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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0114800 |
| Transcript ID | LotjaGi3g1v0114800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding region RNP-1 protein; TAIR: AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8WXF1|PSPC1_HUMAN Paraspeckle component 1; TrEMBL-Plants: tr|A0A0L9UJ06|A0A0L9UJ06_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0114800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14116895..14120448) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTTTCTATCTCTTCTCATCGATCCTTCTCTCTTCATCCTCTTCTTTTCTACATTTAAGCATTTCTCACATAATGAAT CTTTTCGCATTTTATAAATGCTAAACCAAGGTGAGTTGTGTATTTTCACACTTATTTAGTGAGAAACTAAATGCCCTTTA TCTAATGCTGCAGCCCCGAGGGAATCGCAACTTTTTTCTCATACAATCTCTTAGACTCTGAAACAGACCCATACTAAGTC CAAATTCATTTCACCTGAAATCGGAATCGACCCAATATAACAGAATATTTTCATAAGAGAGAAACTTTGCATGAGACACT CGTCCCTTACGCTTGCATTTGAGGAACTGCTAGGGTTTTATCACCCCGCATTTGATTTTGCTCACAGGTTCATATAAATC AATTTCCTTCATGATTCATCATATTCACATGTAGATGCTATTTTTGTATATTTTTACAATCTATCTATCTGTAAGGTGTT TGATATTATGATTCTTGAGATATATGATTGAAAATGATGTGGTCAATTTACCTTTGTGAGCGTACTTTGAATAACTAGGT TATCATTTGTATTTAAATTATTGCTTATCCGTCATTGTGATGCGTTCTTCGTTAAATAAGTGTGTTGAACTTGGTAAACG GCTCGTTTGAAATTCTATTACATAGTCTATGCATTTTGCAAATCTGGGTTCTAATGTTTGGTCTGGGTTCATTACTATGC CATTTCCTGTGAGAATTCAAGCTCTGCACCGCACCATGGTTTTGCATATTTTAAAATTTTGATTTTACACCCCACTCTAC AGATCCATATAATATAGATTTCTCATAATGGATTTGGGCTCTCCTGTGGATTGTATTGATGTGGTGGTTCACTAGTTTCT TAAACATGTACTTTAACTTGTGGTTTGTCCCTTTTGACTTCAATTGATGGGATATAGGAAGCTCGCATGACATGTCGTCC TGGTGTCCCGTTTATGGAGTTTTTTCCTGGTTTGTTTCACAAGTTGAGATATACAACTTGAAATCATGAACTGTTTGCGG CCTTGGAAAGCTAACATCAGATTGTAACTGAATTTTTCAAAAATTTAATTGCTTCTTTTGTTTGGTTCAAATGTTCATGC ATACTGGAGCCTGATTCTGCCTGTATTCACTGTTTCGGAGAACTTATTCTTTATTTTCTTTTCATTGTTATGTCTATCTT TAGAATTGTATACGTATTAATTACCCTGAGTTCCAAAATTGTCATTCTTAGGTTTCATTCACTTCAATGGGATCATCAGA AGAAGAGTTTGCTGCATTTGAACAGAAAGTTAGAAGGACAGTGTACTTCGACAACCTGTCACCACAGGTTACTGAATCTG TGATGAGAACTGCTCTTGATCAGTTTGCAACTGTCAAAAGTGTGAAGTTTATTCCCAACTACCTAGGACCAAGCCTGCCA CAGACTGCATTGGTGGAATTGGATTCTTCCAAGAAGGTCGAGGATATTGTAACAATGATAGGGCAGTATCCTTTCATGAT GTCTGGGATGCCAAGGCCTGTCAGGGCTCGGCCTGCTGTGATCGAAATGTTTGATGATCGGCCAGTAAACCCTAACAGAA AGGTGGAGTATCGTTGGCTGGAGCCTAGTGACCCAGATATGGAGGTGGCAAAACAACTTAAGAACCTTACGCGGAAACAT GCTGCAGAAATAGCACACATGCACAAGGTAAATTCTTTCCTAATCTATTTTTCGTATAGCTCTTTAAAGTTGAAACTATT ATATTCCAATAATTGCTGTGATATGCAGAGTAAGCATCTTGGAGTTGGTTTAAAAATATCTATATGAAATGAATGTTTAT TTGCTTATTTTATCCTTATGCTCATGTAATTTCAGGTTTATTTCTATGCACTTATGTTTGTTGATATTATTCTTGAATAA ATTTGTTGGATTTGTGTCAACATTGTTCTTTAACTGTAGCAGTTTACTGTAGCATGTTTATTGTAAGTGAAAATTACTGG GGAGTTTGTGGGTTCTTCCAGTGGGAAATGTGCAGTAACAATTGATTATTAATTTCTAATAGGCTGTTAACATTTATCAC TTGTTTATATGGGAAGTTAGTGTGAAATTGATATCACAGAAAGTATCAGGTACAAAACTACAAACAGGGGAAAGTCATGA TGGTAAGAATGGCATATGCATATTAAACATATAAGAAACTATGGATTTTGTGTACTTTGAGAATTTGGAAAAAGAAAAAA CTGTAAAAGCATTGCTTGTTTTCTTACCAAGTACATAGGATTGGCCTTCCATGATATGCTCTCTGTTATATTAGTTTTGT CGCTTTGATCTTTATTCTTTCAGTTTGTTATTGTAGCAATTTATTAGTTTTATTTTAAAGGAAAGGAGATATCACCACCG TGTGTAATGTCAATCGTCAATCTGTCATGCCTATGTGCACTCTATATTATCCTTTCTATGACATTGCTCCCAATGAGAGA ATGTTACTGGAAGGATACTGTCATGTATTTGAAATGCTTTTGTGGAATGGTCTAAAAGTGAACAACTGCCATAAAATGTT CATGTTTTGAAAGTAAAGATAAAGTTTTGTTCAGTCTGAAAATTGGATGCTGTTCTTAAAGAAAGAACACATAATATTAG TTATATGCAGAAATTGGAATGAGAGTACATCCTTTGTTTTTTCATTCTTGCCAAAGAACACACTTTTTTTTTGTTAAAAT GATAACATAATTTTTTTTTGCCTCATGCAAGCTATCCTAACCTGTCACTTCTAGCTCATTTTAGTGTCTTAGAACACATT TACTTTTATGAAGGACCATATTTCTGAATGAACATCTAGCCCCTTTTCTGGTGTCAAAACGACGCCCAAAGCTTTCGCCT GTTAAATCATTTGTGTGTTTATATTTGATATATACTGTCAGCGATTCTATGTCATCCTAAGTGAGTAGTGCGTGGGTTAT TTTCAGCTGCAACTACAAGAAGAAGCAAAGCTTGCGGCGCAGCAGACAGAGACGCTTAAAATGCATCACAAAAAGTTTAA AATGATAGATGGCATTATCACTGATACATCTGCCATCCGTTTAGCACGAAAGTATAATCTGAATGTTGGAGATCATTGAA GGCTTCTTTTGGATTCATTGTCTCTGCAGATAGCTTCTCTTTTCTTTTTGGTCAGGATTAGTTCATTAGGTTCTCAGTTA TCCGAAGGGACTTTAGATGCAATGAGCACCTTACCTACTTCTAAAAGTGAGATCTTTATTCTTTAGAAATTGTTTGTAAA GGTGCTATGCTATGCTACTAAAGATTTGTTGTGCCAAGCTACTACTAAAGAAACTCTTCTTGGTATGTTAATATGCTCTT CGGGATCCATTCCTATGATTTCGATTTTTTGTCATATCATTCAGGGTAGAAGTTGGAGAATTTTTTTTTAGGGCAACAGT AAATTAGATTTATCTACCTTGAGGTTTCGCTAGATGGCATTAACTCCAAATTTATTCAAATATTACACTTCATCCCATTC ATTACTAGAAATTTGCTTATTACATATGAATTTT
CDS sequence (LotjaGi3g1v0114800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATCATCAGAAGAAGAGTTTGCTGCATTTGAACAGAAAGTTAGAAGGACAGTGTACTTCGACAACCTGTCACCACA GGTTACTGAATCTGTGATGAGAACTGCTCTTGATCAGTTTGCAACTGTCAAAAGTGTGAAGTTTATTCCCAACTACCTAG GACCAAGCCTGCCACAGACTGCATTGGTGGAATTGGATTCTTCCAAGAAGGTCGAGGATATTGTAACAATGATAGGGCAG TATCCTTTCATGATGTCTGGGATGCCAAGGCCTGTCAGGGCTCGGCCTGCTGTGATCGAAATGTTTGATGATCGGCCAGT AAACCCTAACAGAAAGGTGGAGTATCGTTGGCTGGAGCCTAGTGACCCAGATATGGAGGTGGCAAAACAACTTAAGAACC TTACGCGGAAACATGCTGCAGAAATAGCACACATGCACAAGCTGCAACTACAAGAAGAAGCAAAGCTTGCGGCGCAGCAG ACAGAGACGCTTAAAATGCATCACAAAAAGTTTAAAATGATAGATGGCATTATCACTGATACATCTGCCATCCGTTTAGC ACGAAAGTATAATCTGAATGTTGGAGATCATTGA
Protein sequence (LotjaGi3g1v0114800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSEEEFAAFEQKVRRTVYFDNLSPQVTESVMRTALDQFATVKSVKFIPNYLGPSLPQTALVELDSSKKVEDIVTMIGQ YPFMMSGMPRPVRARPAVIEMFDDRPVNPNRKVEYRWLEPSDPDMEVAKQLKNLTRKHAAEIAHMHKLQLQEEAKLAAQQ TETLKMHHKKFKMIDGIITDTSAIRLARKYNLNVGDH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 197 | 194 | 3.6E-86 | – | |
| Gene3D | 6 | 113 | 108 | 8.4E-8 | ||
| SUPERFAMILY | 12 | 93 | 82 | 1.51E-8 | ||
| CDD | 19 | 84 | 66 | 5.70454E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0114800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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