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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0112200 |
| Transcript ID | LotjaGi3g1v0112200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methylthioribose-1-phosphate isomerase; TAIR: AT3G07300.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q54EY2|EI2BB_DICDI Translation initiation factor eIF-2B subunit beta; TrEMBL-Plants: tr|A0A151TRK6|A0A151TRK6_CAJCA Translation initiation factor eIF-2B subunit beta; Found in the gene: LotjaGi3g1v0112200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13835794..13841590) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCGGATGTTCATGTTCTTGTTAACGATTTTGTCAATCAGCTCAAAAAGCGGTAACTAAATTTTTGAGGTTTAGGAAC TAATTTTTGATATTTTTATCATTTAATTGGTGGTATTTATTTATTTTTTGTGTACTGTGATGCTAGTAAAATTGAAGGTT CACAGGCCACAGCAAAGCAGACAGCAGAGTTGCTTCGGTCTGTGATTTCGCAGCAGCGGTTGGCGCAGACGAACCAGGCT ACGGCTCTAATTAATGCAGTAAGGGCTGTGGGGGAGAAGCTTATTGCTGCTAATCCTGTTGGTATGCCAAGATTAAGGCT TATTTTAGCTAGAGATATGTATAATGTATATTGTCAATGTTGTGTTCGATGTTTTTTATGGTGGTCGAGTATTTTTGGGG GGTTATTGCTGTTTGATTGCCTAGTTCTACTTTTGTTGAAGGATGCTTTACAGTCATGTGCTCAATGGTTTGTTGGAATT TATGAATTATGGAAATCAATTTATTAACATGTTATCTATGTGATTGCAGAGCTAGCTGTGGGGAATATTGTGAGGCGTGT TTTGCACATTATAAGAGAGGAGGATCTTTCTCTTGCTACAGCTGCAATAGCTGGTTTGGGGCTATCAGGTGTAAGTGATG ATGAAGATGATGTGGAGCGAGGTGATCATCCTGTTTTATCTGCTGCTGCTGTTGCAGCTGCGGCAAGAAGTACCTTGCGT CCACCATCATTGCAAACTCTGCTAGAGGATATGCCTGAAACAGCCGCTATTCCACACACATCTTCCTCAGGGGGTGATTC GGAAGGGAAAAGTAGATGTGAGGATGTTTGAACTTCTTATATTCATTGACTGTGTTGTATATTTTTTACTTTTTGACTTG ATATGCATATGCATATTCTTTTTTACTGGATTTGGAGTGCAAAAGCTATTGTTATTTTATCTTATTTATAAGTTACTTTC TTGGATGCAATTACTGGTAACAAAATGCTATTTTTTTCCTCAAAATTTTAAGATGTTAGAATTTCTCATTGACATTGCTG GGTAGTTTATTGGTTGATCAATATGATGATTGTATAGTATGGGTTCATTCTATCTCTGTGGGCATTTGATGATGGAAAAA TTGCTGTTCTGATTTTTAATTGCTTTTTGTCTATTTGAGTTTGAGTTTCTATTTTCCTTTGTTACAGCTGTTGATAAAAG TTCAAGAGGTCGGAAGTTGAAGCATGATGTCATTGAAGCCGTTAATGAACTTATTCAAGACATTTCCAGTTGCTATGAGC AAATAGCTGAGCAAGCAGTAGAGCACATTCATCAGAAGTTAGTTTAACCTCGAACTATTCTATGATCTATTTTGTCTTTT GCTGCTTTTATGTGCTTGTTTGGACACATAATAACGTATTATTCTTGCTCCCCCAATTTTTTTAGCCTGCAACGTGCCAG GAAATGCTATTTGATTTTTTTAATGCTAAGATTTCTTACCATGAATAGTCATTGTAAAAGGTTTTGTCGTGATCCAAGTA TCCCTAAAGCTTAAGCTTTTGGGTGAATATACATGAATGGGCTTGAAGTGTGGACATTGCACATGCTCGCTCACCTACCT TGTGTTATAATTAAACTTTTCTATTGGGGGCAACAATGGGCATTGATGCTCTGACTTTGATACCATGTCATGAACCAATT ATTCAAAAATTCAAGTTGTTGGCGGAGACACATGAGTGATTTTATATTACATTTCTGAAAGGTTCTAATACCCAGGAATT ATCTTCATGGTTGATTGAAAGCTTTTGTTTCTTGAGTGGAGTATTTTATACCATATTCTATACTGAACATTATGGCTATG TTTTGATTGATCGAATGGGATAGAATGGAGGGGAATGAAATGGAATTACATTATGTTCCGTTGTTTGGATTTGTTATAAT ATGATGGAATGGGAAATAATGGAATCCATTGCATCCCATTCTATTGTATCTCCTTATTTTTCTTCCCTCCCAATTTGGAT GGGGTATGTGATGGAATCAATAGCAAGTTAATTTCTTATGTAATGACCTCTTTATCCTTATTTCTTTTTATCTTTTGCAA AAGATGTCTTAATGGTTTTAAAGGCAAGGGTAATAAAGGAATAATAAAAGTTATAATTTATTTTGTTCCATCCTCTATCC AAACAATGGAATTATATCTTAATTCTGTTCTATTATAAAATATCCAAACAATGAAGTGGTATTTTTATACCACTCCTTTT TGTTGTACTCTATTCCATTATAATCCATTCCATTCTGTTCCATCTCCTTCCACGAATCCAAACATAGCCTACATCAGATT ATAAATATTTCTACGTGAGTTAAATTCTTAATCTTAAACTGAAATATTATTTTTATTCATAACAACTTTATAAGAGGCCA TGCATTTGTTGGAAGTTTAATGCTTTACTTTTCGTGCTATCTACATTATTTTGATAGCGGGACAATTGGACTGAAATGGC AAGGACCTTTCTATTTCTTAGCTTACTTTGGAGACTGGGTTACCTTCAGGCATTATTGGTCTTGGATAACAAAAAAGTGA AATAACCATTTATTGTTTTATAAATATGTGGCAGTTTTATTACCGGAGATAGCTACTATTGGCTGACATAATTGGTCAAA AAGGAATATTCAAGTGCATTACATAATATTAACTACATCATGCATATATTTGATAAGTGCTGTGTAATTATTTACCCCAT CAAACAGCAAAGTGACATGGTTTGTTACTTTTTTTTCATTGGAAAAATGATTATTTTGTCCATCCGTTTTTCTCTAAATC CTGATTAGATTGTAATAGAATAACTGACAGTATCTGAAAGAATGCTGAATCAGTAACTAACTGTATTGGGATTCTGTATT TTCATAACCCATTGATAGTCTTTATATAGATTCAGTGATGTAGCTTCTTGTAGAAGCTTTACACTGGTAGAATTACTATT CTACCCAACTAACTACATACATAGTATACTTTACTATTATACCCTTAACCAACTATTTACATAGTATACTCTTATAGATT GGGTTCCATATTTTCTTATACATCATTGTTTGTTTCCTTAATTGATAAGGATTAAGAATCTAGTGTTAATATAAATATAA ATAATGATTAGCTCTTTGTCTTCTATAATAACATCTTTTATTATTTTTTGTTTTCATTTTCCTCCCTTTATACTAAAAAG CTAACCCCATAACTTCAGCCTTAAATAACCAAGGCAAATTTTATGTTGAATTATGTGACTGTCTTGATGCTATGATCTTC TTTTTCTTGGTACAATTATTATGGGAAATTCTTTTGTTCTTCTTATTTATTTACTCTGCTATTTGCCTGATTTTCAGTGA GGTAATATTGACACTAGGCAGTTCAAAGACAGTGTTGGAATTTCTTTATGCTGCAAAGGAAAAAAAGAGATCGTTTAAGG TCTTTGTTGCTGAAGGTGCTCCAAGGTTGGTAGTAGTGCCTATCTCCTATTTGCAAAGAATGCTTATAACGAATAGATTT GTTTATATTCTTCTTATGACTGTTCGATGTTCACTGTGTATGCAATCAGATATCAGGGACATCTCCTTGCGAAGGAATTG GCTGCTAAAGGATTACAGACCACAGTAATCACGGATTCTGCTGTTTTTGCCATGATTTCCAGAGTAAACATGGTATGAGA AAGTCCTGCCATTACTTTTTGGAATCAAGACTCATGCTGAATTTAAATCTGATTTTAACTTACCATTATATAGGTTATAG TTGGAGCTCATGCTGTCATGGCTAATGGTGGTATTGTTGCCCCAGTTGGCTTAAACATGGTTGCCCTGGCAGCTCAGAGG CATGCTGTTCCTTTTGTTGTTCTCGCAGGGAGTCACAAGGTGAATTGTTAATTTTAATCTTTATCTTTCCATCTATCATG TTTTACGAATCAAGAATTATTGTGTCTTTTGTTATAACCCCATAATTTATATTCTATTCTGTTAAAATATGGAAATAGGA TATTAGTTTACAGTCAAATCTGCAGGAGGCAAAGAATTCCATATTTTTCTCCGCGCATTTAGAATTGAAAATTTAGTCTT GAGTGATTGAATAGAAGAGTACAGATTTAAGTCTGAATACCAAAAATCAAAATAATTTTTAAGTCAATATGTTGTTTTTA ATTTGTCTTGCTGAGTTTTAATAGTGGGTCGCCAAACAGTTTTTTAGTTGAAAATTAAATTTTGGGCATAAAGTTAGGTT CTGAATTTAATTCAAATGTCATTTACATGGATATGCTTCTAGTTTTAACTGATGTTTTCTTTTTTTAAAATAAAAGTAGC AATGGGGAGTGAGCATAGAGAGGCTTAATTAGTTATGAAAGGCCAACCCTAAATGGGTGCTGCAAATATTTTGGTTCTTG TTTAGGCTATTTAGAAAATTATTATGCATTAAAAGTGTGAAAAGGAACTAGAGACAAATGATTTGATTGACTTTGGACTG TACAATAACATCAGTTATATTTGTCCCTTAAATTTTTGTTTATTGGGCTGCTAAGCTGGCCTACATCCTCAGAAAAAAGA ACTTATATTTGTGCCTTAATAATTGAATTATATTCGAAGTCCCTTTATGTATTTTGTTGTTCAAATTAGTTCTCATATCA AGTATTTCAAAGACTAATTTAATTGATGAAATACATATTTATGGATTAATAGGTAGACAACATGAACATGTTATTATTCA GGGACCTTTAACGTAATTTTTATTATGAAGAGACTAATATGAAAATGTTGTATTTTTAGGTATTGACTATTTACTCTATG TACAATTTTTTGAAATATAGACCTAAACTTAGTTTAAAAAATTGTTAACTAATTTTCTTATTACAATAAGTGGATTGTTA AACATGGTATAAGTTACATATATCCATATGAACCTTAATTATTCCAATTCTACAAGTTTTGGAAAAACACAAATTTATTT TCTGTTATAAAAAATTGTATTATCAGAAAAGATGCCTAATGCCAATAGATTTTCTAAATCTGCTTCACTATACTTGGTTG CAAACAGTATATACTATATAGCTGATCTCTAAGGAGTTTAAGTCTAGATATTTCGAACTGTTTAAATTGGTTAATACTCC TGCCCAATGATTGGATTTGTAAAGACTGGAAATTTGGAGTTGAACAATATTTTGTATGATGACAATGAGCTAGCTGCTTC TTAGTTATTGATTCACTTAAGACGTGTCCAGCTTATGATAATATTTAATAATATATAATACCCCCAGGTTTTCTATTAGT TATTAGTAAGGAAACTTTGGTGCCTTTTGGAATTATATTGTGATCTAGTTCATCATTTCAGTTGCCAACTGTTTGGCTTT TGTTAAATGTTGCTTTATCTTATGGACAGTTGTGCCCTTTGTATCCGCACAATCCTGAAGTGCTATTGAATGAGCTGCGA TCACCATCTGAGCTACTTGACTTTGGGGATTTCTCAGATTGCTTGGATTCTGCAAGCGGCGCTGGTTCGCTTCATGTCGT TAATCCAACATTTGATTATGTTCCACCAAAACTTGTCAGTCTATTCATCACAGACAAGTGAGTTGAACTTAAATTGATCG AGAAAATCTAATCTGTTTCATTTTATGCATTGACTTTTGAATATGTGTACTAATTGGTTTCTTTTATCCATTTTCTGTTC TGAAAATTATTTCTTGTCAGGGGAGGGCATAACCCATCATATATGTACCGGCTCATAGCAGATTACTACTCATCTGATGA TTTGGTGGTGAAACAAAGACGTGCTACAGGGAGTTGA
CDS sequence (LotjaGi3g1v0112200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGGATGTTCATGTTCTTGTTAACGATTTTGTCAATCAGCTCAAAAAGCGTAAAATTGAAGGTTCACAGGCCACAGC AAAGCAGACAGCAGAGTTGCTTCGGTCTGTGATTTCGCAGCAGCGGTTGGCGCAGACGAACCAGGCTACGGCTCTAATTA ATGCAGTAAGGGCTGTGGGGGAGAAGCTTATTGCTGCTAATCCTGTTGCTGCAATAGCTGGTTTGGGGCTATCAGGTGTA AGTGATGATGAAGATGATGTGGAGCGAGGTGATCATCCTGTTTTATCTGCTGCTGCTGTTGCAGCTGCGGCAAGAAGTAC CTTGCGTCCACCATCATTGCAAACTCTGCTAGAGGATATGCCTGAAACAGCCGCTATTCCACACACATCTTCCTCAGGGG GTGATTCGGAAGGGAAAAGTAGATCTGTTGATAAAAGTTCAAGAGGTCGGAAGTTGAAGCATGATGTCATTGAAGCCGTT AATGAACTTATTCAAGACATTTCCAGTTGCTATGAGCAAATAGCTGAGCAAGCAGTAGAGCACATTCATCAGAATGAGGT AATATTGACACTAGGCAGTTCAAAGACAGTGTTGGAATTTCTTTATGCTGCAAAGGAAAAAAAGAGATCGTTTAAGGTCT TTGTTGCTGAAGGTGCTCCAAGATATCAGGGACATCTCCTTGCGAAGGAATTGGCTGCTAAAGGATTACAGACCACAGTA ATCACGGATTCTGCTGTTTTTGCCATGATTTCCAGAGTAAACATGGTTATAGTTGGAGCTCATGCTGTCATGGCTAATGG TGGTATTGTTGCCCCAGTTGGCTTAAACATGGTTGCCCTGGCAGCTCAGAGGCATGCTGTTCCTTTTGTTGTTCTCGCAG GGAGTCACAAGTTGTGCCCTTTGTATCCGCACAATCCTGAAGTGCTATTGAATGAGCTGCGATCACCATCTGAGCTACTT GACTTTGGGGATTTCTCAGATTGCTTGGATTCTGCAAGCGGCGCTGGTTCGCTTCATGTCGTTAATCCAACATTTGATTA TGTTCCACCAAAACTTGTCAGTCTATTCATCACAGACAAGGGAGGGCATAACCCATCATATATGTACCGGCTCATAGCAG ATTACTACTCATCTGATGATTTGGTGGTGAAACAAAGACGTGCTACAGGGAGTTGA
Protein sequence (LotjaGi3g1v0112200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPDVHVLVNDFVNQLKKRKIEGSQATAKQTAELLRSVISQQRLAQTNQATALINAVRAVGEKLIAANPVAAIAGLGLSGV SDDEDDVERGDHPVLSAAAVAAAARSTLRPPSLQTLLEDMPETAAIPHTSSSGGDSEGKSRSVDKSSRGRKLKHDVIEAV NELIQDISSCYEQIAEQAVEHIHQNEVILTLGSSKTVLEFLYAAKEKKRSFKVFVAEGAPRYQGHLLAKELAAKGLQTTV ITDSAVFAMISRVNMVIVGAHAVMANGGIVAPVGLNMVALAAQRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELL DFGDFSDCLDSASGAGSLHVVNPTFDYVPPKLVSLFITDKGGHNPSYMYRLIADYYSSDDLVVKQRRATGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 71 | 71 | 1.3E-177 | – | |
| PANTHER | 1 | 71 | 71 | 1.3E-177 | – | |
| SUPERFAMILY | 5 | 380 | 376 | 2.19E-78 | ||
| Pfam | 19 | 365 | 347 | 8.8E-68 | ||
| PANTHER | 74 | 384 | 311 | 1.3E-177 | – | |
| PANTHER | 74 | 384 | 311 | 1.3E-177 | – | |
| MobiDBLite | 125 | 149 | 25 | - | – | |
| Gene3D | 177 | 376 | 200 | 2.8E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. |
Expression pattern of LotjaGi3g1v0112200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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