGTTTCTCCCAGTTCAGAAGACATGAGTGAGACAGACGGAACCGA ATCATACCCTGGGCCTCCAGAGTATGAACCGATGCCAGATGATTTTCAAGAGCCTCCTGTGGTCCAGCCTCCAAGACAAC TTCCCAAACGACCTCGTGTCTCAGATGCTCTTGAGGATGCATTGATGACAGTAGCATCAAGCCTCCGGCGTTTGGCTGAT GCGATGGAGCAAAGCCAATACTCAATTGATTCAACTGAGCTATTGCAGGCTGTGATGGAGATCGATGGGTTGGAAGAGGG TAAACAGATGTACGCATTTGAATATTTAAATGCTGATCCTGTCAAAGCCAGAGCCTTCCTGACATACAATTCCAGGATGA GAAAGATTTACCTGTTTAGACTTTTCTGGTGGTGGTGA
Protein sequence (LotjaGi3g1v0104000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHYDLQRQRRDLKNKGRNVVWSIAMDKCLIEELAVQAKSGNKIDKCFNENAYSAACLAVNTCFNLKLNNQKVINRLKTI KKRYKVMKDMLSQDGFWWNPNTKMIECDSDELWKKYIAAHPDARGFGGKQIEMYDELKIVCGNYQAPSRWAKMNNGSHQM DMKNCEDESTSFVSPSSEDMSETDGTESYPGPPEYEPMPDDFQEPPVVQPPRQLPKRPRVSDALEDALMTVASSLRRLAD AMEQSQYSIDSTELLQAVMEIDGLEEGKQMYAFEYLNADPVKARAFLTYNSRMRKIYLFRLFWWW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 305 | 304 | 1.0E-156 | – | |
PANTHER | 2 | 305 | 304 | 1.0E-156 | – | |
Pfam | 22 | 116 | 95 | 8.4E-23 | ||
MobiDBLite | 163 | 202 | 40 | - | – | |
MobiDBLite | 163 | 184 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0104000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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