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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0112200 |
| Transcript ID | LotjaGi3g1v0112200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methylthioribose-1-phosphate isomerase; TAIR: AT3G07300.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q54EY2|EI2BB_DICDI Translation initiation factor eIF-2B subunit beta; TrEMBL-Plants: tr|A0A151TRK6|A0A151TRK6_CAJCA Translation initiation factor eIF-2B subunit beta; Found in the gene: LotjaGi3g1v0112200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13835684..13841590) extracted from Lotus japonicus Gifu genome v1.2.
GCCGCACCCTGTCACCTTGTGTATGTTTTCTACTTGCTGTGTTGCCCTTGATTCTAGAATGCTAGTCATTTTTTCCCTAT TCTTTTCAGGTTGTTGAGTTTGGCATCAAGATGCCGGATGTTCATGTTCTTGTTAACGATTTTGTCAATCAGCTCAAAAA GCGGTAACTAAATTTTTGAGGTTTAGGAACTAATTTTTGATATTTTTATCATTTAATTGGTGGTATTTATTTATTTTTTG TGTACTGTGATGCTAGTAAAATTGAAGGTTCACAGGCCACAGCAAAGCAGACAGCAGAGTTGCTTCGGTCTGTGATTTCG CAGCAGCGGTTGGCGCAGACGAACCAGGCTACGGCTCTAATTAATGCAGTAAGGGCTGTGGGGGAGAAGCTTATTGCTGC TAATCCTGTTGGTATGCCAAGATTAAGGCTTATTTTAGCTAGAGATATGTATAATGTATATTGTCAATGTTGTGTTCGAT GTTTTTTATGGTGGTCGAGTATTTTTGGGGGGTTATTGCTGTTTGATTGCCTAGTTCTACTTTTGTTGAAGGATGCTTTA CAGTCATGTGCTCAATGGTTTGTTGGAATTTATGAATTATGGAAATCAATTTATTAACATGTTATCTATGTGATTGCAGA GCTAGCTGTGGGGAATATTGTGAGGCGTGTTTTGCACATTATAAGAGAGGAGGATCTTTCTCTTGCTACAGCTGCAATAG CTGGTTTGGGGCTATCAGGTGTAAGTGATGATGAAGATGATGTGGAGCGAGGTGATCATCCTGTTTTATCTGCTGCTGCT GTTGCAGCTGCGGCAAGAAGTACCTTGCGTCCACCATCATTGCAAACTCTGCTAGAGGATATGCCTGAAACAGCCGCTAT TCCACACACATCTTCCTCAGGGGGTGATTCGGAAGGGAAAAGTAGATGTGAGGATGTTTGAACTTCTTATATTCATTGAC TGTGTTGTATATTTTTTACTTTTTGACTTGATATGCATATGCATATTCTTTTTTACTGGATTTGGAGTGCAAAAGCTATT GTTATTTTATCTTATTTATAAGTTACTTTCTTGGATGCAATTACTGGTAACAAAATGCTATTTTTTTCCTCAAAATTTTA AGATGTTAGAATTTCTCATTGACATTGCTGGGTAGTTTATTGGTTGATCAATATGATGATTGTATAGTATGGGTTCATTC TATCTCTGTGGGCATTTGATGATGGAAAAATTGCTGTTCTGATTTTTAATTGCTTTTTGTCTATTTGAGTTTGAGTTTCT ATTTTCCTTTGTTACAGCTGTTGATAAAAGTTCAAGAGGTCGGAAGTTGAAGCATGATGTCATTGAAGCCGTTAATGAAC TTATTCAAGACATTTCCAGTTGCTATGAGCAAATAGCTGAGCAAGCAGTAGAGCACATTCATCAGAAGTTAGTTTAACCT CGAACTATTCTATGATCTATTTTGTCTTTTGCTGCTTTTATGTGCTTGTTTGGACACATAATAACGTATTATTCTTGCTC CCCCAATTTTTTTAGCCTGCAACGTGCCAGGAAATGCTATTTGATTTTTTTAATGCTAAGATTTCTTACCATGAATAGTC ATTGTAAAAGGTTTTGTCGTGATCCAAGTATCCCTAAAGCTTAAGCTTTTGGGTGAATATACATGAATGGGCTTGAAGTG TGGACATTGCACATGCTCGCTCACCTACCTTGTGTTATAATTAAACTTTTCTATTGGGGGCAACAATGGGCATTGATGCT CTGACTTTGATACCATGTCATGAACCAATTATTCAAAAATTCAAGTTGTTGGCGGAGACACATGAGTGATTTTATATTAC ATTTCTGAAAGGTTCTAATACCCAGGAATTATCTTCATGGTTGATTGAAAGCTTTTGTTTCTTGAGTGGAGTATTTTATA CCATATTCTATACTGAACATTATGGCTATGTTTTGATTGATCGAATGGGATAGAATGGAGGGGAATGAAATGGAATTACA TTATGTTCCGTTGTTTGGATTTGTTATAATATGATGGAATGGGAAATAATGGAATCCATTGCATCCCATTCTATTGTATC TCCTTATTTTTCTTCCCTCCCAATTTGGATGGGGTATGTGATGGAATCAATAGCAAGTTAATTTCTTATGTAATGACCTC TTTATCCTTATTTCTTTTTATCTTTTGCAAAAGATGTCTTAATGGTTTTAAAGGCAAGGGTAATAAAGGAATAATAAAAG TTATAATTTATTTTGTTCCATCCTCTATCCAAACAATGGAATTATATCTTAATTCTGTTCTATTATAAAATATCCAAACA ATGAAGTGGTATTTTTATACCACTCCTTTTTGTTGTACTCTATTCCATTATAATCCATTCCATTCTGTTCCATCTCCTTC CACGAATCCAAACATAGCCTACATCAGATTATAAATATTTCTACGTGAGTTAAATTCTTAATCTTAAACTGAAATATTAT TTTTATTCATAACAACTTTATAAGAGGCCATGCATTTGTTGGAAGTTTAATGCTTTACTTTTCGTGCTATCTACATTATT TTGATAGCGGGACAATTGGACTGAAATGGCAAGGACCTTTCTATTTCTTAGCTTACTTTGGAGACTGGGTTACCTTCAGG CATTATTGGTCTTGGATAACAAAAAAGTGAAATAACCATTTATTGTTTTATAAATATGTGGCAGTTTTATTACCGGAGAT AGCTACTATTGGCTGACATAATTGGTCAAAAAGGAATATTCAAGTGCATTACATAATATTAACTACATCATGCATATATT TGATAAGTGCTGTGTAATTATTTACCCCATCAAACAGCAAAGTGACATGGTTTGTTACTTTTTTTTCATTGGAAAAATGA TTATTTTGTCCATCCGTTTTTCTCTAAATCCTGATTAGATTGTAATAGAATAACTGACAGTATCTGAAAGAATGCTGAAT CAGTAACTAACTGTATTGGGATTCTGTATTTTCATAACCCATTGATAGTCTTTATATAGATTCAGTGATGTAGCTTCTTG TAGAAGCTTTACACTGGTAGAATTACTATTCTACCCAACTAACTACATACATAGTATACTTTACTATTATACCCTTAACC AACTATTTACATAGTATACTCTTATAGATTGGGTTCCATATTTTCTTATACATCATTGTTTGTTTCCTTAATTGATAAGG ATTAAGAATCTAGTGTTAATATAAATATAAATAATGATTAGCTCTTTGTCTTCTATAATAACATCTTTTATTATTTTTTG TTTTCATTTTCCTCCCTTTATACTAAAAAGCTAACCCCATAACTTCAGCCTTAAATAACCAAGGCAAATTTTATGTTGAA TTATGTGACTGTCTTGATGCTATGATCTTCTTTTTCTTGGTACAATTATTATGGGAAATTCTTTTGTTCTTCTTATTTAT TTACTCTGCTATTTGCCTGATTTTCAGTGAGGTAATATTGACACTAGGCAGTTCAAAGACAGTGTTGGAATTTCTTTATG CTGCAAAGGAAAAAAAGAGATCGTTTAAGGTCTTTGTTGCTGAAGGTGCTCCAAGGTTGGTAGTAGTGCCTATCTCCTAT TTGCAAAGAATGCTTATAACGAATAGATTTGTTTATATTCTTCTTATGACTGTTCGATGTTCACTGTGTATGCAATCAGA TATCAGGGACATCTCCTTGCGAAGGAATTGGCTGCTAAAGGATTACAGACCACAGTAATCACGGATTCTGCTGTTTTTGC CATGATTTCCAGAGTAAACATGGTATGAGAAAGTCCTGCCATTACTTTTTGGAATCAAGACTCATGCTGAATTTAAATCT GATTTTAACTTACCATTATATAGGTTATAGTTGGAGCTCATGCTGTCATGGCTAATGGTGGTATTGTTGCCCCAGTTGGC TTAAACATGGTTGCCCTGGCAGCTCAGAGGCATGCTGTTCCTTTTGTTGTTCTCGCAGGGAGTCACAAGGTGAATTGTTA ATTTTAATCTTTATCTTTCCATCTATCATGTTTTACGAATCAAGAATTATTGTGTCTTTTGTTATAACCCCATAATTTAT ATTCTATTCTGTTAAAATATGGAAATAGGATATTAGTTTACAGTCAAATCTGCAGGAGGCAAAGAATTCCATATTTTTCT CCGCGCATTTAGAATTGAAAATTTAGTCTTGAGTGATTGAATAGAAGAGTACAGATTTAAGTCTGAATACCAAAAATCAA AATAATTTTTAAGTCAATATGTTGTTTTTAATTTGTCTTGCTGAGTTTTAATAGTGGGTCGCCAAACAGTTTTTTAGTTG AAAATTAAATTTTGGGCATAAAGTTAGGTTCTGAATTTAATTCAAATGTCATTTACATGGATATGCTTCTAGTTTTAACT GATGTTTTCTTTTTTTAAAATAAAAGTAGCAATGGGGAGTGAGCATAGAGAGGCTTAATTAGTTATGAAAGGCCAACCCT AAATGGGTGCTGCAAATATTTTGGTTCTTGTTTAGGCTATTTAGAAAATTATTATGCATTAAAAGTGTGAAAAGGAACTA GAGACAAATGATTTGATTGACTTTGGACTGTACAATAACATCAGTTATATTTGTCCCTTAAATTTTTGTTTATTGGGCTG CTAAGCTGGCCTACATCCTCAGAAAAAAGAACTTATATTTGTGCCTTAATAATTGAATTATATTCGAAGTCCCTTTATGT ATTTTGTTGTTCAAATTAGTTCTCATATCAAGTATTTCAAAGACTAATTTAATTGATGAAATACATATTTATGGATTAAT AGGTAGACAACATGAACATGTTATTATTCAGGGACCTTTAACGTAATTTTTATTATGAAGAGACTAATATGAAAATGTTG TATTTTTAGGTATTGACTATTTACTCTATGTACAATTTTTTGAAATATAGACCTAAACTTAGTTTAAAAAATTGTTAACT AATTTTCTTATTACAATAAGTGGATTGTTAAACATGGTATAAGTTACATATATCCATATGAACCTTAATTATTCCAATTC TACAAGTTTTGGAAAAACACAAATTTATTTTCTGTTATAAAAAATTGTATTATCAGAAAAGATGCCTAATGCCAATAGAT TTTCTAAATCTGCTTCACTATACTTGGTTGCAAACAGTATATACTATATAGCTGATCTCTAAGGAGTTTAAGTCTAGATA TTTCGAACTGTTTAAATTGGTTAATACTCCTGCCCAATGATTGGATTTGTAAAGACTGGAAATTTGGAGTTGAACAATAT TTTGTATGATGACAATGAGCTAGCTGCTTCTTAGTTATTGATTCACTTAAGACGTGTCCAGCTTATGATAATATTTAATA ATATATAATACCCCCAGGTTTTCTATTAGTTATTAGTAAGGAAACTTTGGTGCCTTTTGGAATTATATTGTGATCTAGTT CATCATTTCAGTTGCCAACTGTTTGGCTTTTGTTAAATGTTGCTTTATCTTATGGACAGTTGTGCCCTTTGTATCCGCAC AATCCTGAAGTGCTATTGAATGAGCTGCGATCACCATCTGAGCTACTTGACTTTGGGGATTTCTCAGATTGCTTGGATTC TGCAAGCGGCGCTGGTTCGCTTCATGTCGTTAATCCAACATTTGATTATGTTCCACCAAAACTTGTCAGTCTATTCATCA CAGACAAGTGAGTTGAACTTAAATTGATCGAGAAAATCTAATCTGTTTCATTTTATGCATTGACTTTTGAATATGTGTAC TAATTGGTTTCTTTTATCCATTTTCTGTTCTGAAAATTATTTCTTGTCAGGGGAGGGCATAACCCATCATATATGTACCG GCTCATAGCAGATTACTACTCATCTGATGATTTGGTGGTGAAACAAAGACGTGCTACAGGGAGTTGA
CDS sequence (LotjaGi3g1v0112200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGGATGTTCATGTTCTTGTTAACGATTTTGTCAATCAGCTCAAAAAGCGTAAAATTGAAGGTTCACAGGCCACAGC AAAGCAGACAGCAGAGTTGCTTCGGTCTGTGATTTCGCAGCAGCGGTTGGCGCAGACGAACCAGGCTACGGCTCTAATTA ATGCAGTAAGGGCTGTGGGGGAGAAGCTTATTGCTGCTAATCCTGTTGAGCTAGCTGTGGGGAATATTGTGAGGCGTGTT TTGCACATTATAAGAGAGGAGGATCTTTCTCTTGCTACAGCTGCAATAGCTGGTTTGGGGCTATCAGGTGTAAGTGATGA TGAAGATGATGTGGAGCGAGGTGATCATCCTGTTTTATCTGCTGCTGCTGTTGCAGCTGCGGCAAGAAGTACCTTGCGTC CACCATCATTGCAAACTCTGCTAGAGGATATGCCTGAAACAGCCGCTATTCCACACACATCTTCCTCAGGGGGTGATTCG GAAGGGAAAAGTAGATCTGTTGATAAAAGTTCAAGAGGTCGGAAGTTGAAGCATGATGTCATTGAAGCCGTTAATGAACT TATTCAAGACATTTCCAGTTGCTATGAGCAAATAGCTGAGCAAGCAGTAGAGCACATTCATCAGAATGAGGTAATATTGA CACTAGGCAGTTCAAAGACAGTGTTGGAATTTCTTTATGCTGCAAAGGAAAAAAAGAGATCGTTTAAGGTCTTTGTTGCT GAAGGTGCTCCAAGATATCAGGGACATCTCCTTGCGAAGGAATTGGCTGCTAAAGGATTACAGACCACAGTAATCACGGA TTCTGCTGTTTTTGCCATGATTTCCAGAGTAAACATGGTTATAGTTGGAGCTCATGCTGTCATGGCTAATGGTGGTATTG TTGCCCCAGTTGGCTTAAACATGGTTGCCCTGGCAGCTCAGAGGCATGCTGTTCCTTTTGTTGTTCTCGCAGGGAGTCAC AAGTTGTGCCCTTTGTATCCGCACAATCCTGAAGTGCTATTGAATGAGCTGCGATCACCATCTGAGCTACTTGACTTTGG GGATTTCTCAGATTGCTTGGATTCTGCAAGCGGCGCTGGTTCGCTTCATGTCGTTAATCCAACATTTGATTATGTTCCAC CAAAACTTGTCAGTCTATTCATCACAGACAAGGGAGGGCATAACCCATCATATATGTACCGGCTCATAGCAGATTACTAC TCATCTGATGATTTGGTGGTGAAACAAAGACGTGCTACAGGGAGTTGA
Protein sequence (LotjaGi3g1v0112200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPDVHVLVNDFVNQLKKRKIEGSQATAKQTAELLRSVISQQRLAQTNQATALINAVRAVGEKLIAANPVELAVGNIVRRV LHIIREEDLSLATAAIAGLGLSGVSDDEDDVERGDHPVLSAAAVAAAARSTLRPPSLQTLLEDMPETAAIPHTSSSGGDS EGKSRSVDKSSRGRKLKHDVIEAVNELIQDISSCYEQIAEQAVEHIHQNEVILTLGSSKTVLEFLYAAKEKKRSFKVFVA EGAPRYQGHLLAKELAAKGLQTTVITDSAVFAMISRVNMVIVGAHAVMANGGIVAPVGLNMVALAAQRHAVPFVVLAGSH KLCPLYPHNPEVLLNELRSPSELLDFGDFSDCLDSASGAGSLHVVNPTFDYVPPKLVSLFITDKGGHNPSYMYRLIADYY SSDDLVVKQRRATGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 409 | 409 | 1.2E-200 | – | |
| PANTHER | 1 | 409 | 409 | 1.2E-200 | – | |
| SUPERFAMILY | 5 | 404 | 400 | 5.12E-84 | ||
| Pfam | 19 | 389 | 371 | 1.7E-71 | ||
| MobiDBLite | 149 | 173 | 25 | - | – | |
| Gene3D | 201 | 400 | 200 | 3.3E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. |
Expression pattern of LotjaGi3g1v0112200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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