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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0113700 |
| Transcript ID | LotjaGi3g1v0113700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nascent polypeptide-associated complex subunit beta; TAIR: AT1G17880.1 basic transcription factor 3; Swiss-Prot: sp|Q9SMW7|BTF3_ARATH Basic transcription factor 3; TrEMBL-Plants: tr|I3S419|I3S419_LOTJA Nascent polypeptide-associated complex subunit beta; Found in the gene: LotjaGi3g1v0113700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13969146..13973015) extracted from Lotus japonicus Gifu genome v1.2.
AAAAACTATTGCCATGTGGGATTTTGATTAGAGGACCCATTTGTTTCTTCACAAAAAAAAAATATTTTAGGGTTTTTGCA GTGTCTTTTATACTCTTTTTACATATATAGGGAGTCCTTATCTACTTGTGTCTCTTTGTTCTTACATTTCGCAATCTGTT CCGAACCACACAGGCTTCAACAAAGGTACCGATTTTCCACTTCACCGCTACTTGATTCCCTTCAACGCCTTTCGGGTTTC CAATTTTGCTTCTCGATTTGTGCTGATCTTGATTTCTGGTTACCCTAAATTTGTTGATTTCGATTTGTATTTGTATTTGT CATTTCAATTCACGGGATTGTTTTCATTTTTTTTAGGGGTTGTGAAAGATGTCGTTTTTGTTTGCTAAGACCAGTTATTA GCGATCCTATCATAGGTTCTTAGTTTTGGGTTTCTTAATATTATTCTGGGTTTTTGTTATTCAGTGAAAATAATTCGGGA TTGAAGTTTTCTGCTTTTTTTTTTTCGCTGAAAATTGGGGATTTTTTTATTAGTTTTGGCCTCACTAGATTGGGGAATTG TTGTGTGTAGCATTTAGGATCTGTATTGTGAGAATATTTGCGTTGTGTCTGAGGATTAGGTAAGTGAAATGATGTTTGAT GTGCACAATGTCTTTTTTTCATTTTTGGTTTCCATTGGTGAGCTCAAAGTGATGCATTTTCTTTGTGTTGAGAGTGTATG TTGTAGCTTCTAATGCTGAGTGCGTATAACGCTGTTTGTCTGATGTTTGATGTGCTCGACTTCGGCATCCCGTATCTTTT CTAGAATGGATTTAGCGCTACGCGGTGTTATTCAACATGCTGAGTTCGGTGTTATTTAACTTGGGCTTGCCTCCTTGATA TTATTGAGTTGAACTTACACGAGTGCAAGCTTAAGAGTTCATAAAATACATGTTTACACTGGATAGCTCTTTCTTTGTTG GGTTGTTATCATGGTTGAAATCTAGTAGTAGTAAGGCTATAATATGGGGAATGAGAAGGATCAGTTTTAAATTTGGATAA CCGTGTTTCAACTTTCACTTTTCTTTTCCTCCTCCGGGTCTTCTGAATGTTTTAGCTAGGCATTTGATTGTAGCTGATTT TCTCATAAAGGAGCTTTGTCTTCCTGTTTTTAAAGAAGTTACTATGAGTTATTTGGTGGTTTCTATCTGAGTTTTAATGA GTTGAAGATGAATTGTATTGATTTTAATGAATTATATAATGGAACATGTTTATACTTTTTGGTTTCTAATGATGAAACTT TTTTTTCTCTTCATTTCTGCACAGATGAATGTGGAACGGTTGATGAAGATGGCCGGTTCTGTTCGAACCGGTGGAAAGGG TACAATGAGAAGGTATTTTTATATATCAAATTCTGCTTTTCTTCCATATCAATATTATAATTTCTAGCGATGTTAGATAC TCAAGTTTGTTTGTTCTTAAAATGATCTGGTACTACTCTCAACTGTCCATGAATGTATTAGTAGCCAATATATTGACATC AATTTTATCTTTGCTTCTGGTATTATATATTTGATAAACTGTTCAGAGGATATCCAATTGACACCTTGCACTGCTTTTGA TTTATTTGTAAAACTTAAGTTTAAGTTTTGTTAAATTATTACTTTGAGGTGTTATTAATCAACTGCTTTTTTGCTGTAAT TGGTTTTTAGTTGAGTAAGGAACCTATACCATTTTTTCTTGTTTATTCAACTGATAATTGCATCTGATGAGTTGATTACT TCTTCATGATATTTTTTTTTAATTTTAGGAAGAAGAAGGCAGTCCACAAGACAACTACTACCGATGACAAAAGGCTCCAA AGCACCTTGAAGAGAATTGGGGTAAATGCTATCCCTGCAATTGAGGAAGTCAATATCTTCAAAGATGATGTAGTTATCCA GTTTCTAAACCCCAAAGGTATTAATATTCACTAATGATATGTGGAGTATATATTTTATTGTAATTTTCTAATTTGACTAA CCGTTGAACATGGAATCTTTTACAGTACAAGCATCTATTGCTGCCAATACTTGGGTTGTTAGTGGCTCTCCTCAAACAAA GAGTAAGCTTACATATTTTTATTTATCTCTGTGACATACTTTCTTACTTATGCTATTTGCTCTAGTGGGTTACACCAATT CTTAACATGTTTTAGATAGCATTGCCAACATCTTTGAGTATTGTGAAAGCGTATGTGTTATCAATAGTTGTCTACGTCAA TTTTCAAGTGTTTAATGTACATATGGAAATATGTAGACCTTTATTATAATTTGGATATCCATGACATTGTTCCCCCCCGT ACAGAGTGTAGGACTAAGACTTCACAGCAAAGTCCCATTTGAATTTGAACTGAATTAATCCTTGGTTGGCATTTCACTTA ACCAATTTTCTCTTTTTGCAGAGTTGCAGGATATTCTCCCTAGCATCATCCAACAATTAGGTATGTGATTTGCATCTTGT CCAAACTTCAGCCTTTTCTCTTCCTTGTGTTCTTCCTTATTTGAGATTTCCGACTTTCTTAAAAATATTACAGGGCCAGA TAACTTGGAAAATCTGAAGAAGCTAGCTGAGCAATTTCAGAAGCAGGCTCCTGAAGCAGGAGCCACTGCACAAGAAGAGG ATGATGATGCAGTGCCAGATCTTGTCCCGGGGGAGACTTTTGAAACAGCTGCCGAAGAGACTAAGACAGCTGCTGAGGAG ACTAAGCCAGCTGCTGAGGAGACTAAGGCATAGAGAACTATGCCATCTTCATATATTTTTGTTGTCTTAAAAGATTATTC TCTTTAAAAAAATAGAATGTTTCAGGTGTTGCCCAATGCTCATTAAAATACTTTTTTAAATCTGCTCTTGATGATCTAAC TTAGTTTTACTACTTGACTGCACCTGAGTTTGTCTATTGTATGTGCATCATTTTATGTCGTAGTAATCAATTTTGTCCAT CTATTTTTCTCATTTGGTTTCCCTTGAAGTCTGGGAAACTCAATGTTTATGGGAATCATCAAAAGCGACCATAACATTGT CATGGTTCACATAAAGGCTCCATGGTCATGAAAGAAGGGTAATGATTTGTCATCTGAATCTTATCTGTTTGCTTTGTGGA AGGATTGCTGGCTTTTGGCATATGAGACCTCAAATAGAGATGTAACTGCAACATGCATGATATTTGTTTTTTCTTTGTCT ATTTTCTTCTATATGGGGTTTCTGTTGTAAAGCTCATAAAAAGGAATTTCAGTCATTAACTTGGGTTGACACTGGAACCC GAAGACAAGAGAGTTCGGAATAATTCACCAGTAGTTTGTGTGTTAAGGACGAGGACCCAGTTTGGTTTTGCAGCCATTGC TTTCACAAAACAGCTGAAGGTGCAACCTGTTTTGATCCCTAAGCCTTAAACTAGCTTCCAAGATCATCCAAGCATTTGAA AATTTCTATTCAAAGCTGATTTGTTTGTTATCGGGTGATAATTGCAGGTAGGCTTAAAACAGATGATGAAAAATTGATAT GTTGGCTTCTCTACCGAAGTATTGTATGTGGATATAAATCACCGACTAACTAGTCATATATAGTTGGTTTGATTCGTGAT GTCCCAAGGATTGTTAGGTGAATGTTAGATTATAACCATAAAGTTGCATCCGGATCCCGAAATTTAAATCACCTTGTAAC GAGGCTTTTATAGAAGCATTATATGTTTTTTATACATTTAAATTTGTTTGTTTCAAATATGTTTTAAATTTCCCCAATCT TTTTTTTATAGGCAAATGTTAGTTGTTAGTAAATTAGTCATCATCAGGGTTCGAACCTTTGACTTTTCACCCTTCATCTT ACCCTACTCTTATGTCCCCAAGGGTTGGTT
CDS sequence (LotjaGi3g1v0113700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGTGGAACGGTTGATGAAGATGGCCGGTTCTGTTCGAACCGGTGGAAAGGGTACAATGAGAAGGAAGAAGAAGGC AGTCCACAAGACAACTACTACCGATGACAAAAGGCTCCAAAGCACCTTGAAGAGAATTGGGGTAAATGCTATCCCTGCAA TTGAGGAAGTCAATATCTTCAAAGATGATGTAGTTATCCAGTTTCTAAACCCCAAAGTACAAGCATCTATTGCTGCCAAT ACTTGGGTTGTTAGTGGCTCTCCTCAAACAAAGAAGTTGCAGGATATTCTCCCTAGCATCATCCAACAATTAGGGCCAGA TAACTTGGAAAATCTGAAGAAGCTAGCTGAGCAATTTCAGAAGCAGGCTCCTGAAGCAGGAGCCACTGCACAAGAAGAGG ATGATGATGCAGTGCCAGATCTTGTCCCGGGGGAGACTTTTGAAACAGCTGCCGAAGAGACTAAGACAGCTGCTGAGGAG ACTAAGCCAGCTGCTGAGGAGACTAAGGCATAG
Protein sequence (LotjaGi3g1v0113700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNVERLMKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAAN TWVVSGSPQTKKLQDILPSIIQQLGPDNLENLKKLAEQFQKQAPEAGATAQEEDDDAVPDLVPGETFETAAEETKTAAEE TKPAAEETKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 160 | 160 | 1.9E-121 | – | |
| PANTHER | 1 | 160 | 160 | 1.9E-121 | ||
| ProSiteProfiles | 33 | 97 | 65 | 15.747 | ||
| SMART | 36 | 91 | 56 | 3.8E-21 | ||
| Pfam | 36 | 91 | 56 | 4.6E-19 | ||
| Gene3D | 48 | 104 | 57 | 9.1E-27 | ||
| MobiDBLite | 120 | 170 | 51 | - | – | |
| MobiDBLite | 152 | 170 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0113700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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