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LotjaGi3g1v0122100.3

Overview

Field Value
Gene ID LotjaGi3g1v0122100
Transcript ID LotjaGi3g1v0122100.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Actin, putative; TAIR: AT3G60830.1 actin-related protein 7; Swiss-Prot: sp|Q8L4Y5|ARP7_ARATH Actin-related protein 7; TrEMBL-Plants: tr|I1MJQ3|I1MJQ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0122100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:14935136..14940259) extracted from Lotus japonicus Gifu genome v1.2.

ATGAAACGAATGGTTGATGATGGTTCAGTGAGTGATAATTCGTTGGCGGATGAGATTGCCGTTGATCCGATCGTGCGAGG GTACATTCGAGATTGGGATGCTGTTGAGGATTTGTTGCAATATGTTTTGTACACTGGCCTTGGGTGGGAATTGGGCAATG AAGGACAGATACTATTTACTGATCCACTTTGTACCCCAAAGGTTTTGACTTGACTTGAGGAGTTTCTGTTCAATAGTCAT TTAAAATTAAATTTTAATGATTTTGAAATCCCAGTTTTGATGGGGTTTTTATCAGTTTTTTAGCTTATTTACTGCAATAT GCACTTGTAAACTATTTTTGTTCTGTTTGGTTGATCATGGTTTGGGCTTAATGTCATTGCTGTAAATTAAAGCTAGTGAA AATAATCCTTTTCGGTACCATTTTTTTATTTTCTTTGTTATGATTTCTAACTAGATTTAAGTCATTTAACTATCTTTACT GGAAATAACTAGTTATTTACCCAGGTTATCCAAACAGGGTCTTAATGCATGTCTGTTCCAACATTTGCCTCATTGATTAC CTAATTCTGTTATGTATTCTTTATACAGGCTGAAACTACTTTTCTGTATGTATATGGTATCTTCTAGGGAAAATTTATGT TTCCTGTTTATGATTTTATGACTTTATCCAATTGATTGATGGAAATGAAATTGGGGTAGCTAGTTGATAGTATTCTTTAA TGTGCATTGCTATACAGATTTTCTTTAACATTTATATTGTATTGTTTTCCAGGCTAATAAAGAACAGTTAGTGCAACTAT TGTTTGAAACATTCAACGTATCAGGGTTTTATGCCTCAGAACAAGCAGTGTTGTCACTATATGCTGTGGGACGTATCTCA GGCTGCACAGTTGATATTGGTTATGGAAAAATAGGTATACTTTTTTAGAGAACCAGAATTGAAGATTTGTTTGAATTGTA TGAATATGTATTACATTTAATTGATGGTTTGTTTGATTTGCTTGCTATAGTGTATGCCAAGTTGTCTGATTAGGATGTGG ATGCATGCTATCTCTGGCACATAATCATGTGATGTTGATGTAGTTAGGGCGCCACGGGTTACGAGACATATGTTGTGTGG TCGTGTTCTCTGTATTGCAATGGAGTAATTAAATAAAAATATATTAAGTTGCTTTATCATGTCTTAGTGATACAATAAAT TGCCCTATCAGCTAAGAAGAGTCAATAAAAGAGTAAGTCCTATAATTTCATCAGATAGTAAAGACTATAACCAATTTTAG ATTTGCATGGAAGGAAAGGTTAAAATCAAGGTTGTCATCTCATCAATCATAGTCTTGGATGGAGAAGTGTTTCCTAAAAA AATGATTGAAAATATAGAGGAGAGAGCATAAAGACGAAGATAAATCATGATAGCTTAGGAAATTAGATATGGGTGATAAT TACTAGTAGAACATGTAATGTAAGGTTCTTGTAGGCTTGTTGCAGGTAGAGGTATTGGAGCAGGAAATGAATACTTGTAA AATCTTTCATTTTAAATTTGACTGGTTACCTTATCTAAATGCACATTAAAAAGAGTTTAGTTCTTCCTATGGAATCAGTT TTCCGGCAAATGGATTATATAATTTTGTTATGAGTCCTAAACATTAGCTTTTCTCTATTATCCTATTCTCTCCCCAAGGG TTTCCTGTTCATTTAAAGTTAATATACTTTAATTCCATTTTCTGGTACTTTCTAATTTTATACAATAACCAAAGCCTTTT CCCATTGGGTGAGGTATGCCTCATGGATCATTTGATGCCATAAATATTAGTCCTGGTAATTTCTGTTTATCAAACTAATA TTTACAAATACAAGAATATTATTATGGTTATAGGTATTGTATGTGATTTAAAGTAATCTATACATGGTGGGAACTTGAAA GACTAATAATTCTTATATGGTTGCTTTAGATCTTGGCTTCAGATAAGCGTTCTGTTGTTAAACACTTAAGCTTCTACTAC GTTCAGTGTGTGCTATCTAAGTAGATGAACAGATGGCTGAGCCTTTTTCTTTCAATGTGAATTTGCTCTTGATCTTACTA GTTCTTATGTGCCTCTTGATCTTTTTTGCCTTTTGTAATTAGATATTGCTCCGGTAATTGAGGGTGCTGTCAACCACATT GCCTCGAGAAGATTTGAGTTTGGAGGTACTGATCTCACTAATTTTCTGGCACAAGAACTTGGCAAATCCAATCCGCTAGT GAATATCAGCATGTCTGATGTTGAGAAAATAAAACAGCAATACTCATGTTGCGCTGAAGATGATTTAGCTTATCAGAAGA CCCAAGATTCTTGCCCTGCGGAGACACATACCCTTCCTGATGGACAGGTCTGCCTTTTTGTTTTTCAATCTATTAGTTTT GACTTAATATGATACTTGTTCTTGATTTTTTTGTTTGGTCCGTTCTTCCCTCAAGTTTGTTGATGTTCTACTGTAAATGT GTGAATTAACACTGGTTATGGCAGTGGGAAGGAGACAAAAATAAAAGGGATGGTGGGTTGAAATTGAAAGTCAATAAGGA CTAAGGTGAGACTAAGCAGGCTTACTTTATATTGCTCCTGATTTAAACAATGCTTATGGACAGAAGAGAGATGGTTGGCA TTTGTTACCTTTGGTTGAGTCATTAACCAGTTATCCCAAAAACTTAGCTATTTGCTAAATGACACATGAATGGTTTTAAA TCATATCTCTAACATGTCACAAGAGCCCATTGGGCTTGAAGCGTGTACAATGCACAAGCTCACCTACTTATGGTGAAATT CAACTTTTAATTATAATAATTGGTGTCAACAAGGATCAAACTCTAGATCACTCGGTTATAGAGACTCTGATTCCATTTCA AGAAGCAACTATCCCAAAATCTTGAGCTGTTGGGTGAATACACATGAATGGTTCTGTATTATATTTCTAACAGGTTGCAC TATGTTCTAATTCCTTAGCATTGTCAAGTCTTATTTTTTTGCCTGTTCATGTGGAACTTTCTTTCAGTGTGATGTATGAA CTGAATTTTCGATGACATGCTTTACTTGTTCTCTACAAGCTTTGTCAGAAAATTTCATCTTCCAGTAGGAGGCGGTTTAG CAATTCGTTCCTCAAATGGTGTTGAAGCTAGCTACATATGTTTTCATTGAAGGAGGCTTTAGAATATAGGGTCTTAGTAA TGGGCATTTATTTATCGGATGTCCCTGAAGGGACTCATTTATTTATACGTTCTTAAAATTAGATTTAGTTGACTTAAGTT ATCAAAGCTTCTATTCTAGTTGGTTGAAGTCGAAAGACAATGTTGCTCATCATCATTTCACATCGAGAAGAGGAGATTAT CATTGAAATGAAATAAAGACTACTTCAGGTGTAAGTCCGTTTCTTTTTTAGATAAAAGTAATTCAATATGGATGCATAAT TTGTATCAGTTCGGTAGAGGCATGGAGACTTGAAGAGTTCTGATAGATTTGTCACCGTACCCATTCCAGAGGAAGATTTG ATTTATGAGACTTCAAACATCAACAGTTTTGTTTGACCAATTACAGCAAGTTATAAGTTTCCTGCATGTTTAACGATATG ATCATACAGATGGTCAGAAAGGCCATGGACCTTTAAGTTTTGATTGCCGTTCCCATGATATAATATTCTATCTTAACCTA GAGCTCTCACATTTTAAAGTTGGATCTCTATTATTTTATGACTTGATCTAGCAATTGAACTTTATGTAGGTGATCACAAT TGGAAGAGAAAGATATACTGTCGGTGAAGCTTTATTCCGTCCATCTCTATTGGGTATAGAGGCTCATGGCATTGTTGAGC AGCTTGTCCGTACTATTTCTAGTGTGTCATCTGATAATCATCGGCAACTTCTGGAGAATACCGTGGTTTGTGGTGGCACT TCTTCAATGACTGGTAAATTGTTAGTTTTGGTGAATCTAGTACAAGATTGATCTGAGTTTCTTCTTATTTGTATTTGAAG CACATTAGACCGATCTTTTGTCTATACATTCAAATTTTTACTAAATGGAATCACAAAACTTTCTACGCAGTATAAGGGAT CCTATGTTTCTTTGTTAAATGGGAGTGCAGTAGAACTACATATTGAGACAATATATTTCATATTGTCTAATCTGGATGTA AACTTACAAGGCTATTAACGTAATTTTCTTAAACTTAGTCCTCCTTATTTGTTACAAACGATGCCCAATTTGCATATGAA GTTTTTCCTTTTTCCAATTCAATCTATATGACTTTGAAGTTAGAATATTGTGGTGATCTGTGTGGTAATGTTTGGACTTC AAAGATAATTTAATGGAGCTATATGGCACAGGGTTCAAGTTCAACTTAGAAGCCTGGTCCAAGTGATATGAATCACATCT CAGATTCACAAAATTTACTATTCTGCTGTCAATGATTTCGCCGCATTAGTTGCATATGAAATTTGGGTCTATTCTCATTA GCAAGCAAATGCCCGTTGTGTCATATGTCAATTTATTCTGCATGCTCATTACAAAATGAGGGTCATCTCTCAGCAATCTG GCCTCTTTTTATGAATTTTTTGTTTTACTTGTGCCTTCTGACATGCTAATCTTGCTTCTACCTGCAGGTTTTGAAGAGAG GTTTCAGAAGGAATCTTTCCTAAGTTCATCTGCTGTTCGACCTACCCTAGTCAAGGTAATTTGCTTGTAAAGTAAATAAT GTAAGACGTCTCATAGGCATTATAAATGTTAACTTGCCGACGCTACCTATCTAAATAGTTGCACAGTTTGGAGGTTAATA ATTCTTGAAATCTATTGCATATCGTAATCAAATACAGGATCGAAATCTCTGTCATCCATTTTCTTCTCTGATTATAGTTC ATTGTTGTCATATATTTCTCTGGACATAAACTTTATCGTCATTCATGTTCTAATTTGTTTCTGCTTGTGGGTAATGTGCG ACTTAATGCAGCCTCCAGAATACATGCCAGAAAATTTAACTAAGTATTCTGCTTGGGTGGGAGGTGCCATACTTGCCAAA GTAGTTTTTCCTCAAAACCAGCATGTAACTAAAGGGGACTATGATGAAAATGGACCTTCCATTGTGCATAAGAAATGCTT CTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0122100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAACGAATGGTTGATGATGGTTCAGTGAGTGATAATTCGTTGGCGGATGAGATTGCCGTTGATCCGATCGTGCGAGG GTACATTCGAGATTGGGATGCTGTTGAGGATTTGTTGCAATATGTTTTGTACACTGGCCTTGGGTGGGAATTGGGCAATG AAGGACAGATACTATTTACTGATCCACTTTGTACCCCAAAGGCTAATAAAGAACAGTTAGTGCAACTATTGTTTGAAACA TTCAACGTATCAGGGTTTTATGCCTCAGAACAAGCAGTGTTGTCACTATATGCTGTGGGACGTATCTCAGGCTGCACAGT TGATATTGGTTATGGAAAAATAGATATTGCTCCGGTAATTGAGGGTGCTGTCAACCACATTGCCTCGAGAAGATTTGAGT TTGGAGGTACTGATCTCACTAATTTTCTGGCACAAGAACTTGGCAAATCCAATCCGCTAGTGAATATCAGCATGTCTGAT GTTGAGAAAATAAAACAGCAATACTCATGTTGCGCTGAAGATGATTTAGCTTATCAGAAGACCCAAGATTCTTGCCCTGC GGAGACACATACCCTTCCTGATGGACAGGTGATCACAATTGGAAGAGAAAGATATACTGTCGGTGAAGCTTTATTCCGTC CATCTCTATTGGGTATAGAGGCTCATGGCATTGTTGAGCAGCTTGTCCGTACTATTTCTAGTGTGTCATCTGATAATCAT CGGCAACTTCTGGAGAATACCGTGGTTTGTGGTGGCACTTCTTCAATGACTGGTTTTGAAGAGAGGTTTCAGAAGGAATC TTTCCTAAGTTCATCTGCTGTTCGACCTACCCTAGTCAAGCCTCCAGAATACATGCCAGAAAATTTAACTAAGTATTCTG CTTGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAACCAGCATGTAACTAAAGGGGACTATGATGAAAAT GGACCTTCCATTGTGCATAAGAAATGCTTCTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0122100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKRMVDDGSVSDNSLADEIAVDPIVRGYIRDWDAVEDLLQYVLYTGLGWELGNEGQILFTDPLCTPKANKEQLVQLLFET FNVSGFYASEQAVLSLYAVGRISGCTVDIGYGKIDIAPVIEGAVNHIASRRFEFGGTDLTNFLAQELGKSNPLVNISMSD VEKIKQQYSCCAEDDLAYQKTQDSCPAETHTLPDGQVITIGRERYTVGEALFRPSLLGIEAHGIVEQLVRTISSVSSDNH RQLLENTVVCGGTSSMTGFEERFQKESFLSSSAVRPTLVKPPEYMPENLTKYSAWVGGAILAKVVFPQNQHVTKGDYDEN GPSIVHKKCF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11937:SF362
2 325 324 2.2E-112 –
SMART
SM00268
2 330 329 1.9E-48
IPR004000
PANTHER
PTHR11937
2 325 324 2.2E-112
IPR004000
PRINTS
PR00190
14 36 23 7.8E-15
IPR004000
SUPERFAMILY
SSF53067
19 107 89 9.06E-22
IPR043129
Pfam
PF00022
20 330 311 7.1E-64
IPR004000
Gene3D
G3DSA:3.30.420.40
21 320 300 2.1E-87 –
CDD
cd00012
26 135 110 4.01302E-12 –
PRINTS
PR00190
69 82 14 7.8E-15
IPR004000
Gene3D
G3DSA:3.30.420.40
91 283 193 2.1E-87 –
PRINTS
PR00190
94 113 20 7.8E-15
IPR004000
SUPERFAMILY
SSF53067
100 330 231 5.7E-56
IPR043129
Gene3D
G3DSA:3.90.640.10
135 219 85 2.1E-87 –
PRINTS
PR00190
186 202 17 7.8E-15
IPR004000

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0122100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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