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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0113000 |
| Transcript ID | LotjaGi3g1v0113000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ERD (Early-responsive to dehydration stress) family protein; TAIR: AT3G54510.1 Early-responsive to dehydration stress protein (ERD4); Swiss-Prot: sp|F4JCY2|CSCL8_ARATH CSC1-like protein At3g54510; TrEMBL-Plants: tr|A0A1J7IE54|A0A1J7IE54_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0113000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13913793..13918825) extracted from Lotus japonicus Gifu genome v1.2.
GTGATTTTCTAACAGGCTTTGGGTACATTTTGCATGCTTGTGTTTCCTATCTTTATACGGGATGTACCTGCTGTATAAGG TGAAGTTCTCAGTTTGTCATATATTAGCATTTTTCATGAAAAAAAATGTCTTGCAAATCTTATTTACATTTTTCTAACAA TTTTGCTGACATAGATGTGCTTGTGACTTTAGAGTATTGGAATAGCTGTGTTAAATTTAAATTTATTATTTATGTTATTA TTTATACTAATGTTTTAATGCAAATTTCATCTCCAGGAATATGAAGAAATTTTGATTCTAAGGATTCAGCAACTTCAAAA TTTAAGGAATAGACCTGATCAATTTACTATTATAGTTCGGGAAATTCCAGTATGCATTGAACATAAGGCTCTCGACTGTT GTGTTGATCATTTCTTCAGTAAATACTATCCAAACACTTTCTATTCCTATCAAATGGTGTATGGCACTGAAGATCTTGAG GTGTTAGTGGTAAGATATGCCCTATTACAATTTACAATTTAAAATTCTCACTCATGGTGTTTATGCTGCATAATGGAAAT TTGTCATTGGTTTTCTGCAAGCTAATCTATAACATTAGTGATGATTTTGTTTACGATATTTGTTTGAGATGATCTTATAT CCCAACTCAGTATTCTATAAATATAATTCATGAGACTTTGTTTTGGATAATAAAGATTGCTTTACTGGTTGTATCTGAGT TGAAAATTTCAAGAATTTTTTAAGTGACAATCCCAACTCCTTTTTGAAATAACATTGTACCCCAAAATATGCCTATGTGC ATTGGAAGGGAAAGAGTGAGTTCAGAGTCCTATATAGTTAAGAATGAGCTAGATGAAAATAATATAAGAGAGAAAGCCCA AATGCCCAATCTTTAAGGTTTTGGGTGAAGATTTGGTGTGAGGTTCACTTTGTAGCTCACTGTTTTGGCTCATTGGTGCA GCCCACGCCCCACAACTTTATGGGCTCTCGCTGTCTCCCCGACAAGTGATATCAGAGTCAATGGTTTGGCTTTTATGTAT TTGGAGTTGACTCACAATTGGGGGTAGATTGGTAGAGAATTGAAGTGAGCTTTTGAGGAGTGCATATTGGTAAAGAGTGA CCTAGATGAAGATCTAATAGAGAACAGACCCATATACCCAATGCCTTAAGTTTTGGGTGAAGATGTAGTGGCACGTTCAC TTTGCAGCTTGCTGCTTTGATCCATTGGTGTAGGTCTCCCACTTTATGGGCTCCCCAGTGTCCTCAACAAGATATATTTA TACAGTGTAAAGTGGAGTAATTGTCCATAAGTACATACTCTTTTAAATTTGATAGAGCATTTCATTGGAGTAATGGAAAA AAATTTCATGCTTTTATTCAGTCATTGAAGAAAAACCAAGTATTTTGCATTTGTTAGAGCATCAAGGAAGATAAAATTAG GTTGAGTTTCTATAATGGTAATGGATCTTCTCACAAATGTTGTTATATGTAGAACCAGACAAAGTCTCTTGCAAGAAAAA TAGGAGACTTGAGAGAGACTCCCACGGCCAAGAAACGTAAGAATAAGTTGTCACTCTTGGATTGGTCACAACAAGAGACT TCAAAAGTAGCTTTGCTTGAGGAAAAGTTTCACGCACTTTGTCACAAGATTCACCAGTTACAGTGCAAAGATATGCTCAA GAAAAAGGTAAACGTTGAATGTTTAATCATTGCTTGAATTCTTTTAGGAGTAGGTTTCTCATGTAAAAGCACATCCATCA GATAGTGCTAATATGCTTGTGAGTTTTCAACTCCTGTTCTGGTAATGTAAAATAGAACTTCTTTTTTGTCTATATGAAAA GTTAGATGAGTTACAAGTTATAGTTTTCTCTTAATTTTTAATTGTCTTGAATAAAGTTTATTTTCTCTGTTTTAAGATGC ATCTTGATTGCTCAGTGCTTGTAATCAATAATGGAAAGTCATTACTTATCTGAAATGGTGAATGAGTTTATCTGTAGGTA TGAAAAAGTACATGTATCTCTATGAAGGAATGATGCTTTTTATTTAAAAATAATAGATTATTTAATCAAGCATTCCTTTC TCCCTTTAGAAAAGCATTCAGAAAATAGAACTTGTCTTATGTATTAGGAGTTGCCTGTTGCTTTTGTAACATTCAAGTCC CGTTCGGGTGCTGCAGTAGCAGCTCAGTTGCAACAGCAGTCACATCCACTTCTTTGGATCACTGAACTTGCCCCAGAACC AAGGGATGTTTCATGGAGAAATATGAAAGTATCCTACAGACTAGTGCCACTTTATAAACTTGGTGTTCTCATTGCAGCAT CACTGCTTACAGTTTTCTTTGTCATTCCTGTTACTGCTGTTCAAGGAATAGCCAAATATGAGAAACTGAAGAAATGGTTT CCTCCAGCCATGGCCATACAGTTGATGTAAGATTCTGACACCAGTGCCTTTTGATAATTGACCTTTTGAAAATATTTGCT CAGACTTTAACTCCCTTTTGGTTAAAAATCAAACTCTTGCATACATTTTGTTATTTTGTAGTTAATCAAATTCTTGGGAA GTTTACTGCTGGTATGACTGTAGTAATTCCCTAATGAATTGGCAAGATATATAGTGAAGATTGCTTTATATGTCACATGC ATTCTCTCTCACCAATACATCACAGTAGGAATCTTTAATTGGGCTCCATTTAGCTTATATTGATGCCAGCATATCATTAA GATAAGATAACTAAGAAAAATCACTTAAACATCTCCTTCTCTCTCTTTTTCTAGTGCATCAATATAGGTATTCAATTACT TGCCTTGCATTTCTGCTTCGGATTTCTTCTTTCACAGGTTATCTCATGATTTGTCTGGCCAAATAAATAGAAATATCACT ATCAATAAGAGGAAGCATATTTAGACAGGCAAAATACTTTGACAGAATGAGTTGACATTTTAAATGATTATTGGATGGAA ATATCCCCATCACTTCTATTTATCTAACAAGCATCTGTCAATCCTGACAATTCTAGATGAACTTTTTAATGTTTTCCATC TGTGTTGCATTTTTCTATGTAAAATTATTTAAAAGGAAATTCCTGAACATTCAGAATGAATTAAAATAAAGGTAAATTAG TGTGGATCATATGATAGAAAGAGAGATTTTGTCATTACAAAAATCGAAAAGATTTTGTGCAGAAGCATGCATCTAATTAT TTTCCTTTCACATCTTATATTCTTGGTTATTCATTGATTAGTTCCTAATGTAGACGATAGAGTATTTGTTTCTTGATCTT TTTCTGACATAAAACATTCTTTAGACCAGGATTAAGCTCTATAGTGACAGGATACCTTCCAAGTGTTGTACTGAAAGGAT TTATATACGTTGTGCCATTTGCAATGTACGCTATGGCTAAAGTTGCGGGATGTATTGCAAGAAGTAAGGAGGAGATCAAG GCTTGCAACATGGTTTTCTACTTTCTGATTGGAAATGTATTCTTCTTGAGTGTTTTATCAGGATCCCTTCTTGATTTTAT TGAACAATTTATTAGCCATCCTAAAAATATTCCCAGTCATCTTGCCAGAGCGGTCTCTGCCCAAGTAAGTTTTTTCCATT TCTGTTGTTCATGACTTCATGTAATATTCTTTCAATTTGTGTCTTCATATCATTTCTTCCTTTCATAATGTATTTTGAAC AATTTGAAGCTTTAAAGCGGTTTCCATCAATGGCTGAGGCACACTTTCAATAATTATTTCATGTATCCTTTAATCAATTG GCCTACTATGCTAATTATTGAATTTTAAGTAGTCTGCTAATAAGTGGGACTTCTTCTGTACATTGTTCCAGGCAGATTTC TTTGTGACATACATCTTGACAGATGGTCTATCAGGGTTTTCTTTCGAAATTCTTCAGCCTGGCTTACTACTTTGGGATAT TCTAATGTCGTGTACTCCGGGATGTACACGAGAGAGAAGTCCTTATCTGTATTCATTGCCTTACTTCAGAATTATCCCTT TTGTCTCTCTCTCAGTGCTAATTGGGACAGTGTATGCAGTAGTAGCGCCATTGTTACTCCCATTTCTTATCATTTACTTC TGTCTTGGATATGTTGTCATGATTAACCAGGTGAGATCAGTATCTTTCAAACACTCATTTATCTGTTATTTGATATAATA TACAGAGACTTATGCGCACAAAAAGACATGCTTTGTAACAGATTCATCATTATATGATTCCATGTACGGTTATATTTTTC CGTGCTCATATAAAACAATTCATTTGTATAATAAAATTTTTCATGTTTCTTCACCCAATAACTTAAGCTTTTAGGATAGT TGGTTCATGTTACGTGCTAAATTAATCTATTTCCTCACAATAGTTGGTTCTCCAAGACACACAGACGCTCACAATGTTTC TTTTTCCTGTTTCTGTCTTCTATAAAGTGTTGGCTTAAGCAGTATAAAACTTGACTATGCAGATTCAAGACGTGTATGAA ACTACTTACGAAACATGTGGACAATATTGGCCGTACATTCATCACTACATTCTCCTTGCAATTATTCTCATGCAGATTAC CATGATTGGTTTATTTGGGCTGAAGGCAAAACCAGCTGCTTCTATATCAACCATTCCATTACTTATATTCACATTAATGT TTAATGAGTACTGCAAGATGCGTTTTCTCCCTTCCTTTCACCATTATTCTCTCAAGGTACACTAGACTGCGAACAATTTT ACCGAGGGATATATGTTATATATGGTATAGGATAATAATAATCTCTTGGTTCTGAATTAAGAGTCTTAAAATTTATCATT GCTTGTCTTAATGTTCACATGTGTTACCATTTATGTAGTAACTTGCTAGTTTTTACTGAAGTTGTTTTCCATTTTGTTGT TAGGATGCTGCTGAAAATGATGAACTTGATGAAAAGAGTGATCTCTTGGAGTTCCACTATGACAGTGCAATCAATGCTTA TTGTCCACCATGTTTACGGCCAGTGAATATTAGGGCACCAGAGTCCAGCTCCACACCATTAGTTTCTTCATGA
CDS sequence (LotjaGi3g1v0113000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACCTGCTGTATAAGGAATATGAAGAAATTTTGATTCTAAGGATTCAGCAACTTCAAAATTTAAGGAATAGACCTGA TCAATTTACTATTATAGTTCGGGAAATTCCAGTATGCATTGAACATAAGGCTCTCGACTGTTGTGTTGATCATTTCTTCA GTAAATACTATCCAAACACTTTCTATTCCTATCAAATGGTGTATGGCACTGAAGATCTTGAGGTGTTAGTGAACCAGACA AAGTCTCTTGCAAGAAAAATAGGAGACTTGAGAGAGACTCCCACGGCCAAGAAACGTAAGAATAAGTTGTCACTCTTGGA TTGGTCACAACAAGAGACTTCAAAAGTAGCTTTGCTTGAGGAAAAGTTTCACGCACTTTGTCACAAGATTCACCAGTTAC AGTGCAAAGATATGCTCAAGAAAAAGGAGTTGCCTGTTGCTTTTGTAACATTCAAGTCCCGTTCGGGTGCTGCAGTAGCA GCTCAGTTGCAACAGCAGTCACATCCACTTCTTTGGATCACTGAACTTGCCCCAGAACCAAGGGATGTTTCATGGAGAAA TATGAAAGTATCCTACAGACTAGTGCCACTTTATAAACTTGGTGTTCTCATTGCAGCATCACTGCTTACAGTTTTCTTTG TCATTCCTGTTACTGCTGTTCAAGGAATAGCCAAATATGAGAAACTGAAGAAATGGTTTCCTCCAGCCATGGCCATACAG TTGATACCAGGATTAAGCTCTATAGTGACAGGATACCTTCCAAGTGTTGTACTGAAAGGATTTATATACGTTGTGCCATT TGCAATGTACGCTATGGCTAAAGTTGCGGGATGTATTGCAAGAAGTAAGGAGGAGATCAAGGCTTGCAACATGGTTTTCT ACTTTCTGATTGGAAATGTATTCTTCTTGAGTGTTTTATCAGGATCCCTTCTTGATTTTATTGAACAATTTATTAGCCAT CCTAAAAATATTCCCAGTCATCTTGCCAGAGCGGTCTCTGCCCAAGCAGATTTCTTTGTGACATACATCTTGACAGATGG TCTATCAGGGTTTTCTTTCGAAATTCTTCAGCCTGGCTTACTACTTTGGGATATTCTAATGTCGTGTACTCCGGGATGTA CACGAGAGAGAAGTCCTTATCTGTATTCATTGCCTTACTTCAGAATTATCCCTTTTGTCTCTCTCTCAGTGCTAATTGGG ACAGTGTATGCAGTAGTAGCGCCATTGTTACTCCCATTTCTTATCATTTACTTCTGTCTTGGATATGTTGTCATGATTAA CCAGATTCAAGACGTGTATGAAACTACTTACGAAACATGTGGACAATATTGGCCGTACATTCATCACTACATTCTCCTTG CAATTATTCTCATGCAGATTACCATGATTGGTTTATTTGGGCTGAAGGCAAAACCAGCTGCTTCTATATCAACCATTCCA TTACTTATATTCACATTAATGTTTAATGAGTACTGCAAGATGCGTTTTCTCCCTTCCTTTCACCATTATTCTCTCAAGGA TGCTGCTGAAAATGATGAACTTGATGAAAAGAGTGATCTCTTGGAGTTCCACTATGACAGTGCAATCAATGCTTATTGTC CACCATGTTTACGGCCAGTGAATATTAGGGCACCAGAGTCCAGCTCCACACCATTAGTTTCTTCATGA
Protein sequence (LotjaGi3g1v0113000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLLYKEYEEILILRIQQLQNLRNRPDQFTIIVREIPVCIEHKALDCCVDHFFSKYYPNTFYSYQMVYGTEDLEVLVNQT KSLARKIGDLRETPTAKKRKNKLSLLDWSQQETSKVALLEEKFHALCHKIHQLQCKDMLKKKELPVAFVTFKSRSGAAVA AQLQQQSHPLLWITELAPEPRDVSWRNMKVSYRLVPLYKLGVLIAASLLTVFFVIPVTAVQGIAKYEKLKKWFPPAMAIQ LIPGLSSIVTGYLPSVVLKGFIYVVPFAMYAMAKVAGCIARSKEEIKACNMVFYFLIGNVFFLSVLSGSLLDFIEQFISH PKNIPSHLARAVSAQADFFVTYILTDGLSGFSFEILQPGLLLWDILMSCTPGCTRERSPYLYSLPYFRIIPFVSLSVLIG TVYAVVAPLLLPFLIIYFCLGYVVMINQIQDVYETTYETCGQYWPYIHHYILLAIILMQITMIGLFGLKAKPAASISTIP LLIFTLMFNEYCKMRFLPSFHHYSLKDAAENDELDEKSDLLEFHYDSAINAYCPPCLRPVNIRAPESSSTPLVSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 196 | 196 | - | – | |
| PANTHER | 1 | 552 | 552 | 9.5E-293 | – | |
| PANTHER | 1 | 552 | 552 | 9.5E-293 | – | |
| Pfam | 28 | 187 | 160 | 1.5E-26 | ||
| Phobius | 197 | 220 | 24 | - | – | |
| Pfam | 199 | 466 | 268 | 2.0E-72 | ||
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 221 | 231 | 11 | - | – | |
| Phobius | 232 | 254 | 23 | - | – | |
| TMHMM | 249 | 271 | 23 | - | – | |
| Phobius | 255 | 259 | 5 | - | – | |
| Phobius | 260 | 280 | 21 | - | – | |
| Phobius | 281 | 291 | 11 | - | – | |
| Phobius | 292 | 311 | 20 | - | – | |
| TMHMM | 292 | 314 | 23 | - | – | |
| Phobius | 312 | 354 | 43 | - | – | |
| Phobius | 355 | 374 | 20 | - | – | |
| Phobius | 375 | 385 | 11 | - | – | |
| Phobius | 386 | 404 | 19 | - | – | |
| TMHMM | 404 | 426 | 23 | - | – | |
| Phobius | 405 | 409 | 5 | - | – | |
| Phobius | 410 | 429 | 20 | - | – | |
| Phobius | 430 | 449 | 20 | - | – | |
| TMHMM | 446 | 468 | 23 | - | – | |
| Phobius | 450 | 468 | 19 | - | – | |
| Phobius | 469 | 473 | 5 | - | – | |
| TMHMM | 473 | 492 | 20 | - | – | |
| Phobius | 474 | 492 | 19 | - | – | |
| Phobius | 493 | 555 | 63 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0113000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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