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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0113600 |
| Transcript ID | LotjaGi3g1v0113600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U3 small nucleolar ribonucleoprotein IMP4; TAIR: AT1G63780.1 Ribosomal RNA processing Brix domain protein; Swiss-Prot: sp|Q0VD01|IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein IMP4; TrEMBL-Plants: tr|I1LLA9|I1LLA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0113600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13960014..13965801) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAAAGAAAAGTAGAAAACTACTTCAGGGTTTAGTCGATAAACCTTGAAACGCAGGGCGTGGTGCGTTTAAGTGTCTC AGTTTTCTCTTCTATCCCCCTTCCCAGTTCCCACTGCCACTCTTCATCTTTCTATCTATCAACACCCCTCGCACACACGC CGCCGGCAATCCACCACCACCGCCGCCGCGCCACCGTGCTCTGTCTTGTTATCAGTCTCCGTCAAGATGCTTCGTAGAAA CATCCGTTTGAGGAGAGAGTATCTATACAGAAAGAGTTTGGAAGGCAAAGAGCGCTTGCTCTACGAGAAGAAGCGGAAGA TCAGAGAAGCGCTTCAAGGTTCCTCCTTTTCCTCTTCCTTCATCTTGTTTCAACGTATTTGATAATGGGTTTTGCTTATT TTTTGAAAAAAATCATTGTTGTTTACTGTTTGTCTTTTGTGTTTTGGCAGAAGGGAAGGCCATTCCTACTGAGCTTAGAA ACGAGGAGGCTGCGCTTCGTCGCGAAATCGATCTCGAGGATGAGAACACAGCTGGTATCATGTTAAATCCTTTCCTGTTT TTTAGTCAATTTTGTGAAGTCTGTTTGTGCTGCTGATTGTGTGAACTTGACTATGATTTTAGGGTTTTAAGAATTTTAAT GTGTGTGGTTGCTTTTTCGGTTTTTCAATTTCTGCTTGGTCTTGAGCTTTTGTTTTAGAATGGTGGTATTTCATTCAAGA GAGTTATTTACTATGCAAACTGAATCCATTAGTTGTCTATGTCCAAAGATGTTGCACAATTATCTAATTGATAGAGGCCT CATACTTCTTTTTTTTGGGGGGGGGGGGGGGGTGGAGCTATATGCAGAATAAGGTTTTGGTATTAAACAAAATTACTTCC ATTAAATTGTATGGGGGTAAATAGAAAACCTACCACTTTTTTTGAAATTTAAGTCTATTTACTTTTAACTTAACATAGAT TTGGTATGCCAGAGGGCTTCGAAGTTTTGATTTTGATTATACATCTTTATCTTTTCTGAACCTTGTGACTAATGTACTTT GTATTTTCTCTCACTTAATTGTATCTTTCAATATGGGTTTTGTTGTGGTTTGTGAGCTTGTGATTTTTTACACTTGGTGC TCTGATGAATTCAGTCCCAAGAACACACATTGATGATGAGTATGCAAATGCTGCGGAGAAAGATCCTAAAATTTTGCTGA CCACATCCAGGGATCCAAGTGCTCCTCTTCAACAGTTTGTGAAGGTTTGATTTCTTTCACTATCTTGGACTTGGTGATGG TTTGAAATATTGTATTTAAGTTATACTTTGGTTTTGTTATTTTGTGCTTCACTGACAACTTATTGTTTTTCGTGATCTTC AATTATTTGTTTAGGAACTGAAATTTGTCTTTCCCAATGCTAATAGAATGAATCGTGGTGGTCAGGTTAGTACTTCCTGG TTTGCCATCCATTGTCTCATCTTCAGTATTTGTTTGTAACATGAAAATTTGATTATTTGATGGTTTATTCATTTTTATTT CTTAGATGAGAAAAGATGTTTTAATTAGAGATAATATCATAAATCGTAGTTCACAAGAGAATAGGATACCATCCTAAAAC TAAAATCTATCTAATTTCTCTGCATGTTAATTATGGAAGATCTCTTGAAACAACTATGAGCAGAGCACCAAAGTGACAAT GCTATATTATAGCACATGCATTATGTAAGGCCCCTTCATCTTACTGACGTGCTGCTCAAATAATCCCAGTGGATGTAGGC ATGTCCAAAGTGCCTACTCATAAAATGAACATTGCGACTAATTTTCCATGTCCTTGTTTCTGCCAAAACCTTTGACGCAG TATGTGAAAACACACCATAGTGAAATAACAATCCTAGTATCCACAAGACCACAACTCTAAGAATTTCAAAGTAGGCTCCC GACAACTTAGAAAAATATGGTCCTGTTTCCAAACTATGCCTGTACATAGTACATTCTGCATCAGAGTACAGAACTACGTG AGGTACTGAATATGCTTGGGGTAATGATATACACACGTCTTTTCCTTCTTAAAGAAGTTGATACAAATACGGTCAACAGC CAATATTGAAGATGTTGCATTAATAGCACCTAGACCACGATGTTCCATTATTCTAGTTTCTATCTCCTGTAAGAATTTTT CTAATATATTGTTCAACATGGAAACCCTGGTTATTTACATTCTTTGTTTTTCTTCTTCGAACATAAAATTTCTGAAATTT ACTTGTATGTAATCTGTGTGGAACAAGTGTTTTCCTTAACTTCGAAGTAGTTGCACTTATTAAGATACTTTTGTACAATA TAATATCATATCGACTTTTTTAGAGTTTCTATGAACAGGAAAAAAGTTTCCCTGAATTATTGATGTTTTTATCTGCAACT CAATCCTGTCTTATATGGTGCTGTTCAAATTGTTTAAAATATCTCTTCCTTATATATGTTTGATAGTAATGTATTTCTAG TGTGGTCCTAACTTTAGTAATTTGTAATCTTGAATACTAAGGGTGTGTTTGTTCCATCTGGCCGAACTATATTCCTTAAT TGTCCTACACATTGTTGATTGGTCAAAGTACTAAGTATAGCTCAAGTAATCATATTTATATTCTAGATCTAGACACCTTG GACCAAACAACTATAGTTGTATTAATTCTAATACTTCATGTTCTTTTCTTTGCTCAACTATTTGTATTCATGTATGTTCT CCTTTTTTTACAGGTTATCTCAGATATAATAGAAACTTGCCGATCTCACGACTATACTGATGTTATCCTGGTTCATGAAC ATCGTGGTGTGCCAGATGGTTTAATTGTTTGCCATCTACCATTTGGTCCAACTGCATATTTCGGATTACTCAATGTGGTA AGTGTCAGTCTTGCAGTGCTCCTTATATGGATTTTAGGGGGTTGTATGCTAATCTGTAGTTCCTTGTAGGTTACAAGGCA TGAAATTAAAGACAGGAAAGCCATGGGAACCATGCCTGAGGCTTATCCACATGTGATACTTGAAAATTTCTCAACTAAGG TATTCATAATTCAACATGAGCTTTACTATCTTAATACATACTAAAATTCGTTGGTAATGGTCTTTTCCTTTCATCACTAG ACCTTCTGATAACTTTGGTCTTTCAGTATAATTGGTTCACATCTTATTCAATAATGGGTAGGTTGTGGTTCAAAATGTTT TTTTTTTTAGTATTTAAGAACAAATTTACATAGATGAAAATTAATTGATATAGGTTGTATCTTGAATTCTTGATGTGATT AGAAAATGGCTAAAATGTTGAAAAAATTTAAATGGGAGTGGTTTAACCAGGAACCAGTCTCTTGGCTGGTCTGGTCTGGC TCTTGAAACGATAAGGATCTGAACTGATTATAGGATGGGAGAACTGGTTCCAAACCAATCAAGCATGCAAACCAGTTGCA GTTTGGAAAGTTAAACAGGTTCGAATCATATAGAAAGAAAGTAGAAGTAGCATCTGTGGAGGAAAAGATGTCACAATTGG ACCTACAATGGTTTGGCCAAGCGATAACAAGACTTGTAGAAGACCCAGTAAAAAGGTTGAATAGATAGAAGTAGAGATCA AGGAGAATTCTAAACAAAACCATGAAAACCAACTTTGATATAAATTACCTCTTTTAAGACTTGGTTGTTGTTTGATCCTT GTGGCTAATTTCACCTAGTGAGAAAATGCAATGCTATAGTTGTAATGCTCAAAATGTTGAGAGCAGGACTTCGATATAAA TTACCTCTCTTAAGACTTGATTTTTCAGAGAACTCACTGTTACTGTTTGATCCTTGTAGCTAATTTCATCTAGTGAGATA AATCATTGTTGTTGCTATAATGCTCAGAATGTGAGTGGGATTTTAGCACAGATCTGAGCTGAGAGGAGGCTGTCAACCTC ATGAGCACTATGTGTCATTAACATGGGTCTTTGAAATAAGAAATGGCATAACTGATATTCTGACATTAGGTCAATTTGGA AAATAAAAGCTGCTCTCTCACTAGGCTACTAGTGGTTAGAAAAATGCTAGCAACACTAACTTTAACACTCTTTTCAACTC TCATTGATTTGTTGAAATTCGTGTGGGGTCCCCACTTAAATGGGTCCCACTTCCGATTTAGTGAAACTCACGATGACGGA GAGTTGAAAAGAGTGTTAAAGTGAGTGTTGCTATCACTCCTCCTTGTGGTTTTTTATCAATAAAAGTTAAATCTGACAGT ACATCATGTTTCGTAGGAAAAAATGTTGAGAGTCCACCAAGAATCTTTCATGATAGTAGTATGAGATCAGAATCTGTTAA TAATTTTTTTGTCCATATTATCTGACGGTCTTTAAGAAAATATGCCTATGCAAACTCTATCACAGCACTTGTTTGCTGAC TGCTTGTCTTATTTTGTAATTCCCATTTGACTTAAAACAGTTAGGTGAAAGGACTGCCAACATTCTAAAGCACCTGTTTC CGGTGCCAAAACCAGACACTAAACGTATTGTCACTTTGGCCAACCAGTCCGACTATATCTCGTTCAGGTTGGTTAAATGT ATTCGGTATTGTGCATTTGGTATTCTTTACCATTATTTGTTGAGTTCTATTAAATTTCTCTGGTTAGGCTTCTCATTTGA AATTTTATTTTTGTTACATACAGGCATCATATATATGAAAAGCCCGGGGGTCCTAAATCTATAGAATTGAAGGAAATTGG TCCACGGTTCGAGTTGCGATTATATCAGGTTTGTGTTACAATTAAGCTAACTGTTGATTGTTTTGTTATTATGATGTTAT TAAGAAAAATGAGCTTGCATTTGGAAGGAAATAACCACATGCTTCTAAAATTAAGAAAAGCTCAACAATATCCTTTTACT TGAGGATATTGTTGCAAGTAGGATTTTAAGATTTTGCTTAAGAAGCCATATTTAGTGATTGAATTTTGCATGGATTTATG ATATGTCTCCTCTGTTCTCATCTTTATCAATATAAACTCAGACCGAATATATTCCTTGTATCACAACTCTTGACTGTTAA ACAACTCTGATTAGATCCTCATTTATTTACTTTTTGAAATTGTTGGCAGATAAAGTTAGGAACAGTGGATCAAGCTGAAG CTCAAACAGAATGGGTCATTAGACCTTTCATGAACACGTCTAAAAAGCGTAAATTTCTCAGTGATTGATGCAGACATAAC AATATTGTTATAGTGGGTGTTTTATACTGGACAGCCATATTATTAGAACTCTCTGAGCTCACATTTCACTCTGCCTTTTA AGGACATACTCAGTAGTTTAGGTGGAAAAAGAAGCTAAAGATTTTTATTGACATTTGTTTAACACTTTGGCGCTAGAAAA TTATGAGAATGGAAATTGAACTGTACTTCTTGCTTAGTTTTAGACGGAATTATTTGTAAGAATCTAATTTTTATACTTCT GTTAGGTCATTGATTTTTTTCTTTGGTCCAAGGTCCTTTATTGAGTTTGATATCATTTTAAAAGCAAGTTACATCTTATC TTGTTTTAACCTTTTTAGTTATTATTTTTTAACTTTTCTGAATGGTACTACTTTCTACGTATTTCTAAAAATTACATTAT CAATACTAATTTTTTAAAAATATATCTCCTAATTAATGAAGTACTTTTTCCTAAAAGAATGAACAGAAGTGTGTCCAAAT TGGGATGTAAACACACGAGGTCACGAGGTGTATGTGGTAGAGTTCATTTCAATATATCTTATAGCATACATAGTTATGCA AGTGTTTAGTCAAGTTTATTGTCATTAT
CDS sequence (LotjaGi3g1v0113600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCGTAGAAACATCCGTTTGAGGAGAGAGTATCTATACAGAAAGAGTTTGGAAGGCAAAGAGCGCTTGCTCTACGA GAAGAAGCGGAAGATCAGAGAAGCGCTTCAAGAAGGGAAGGCCATTCCTACTGAGCTTAGAAACGAGGAGGCTGCGCTTC GTCGCGAAATCGATCTCGAGGATGAGAACACAGCTGTCCCAAGAACACACATTGATGATGAGTATGCAAATGCTGCGGAG AAAGATCCTAAAATTTTGCTGACCACATCCAGGGATCCAAGTGCTCCTCTTCAACAGTTTGTGAAGGAACTGAAATTTGT CTTTCCCAATGCTAATAGAATGAATCGTGGTGGTCAGGTTATCTCAGATATAATAGAAACTTGCCGATCTCACGACTATA CTGATGTTATCCTGGTTCATGAACATCGTGGTGTGCCAGATGGTTTAATTGTTTGCCATCTACCATTTGGTCCAACTGCA TATTTCGGATTACTCAATGTGGTTACAAGGCATGAAATTAAAGACAGGAAAGCCATGGGAACCATGCCTGAGGCTTATCC ACATGTGATACTTGAAAATTTCTCAACTAAGTTAGGTGAAAGGACTGCCAACATTCTAAAGCACCTGTTTCCGGTGCCAA AACCAGACACTAAACGTATTGTCACTTTGGCCAACCAGTCCGACTATATCTCGTTCAGGCATCATATATATGAAAAGCCC GGGGGTCCTAAATCTATAGAATTGAAGGAAATTGGTCCACGGTTCGAGTTGCGATTATATCAGATAAAGTTAGGAACAGT GGATCAAGCTGAAGCTCAAACAGAATGGGTCATTAGACCTTTCATGAACACGTCTAAAAAGCGTAAATTTCTCAGTGATT GA
Protein sequence (LotjaGi3g1v0113600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALQEGKAIPTELRNEEAALRREIDLEDENTAVPRTHIDDEYANAAE KDPKILLTTSRDPSAPLQQFVKELKFVFPNANRMNRGGQVISDIIETCRSHDYTDVILVHEHRGVPDGLIVCHLPFGPTA YFGLLNVVTRHEIKDRKAMGTMPEAYPHVILENFSTKLGERTANILKHLFPVPKPDTKRIVTLANQSDYISFRHHIYEKP GGPKSIELKEIGPRFELRLYQIKLGTVDQAEAQTEWVIRPFMNTSKKRKFLSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 290 | 290 | 2.7E-150 | – | |
| PANTHER | 1 | 290 | 290 | 2.7E-150 | – | |
| Coils | 18 | 38 | 21 | - | – | |
| SUPERFAMILY | 82 | 265 | 184 | 1.37E-60 | – | |
| Gene3D | 83 | 259 | 177 | 4.4E-25 | – | |
| ProSiteProfiles | 83 | 268 | 186 | 44.037 | ||
| SMART | 86 | 262 | 177 | 8.8E-62 | ||
| Pfam | 90 | 260 | 171 | 1.8E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0113600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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