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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0113500 |
| Transcript ID | LotjaGi3g1v0113500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT1G76390.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43; TrEMBL-Plants: tr|A0A151SYA5|A0A151SYA5_CAJCA U-box domain-containing protein 43; Found in the gene: LotjaGi3g1v0113500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13953599..13958125) extracted from Lotus japonicus Gifu genome v1.2.
CAGGAAACGAAAGTAAAAACAAATAGAAACATCACAGAGAGACACTGTGTGTGAGCTGCTTGTTCTGCAGGCTTTGACTT CGTCTCCCATCATTCATTTCACTCACTTGCTTGAAGCCACACAAGGGGAGCATGACGAATAAAGCAAAGAAACCACACCC CACCATTGTAAATTTAATGGGTCATAGCCGTCTGACACTGACACTCTTGACATCTTCTAGTTACTATATTCCAAATCTCA CAAGAATTCAACCCCATGTTTTTTCCTTCTGGTTCAAGCCAATAAGAGGAACAAGAATCTGGGTAGTGTTATTCTTTTGT TATTTGGAATTTGGTATCTCAAAAGTTCTCAACTTTTCAAAATGAGGGTCTAACTCTAAGGTGGAAAAAAAAGTCAATTT CTTTGGCACTATACTATTTCCTCAAGTCATCCTTGCATTTTCTCAGCAGGTTCAATTCAATTTCAACCTCATAATTTCCT TTTTTCTGTGATTTAATAATTTTCTCTGTTTGATTTTTCTTCTCTATAGTATAGGCTATTTATTTGTATGGTTTTCTACT TATTTATTTCTGTGTTAATTTCATGTTAGCCTTTTTGGTTTAGGTTCCTTTCCTTTTTAACTGATTGCTGATTCTTCTTC TTTTTTTGTGCACAATAAAGTTTTGTTATACAAGATGGAAAAAGTGGAAAAGAGGGAGTTTTCTGAATTGCTGTCTGAGC TAATAGTTTTGGCTGATGAGGTTGCTTCTTCTGCTAAGAACTCTGAAATTGAGGTTGATGTTTTTGCTGAATTTGCCATG TTTGTTGAGAAATTCCCACCAATTTTGGATGACTTGAGGGGCAAAAGCACAGTCTTGGACAAGCCATCGATTCGAAAATC GTTGGAATATCTTGAGAATGAGCTAAGGCGGGCTAAAGATTTAACAAAAAGTTCCAATTTGAGACAGCCCGTCAAGCAAA TTGAGGATATAACACACGATATTGGTCGGTCGCTGGGGCTTCTACTTGTAGCCAGCCATGAAGTGTCAATGGATTTTAGA GAAAAGATTGGTATGTTGCAAAGACAGTTGATGAATGCAAGATTTTATGGCAATTCGAGCATAACTTCAAGTCCGAAATC AGAGCTTTTCAGCATTGACTTGAAGGGGAATTGGGAAATAGAAGAGGAAATAGTTAATGTTTCTATTCATGATGTTGTTT TGCAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTGCATTTTCAAGACTGAAGGAGTTCTTGAGGAGTGAAAAGCTG GATGGAGGTTTGATTAACGAGAAAGCAACTATTGCCATTCTTTTCAAACGTCTAGGTTCATGTAAAGCACACAACAGGCT TGCCATCATTCGATTGCTAAGAAGTATTGCTTTTGGAAATGACGCACAAAAGGTAAAATCCTGAAAATTGGTGATGTTTT TTTTGTATATGTTGATCTAAAATCATTGCACCTTTAGTTTTTTTATCTTACTTTATGAAGTGCTGCACTGCAGGAAAAGA TGGCAGATATTGAGTTTTTGTCAGCATTGGTGAAGTCTCTGACCAGAGATTCAGAAGAGAGGATGGAAGCTGTGGGGCTG TTGCTGGACCTCTCTGACCTTCCAGCAGTTCGAAGACGGATTGGAAGAATTCAAGGGTGCATTGTTATGTTAGTTGCCAT CCTTACTGGGGATGACCATGTTGCTTCACATGACGCTGCAAAGTTGTTGGATATGTTGTCTAGTAATACTCAAAACGCTC TTCATATGGCTGAGGCTGGCTACTTTGCGCCACTAGTGCAGTATTTGAAGGAAGGTAATACAGGACTTTCCTTAACTGAT ACATCTCTTTCCTTCTCTATTGTTTATCCGAACCATAGGTTCACAATAGCACAAGCAATTTCAGCAGTATAGATCATTGA ATCCATTATATTTATATAAACGTAAGTGGAAGAAGATATAAATTGGTTGAGTTTGTAGAAAATAGAATAGAAACAGCAAA GTTAGCCTTTGGTTTTCAGTTTTCACAGAAGCTGTGAAGTATCTAATGAACTTTTTGACATTAATGGGAGCATGTAAATA TTGAGTATATCTCTGAGCTTCTGACATAGTTGGCTAATGATAGATTAAAATCATTATTTGTTTATTAAGGAGATAATAAT CGTGATAGGACATACTCACTTGATTACTGTACAAATATAGCAGAACTTCAATGGTCTGCAATCCTTCTTATGCCAAAAGG TGGCAACACTATCAAATGACTAGACACCCCTCCTTCTCAACCTCTCTTTCCATTTATAGGCAACATGTCATCTTTCCTCA AACGATCTCTGCCCAACCAACAAAATAACTAACACCTTAACTAACAGTATGCTAACAGTTATGTATTACTAATAGACACT AACAATTATACTAAGGGGGTTACCTATCAGATTGTGCGTTTAAGGACCTGAGTGGACACTTTTTGTAATGGGTGTGAATT GAAGAAGAGTGTTGTGTGGGGACGAAAAATATATTTTAACTCAATATGTAGATGTGTTGACAGTCTTCGTCTTTGATTTG TTACTAGTTATATGCATCGTTTCTAATTCTGACAATGATCAGAACTGAGTCAAAAAAAATTACATCCCTTTTACCTGAAA ATTTCAAATTATGTTATTTCAGGGTCTGACATGAACAAGATCCTAATGGCGACAGCACTTTCGCGATTGGAGCTCACTGA CCACAGCAAACTTGCCCTTGGAGAAGATGGGGCGATTGAGCCCCTTGTCAAAATGTTTAGTACTGGGAAACTTGAGTCCA AGTTATCAGCTCTAAATGCACTACAAAATCTGTCGAGCTTGACAGAAAATGTGCAACGGTTGATCAGATCTGGAATCACG GGATCTCTGCTACAACTTCTTTTCTGTGTGACATCTGTGCTCATGACTCTGAGGGAGCCTGTATCAGCTATTCTTGCAAG GATTGCTCAATCAGAATCCATCCTTGTTAATGAAGACGTGGCTCAACAGATGTTTTCACTTTTGAATCTTTCGAGCCCGG TAATTCAAGGCCATCTACTAGAAGCTCTAAATAGCATGGCTTCACATCCCGGTGCATCCAAATTGAGAAGAAAAATGAAG GAAAAAGGTGCACTTCAGTTACTCTTACCCTTTCTGAAGGAAAATAACACCCAAATCCGGAGCAAGGTCTTGCAGTTGCT GTACACACTCTCTAAAGATCTAACCGATGAATTGACCGAATATCTCGATGAAACTCATCTTTTCAACATTGTTAATATTG TCTCGTCATCGACATCCGAGAGTGAAAAAGCTTCTGCTGTTGGCATACTCAATAACCTTCCTGCTAGTGATAGAAAAGTG ACAGATATACTGAAGAGGGAAAATTTGCTACCTATTTTGATATCCATCGCGTATTCTAACGCTGGAAGTAATTCTCCCAC AACAACTAGTTTAACTGAGAGTGTTGCAGGTGTTTTACTCCGCTTCACAAGTTCCTTTGATAAGAAACTACAACTTCTTT CAGCCGAACTCGGGGTGATTCCTTTGCTTGTAAAATTACTCTCAAGCGGTTCACCAATCACGAAATCAAGGGCTGCAAAA TCTCTAGCACAACTATCACAGAATTCTCTGTCTCTAAGGAAATCTCGAAAGTCGAGATGGATATGTGTTTCCCCCTCAGT GAATGCATATTGTGAAGTTCATGATGGCTATTGCTTTGTCAATAGAACATTTTGTTTAGTCAAGGCAGGTGCTGTTTCTC CACTCATCCAAATACTGGAAGATAAGGAGAGAGAAGCAGTTGAAGCTGCTCTGAGTGCCCTTTCAACTCTTCTGCAAGAT GAAATCTGGGAAGGTGGTGTCAATTCCATTGCCAATTTTTCAGGTGTGCAGGCTATTATAAAAAGTCTAGAAGTTGGGGA TGCAAAGGTTCAAGAAAAAGCACTGTGGATGCTGGAGAGAATATTCAGGGTTGAAGAACATAGAGTGAAATATGGAGAAT CTGCTCAGATGGTTCTTATTGATTTGGCCAAGAAGAGCAATGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCA GAGCTGGAGCTCTTGCAAGCTCAATCAAGTTACTTTTGAAACAAGCCATTCTCTATGAGCAATATTGTGGCAGTGATTTT GTTTTGTGCTCCATTCATTTATAATATTTCGGTGTACATGCTTGTATGTTATCTTATTTTGGATGTGTTACTCTGCCATT CTGGTGTATGTAATTTATTAGAATGGAAGGTGGTAAAATATCAATTTGGAATCACATAAAGTAAAATAAGTTTTATTTTG AAGAGATTGATTTTGGAAGCATTATATCCATTTCGGCAATTGATAGAGATATTAGAGAGGAATAAAAAAAACGTGTCTGT TTGTTGCATTATTTTGACAGAATTCATGTTTTTATCTTAAATAGGCAATAGACAGGTAAGAGGTTAATTAAGTGAAAAGG AGAAGGAGAAGGAACATATGGATAAAGAAAGAAAAAGTTCAAAAAGG
CDS sequence (LotjaGi3g1v0113500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAAGTGGAAAAGAGGGAGTTTTCTGAATTGCTGTCTGAGCTAATAGTTTTGGCTGATGAGGTTGCTTCTTCTGC TAAGAACTCTGAAATTGAGGTTGATGTTTTTGCTGAATTTGCCATGTTTGTTGAGAAATTCCCACCAATTTTGGATGACT TGAGGGGCAAAAGCACAGTCTTGGACAAGCCATCGATTCGAAAATCGTTGGAATATCTTGAGAATGAGCTAAGGCGGGCT AAAGATTTAACAAAAAGTTCCAATTTGAGACAGCCCGTCAAGCAAATTGAGGATATAACACACGATATTGGTCGGTCGCT GGGGCTTCTACTTGTAGCCAGCCATGAAGTGTCAATGGATTTTAGAGAAAAGATTGGTATGTTGCAAAGACAGTTGATGA ATGCAAGATTTTATGGCAATTCGAGCATAACTTCAAGTCCGAAATCAGAGCTTTTCAGCATTGACTTGAAGGGGAATTGG GAAATAGAAGAGGAAATAGTTAATGTTTCTATTCATGATGTTGTTTTGCAACTTAAGAATGGTAATGATGAAGAATTTGC AGTTGCATTTTCAAGACTGAAGGAGTTCTTGAGGAGTGAAAAGCTGGATGGAGGTTTGATTAACGAGAAAGCAACTATTG CCATTCTTTTCAAACGTCTAGGTTCATGTAAAGCACACAACAGGCTTGCCATCATTCGATTGCTAAGAAGTATTGCTTTT GGAAATGACGCACAAAAGGAAAAGATGGCAGATATTGAGTTTTTGTCAGCATTGGTGAAGTCTCTGACCAGAGATTCAGA AGAGAGGATGGAAGCTGTGGGGCTGTTGCTGGACCTCTCTGACCTTCCAGCAGTTCGAAGACGGATTGGAAGAATTCAAG GGTGCATTGTTATGTTAGTTGCCATCCTTACTGGGGATGACCATGTTGCTTCACATGACGCTGCAAAGTTGTTGGATATG TTGTCTAGTAATACTCAAAACGCTCTTCATATGGCTGAGGCTGGCTACTTTGCGCCACTAGTGCAGTATTTGAAGGAAGG GTCTGACATGAACAAGATCCTAATGGCGACAGCACTTTCGCGATTGGAGCTCACTGACCACAGCAAACTTGCCCTTGGAG AAGATGGGGCGATTGAGCCCCTTGTCAAAATGTTTAGTACTGGGAAACTTGAGTCCAAGTTATCAGCTCTAAATGCACTA CAAAATCTGTCGAGCTTGACAGAAAATGTGCAACGGTTGATCAGATCTGGAATCACGGGATCTCTGCTACAACTTCTTTT CTGTGTGACATCTGTGCTCATGACTCTGAGGGAGCCTGTATCAGCTATTCTTGCAAGGATTGCTCAATCAGAATCCATCC TTGTTAATGAAGACGTGGCTCAACAGATGTTTTCACTTTTGAATCTTTCGAGCCCGGTAATTCAAGGCCATCTACTAGAA GCTCTAAATAGCATGGCTTCACATCCCGGTGCATCCAAATTGAGAAGAAAAATGAAGGAAAAAGGTGCACTTCAGTTACT CTTACCCTTTCTGAAGGAAAATAACACCCAAATCCGGAGCAAGGTCTTGCAGTTGCTGTACACACTCTCTAAAGATCTAA CCGATGAATTGACCGAATATCTCGATGAAACTCATCTTTTCAACATTGTTAATATTGTCTCGTCATCGACATCCGAGAGT GAAAAAGCTTCTGCTGTTGGCATACTCAATAACCTTCCTGCTAGTGATAGAAAAGTGACAGATATACTGAAGAGGGAAAA TTTGCTACCTATTTTGATATCCATCGCGTATTCTAACGCTGGAAGTAATTCTCCCACAACAACTAGTTTAACTGAGAGTG TTGCAGGTGTTTTACTCCGCTTCACAAGTTCCTTTGATAAGAAACTACAACTTCTTTCAGCCGAACTCGGGGTGATTCCT TTGCTTGTAAAATTACTCTCAAGCGGTTCACCAATCACGAAATCAAGGGCTGCAAAATCTCTAGCACAACTATCACAGAA TTCTCTGTCTCTAAGGAAATCTCGAAAGTCGAGATGGATATGTGTTTCCCCCTCAGTGAATGCATATTGTGAAGTTCATG ATGGCTATTGCTTTGTCAATAGAACATTTTGTTTAGTCAAGGCAGGTGCTGTTTCTCCACTCATCCAAATACTGGAAGAT AAGGAGAGAGAAGCAGTTGAAGCTGCTCTGAGTGCCCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGTGTCAA TTCCATTGCCAATTTTTCAGGTGTGCAGGCTATTATAAAAAGTCTAGAAGTTGGGGATGCAAAGGTTCAAGAAAAAGCAC TGTGGATGCTGGAGAGAATATTCAGGGTTGAAGAACATAGAGTGAAATATGGAGAATCTGCTCAGATGGTTCTTATTGAT TTGGCCAAGAAGAGCAATGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCAGAGCTGGAGCTCTTGCAAGCTCA ATCAAGTTACTTTTGA
Protein sequence (LotjaGi3g1v0113500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKVEKREFSELLSELIVLADEVASSAKNSEIEVDVFAEFAMFVEKFPPILDDLRGKSTVLDKPSIRKSLEYLENELRRA KDLTKSSNLRQPVKQIEDITHDIGRSLGLLLVASHEVSMDFREKIGMLQRQLMNARFYGNSSITSSPKSELFSIDLKGNW EIEEEIVNVSIHDVVLQLKNGNDEEFAVAFSRLKEFLRSEKLDGGLINEKATIAILFKRLGSCKAHNRLAIIRLLRSIAF GNDAQKEKMADIEFLSALVKSLTRDSEERMEAVGLLLDLSDLPAVRRRIGRIQGCIVMLVAILTGDDHVASHDAAKLLDM LSSNTQNALHMAEAGYFAPLVQYLKEGSDMNKILMATALSRLELTDHSKLALGEDGAIEPLVKMFSTGKLESKLSALNAL QNLSSLTENVQRLIRSGITGSLLQLLFCVTSVLMTLREPVSAILARIAQSESILVNEDVAQQMFSLLNLSSPVIQGHLLE ALNSMASHPGASKLRRKMKEKGALQLLLPFLKENNTQIRSKVLQLLYTLSKDLTDELTEYLDETHLFNIVNIVSSSTSES EKASAVGILNNLPASDRKVTDILKRENLLPILISIAYSNAGSNSPTTTSLTESVAGVLLRFTSSFDKKLQLLSAELGVIP LLVKLLSSGSPITKSRAAKSLAQLSQNSLSLRKSRKSRWICVSPSVNAYCEVHDGYCFVNRTFCLVKAGAVSPLIQILED KEREAVEAALSALSTLLQDEIWEGGVNSIANFSGVQAIIKSLEVGDAKVQEKALWMLERIFRVEEHRVKYGESAQMVLID LAKKSNDSRLKSTVAKVLAELELLQAQSSYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 831 | 831 | 0.0 | – | |
| PANTHER | 1 | 831 | 831 | 0.0 | – | |
| Gene3D | 169 | 304 | 136 | 3.0E-7 | ||
| SUPERFAMILY | 173 | 426 | 254 | 7.68E-24 | ||
| SMART | 242 | 281 | 40 | 200.0 | ||
| Gene3D | 314 | 678 | 365 | 2.8E-42 | ||
| SMART | 324 | 364 | 41 | 230.0 | ||
| SMART | 365 | 405 | 41 | 0.14 | ||
| SUPERFAMILY | 372 | 785 | 414 | 5.26E-41 | ||
| ProSiteProfiles | 376 | 418 | 43 | 9.327 | ||
| SMART | 491 | 531 | 41 | 14.0 | ||
| SMART | 576 | 623 | 48 | 230.0 | ||
| SMART | 626 | 666 | 41 | 52.0 | ||
| Gene3D | 696 | 829 | 134 | 8.1E-12 | ||
| SMART | 698 | 738 | 41 | 6.5 | ||
| SMART | 742 | 782 | 41 | 180.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0113500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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