Transcript — View — Lotus Base

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LotjaGi3g1v0129600.3

Overview

Field	Value
Gene ID	LotjaGi3g1v0129600
Transcript ID	LotjaGi3g1v0129600.3
Related isoforms 3	LotjaGi3g1v0129600.1 LotjaGi3g1v0129600.2 LotjaGi3g1v0129600.4
Lotus japonicus genome version	Gifu v1.2
Description	carboxyl-terminal peptidase, putative (DUF239); TAIR: AT1G55360.1 tRNA-splicing ligase (DUF239); Swiss-Prot: sp\|A2QAS2\|MNS1B_ASPNC Probable mannosyl-oligosaccharide alpha-1,2-mannosidase 1B; TrEMBL-Plants: tr\|A0A0L9UIR2\|A0A0L9UIR2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0129600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:15936998..15939961) extracted from Lotus japonicus Gifu genome v1.2.

GTGTACTTTGTAGTGATGCTACTCCTGGGTTTGCTAAATATTGTGATTAATTTACTTTAATTTTGTGATTTTCCTTAAGC AAAGTTCATCTTTTTGCGAGTTTCTAACTTTGTCACATTTGTGTTGTGAAAATGAAAACAGAGTCCTGATGGAGATATTA TCGACTGTGTCCATCTCTCACACCAACCAGCTTTTGATCATCCTGATCTCAAAAGTCACAAGATTCAGGTGAATTACTTA ACTTTCTCACCAAATGCTTCACAATTCAAAATTCCTAACCTTTATTGGCTTTACTTTTTCCTTAATTTAATAAACTCACG CGTTTGTGATGCAGATGAGGCCAAATTTCCACCCAGAAGGGGTTACTTTTGGAGAAAGCAAAATATCTTCAAATTCCAAG CCTTTAACTCAGCTATGGCAGAAAAATGGGAGGTGCCCAGAAGGAACAATTCCTATCAGAAGAACCAGGAAAGATGATGT ATTGAGAGCAAGCTCAATTCAGCAATTTGGAAAGAAAAAGCAAAGGAGTGTCCCTCAGCCAAAACCTGCAAAACCTCTAC CTGACATACTTAGTCAGAGTGGGCACCAGGTACTGCCACTGCCATTGTACTGATAATAATGCAGCAGCAACAAAAGTCCA AGTTACTATTAATTTCTTAGAATACACCTTCATTTCTCATTTATTTTATTTCTATGGCCAATAAAAGGAAAGAAGAAAAT GTTGTGTACTTCCTATTAGGTCAATTTTTTAATGTGAAAGAAAAAACAGTAGTATAAGAGCAACATATCATCAATTTTAT TTATTTATTTATTTATTATTGGACATAATTCATGAGAGGATAAAGAGTCAGAATTAAACCTTCCGCTGTGTGCGGAGTCT CGGAAAGGATCAAACCACTTGATCGTCTTACCAAGATTTTTACACAAGAGGTTGTTTTTAGGACTTAAACGCGTGATCTC AGTCACATGAAAACAACTTTTTACTGGTGTGTCAAGCCTCCCCTTCTTAATTTATGAGAGGTTATTATGTCATTATTTGA TCCTTGGATCAGTCTAAATGATCTTAGCTTGAGGAAAAAGACTTTGGTTGTTGTATTTCTGCTGATTTTATTTATTTTTC TTTGTTCCTTTGGTCTTTTTGGAGCACTTAGCATGCAATAGCATATGTGGAGGGAGATAAATACTATGGAGCCAAGGCAA CCATAAACGTTTGGGAGCCAAAAATTCAACAACCCAATGAATTCAGCTTGTCTCAAATTTGGATTCTGGCTGGTGCATTT GGTCAAGATCTCAACAGCATTGAAGCTGGTTGGCAGGTATTATTCAAAGTTCTTTTTCTAATATTTTTATTGTCATCTTC TATCTTTAAATATTTTGTCAAATTCAGCAACATCTTAAAGATATGATTTATCACGTTCTACCAATTTCCTGTTTCTGTCT TTTCTACTCTGGTTATTAGGTCAGTCCAGATTTGTATGGAGACAATAACACTCGACTCTTCACTTATTGGACAGTGAGTA GTACCCAATTCAACCACCAACCTTTGTTCCCTCTTCTAATTATTCTCTAATTTATTATTCATTTCATGATAATGTTTCAT TTTCCTGACAGAGTGATGCATATCAAGCCACTGGTTGTTATAATCTTCTTTGTTCTGGCTTTATTCAAATTAACAATGAT ATAGCACTGGGAGCAAGCATCTCTCCACTTTCTAACTATGGATCTTCCCAATATGATATAAGCATCCTGGTCTGGAAGGT ACGTTTGTTTTCTCTTTTTATAATATTTTCTTTGGTTATTGGACATTATGCAAAGATAATATGTCCCGCACTTGTCAAAC ACTAGCATTATACTAATGAAATTGTTCTGTACAGACACACTATTTAATTGTACATCAAAGAATCCCTGACACATAATTCA TTTATATCTCAATGATAGATGTATTGAGTGAATGGTTAATTAGGTCTAAAGCAAGTTAGAGTCTCTGGAAGAAGAAAATA CATTCGAAAGTCCTTGAATGTATTAAAAATTAGTCAAGTTAGTCGTACTGAGGTTTTAGTTGACGAAATATGACTCTGTA TGAACAACTTGACTGACTTTTTACACATTCGTTTACTTTTAAAAGTATTTCTTTCTTCTAAGGACTAACTTGTCAGCAGA AAAATATTTTGGGGACCAAGATGGTCATACGGTCCTGATGTTTGAACACTAGCGAGATTGACATTTAATGGACATATGAG TTTTCTGATAGTTTTGGATCGCTTGTAATGTGTATTGCCACAATAACAATTGGCGACAACTGATTCCAATATTTCAATAA CTAAAATCGGGAATGTAACTTTATTAAATACATTCAAGAATTTAGTTTTCATAATCTATTTTCAAAAATAAATTTCTAGA ATTAGTCCTCGATGATGATTTTTTAACTTTACACATTACGGGTGGTTTTTTACCGCTATAACCTTGATATGTCAAAAGTG TGCGGGGGTTCACAAATCATTTCCGATCTAGACATATATTGGTCCCTGAATTTAATATAGAACAATGCCACCTGATGTTG TCTATTGGAAAAAAACTAATGTGTAGGACCCAAATGAGGGCAATTGGTGGATGCAATTTGGGAATCAGCATGTTCTAGGG TACTGGCCAGCTCCTCTATTCTCGTACCTCACTGACAGTGCCTCAATGATTGAATGGGGAGGAGAAGTTGTGAACTCTGA ATCTGATGGACAACACACCTCAACTCAAATGGGTAGTGGCCATTTCCCTGAGGAAGGTTTTGGCAAAGCTAGTTACTTCA AGAACATTCAAATAGTTGATGGTAACAACAAGTTTAGAGCTCCCAAGGATCTTGGCACTTACACTGAGCAAAATGGTTGC TATAATGTTAAAACTGGGAATGCAGGGGATTGGGGTAACTACTTCTATTATGGTGGTCCTGGTAGAAACCCCAATTGCCC TTAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0129600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGCCAAATTTCCACCCAGAAGGGGTTACTTTTGGAGAAAGCAAAATATCTTCAAATTCCAAGCCTTTAACTCAGCT ATGGCAGAAAAATGGGAGGTGCCCAGAAGGAACAATTCCTATCAGAAGAACCAGGAAAGATGATGTATTGAGAGCAAGCT CAATTCAGCAATTTGGAAAGAAAAAGCAAAGGAGTGTCCCTCAGCCAAAACCTGCAAAACCTCTACCTGACATACTTAGT CAGAGTGGGCACCAGCATGCAATAGCATATGTGGAGGGAGATAAATACTATGGAGCCAAGGCAACCATAAACGTTTGGGA GCCAAAAATTCAACAACCCAATGAATTCAGCTTGTCTCAAATTTGGATTCTGGCTGGTGCATTTGGTCAAGATCTCAACA GCATTGAAGCTGGTTGGCAGGTCAGTCCAGATTTGTATGGAGACAATAACACTCGACTCTTCACTTATTGGACAAGTGAT GCATATCAAGCCACTGGTTGTTATAATCTTCTTTGTTCTGGCTTTATTCAAATTAACAATGATATAGCACTGGGAGCAAG CATCTCTCCACTTTCTAACTATGGATCTTCCCAATATGATATAAGCATCCTGGTCTGGAAGGACCCAAATGAGGGCAATT GGTGGATGCAATTTGGGAATCAGCATGTTCTAGGGTACTGGCCAGCTCCTCTATTCTCGTACCTCACTGACAGTGCCTCA ATGATTGAATGGGGAGGAGAAGTTGTGAACTCTGAATCTGATGGACAACACACCTCAACTCAAATGGGTAGTGGCCATTT CCCTGAGGAAGGTTTTGGCAAAGCTAGTTACTTCAAGAACATTCAAATAGTTGATGGTAACAACAAGTTTAGAGCTCCCA AGGATCTTGGCACTTACACTGAGCAAAATGGTTGCTATAATGTTAAAACTGGGAATGCAGGGGATTGGGGTAACTACTTC TATTATGGTGGTCCTGGTAGAAACCCCAATTGCCCTTAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0129600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRPNFHPEGVTFGESKISSNSKPLTQLWQKNGRCPEGTIPIRRTRKDDVLRASSIQQFGKKKQRSVPQPKPAKPLPDILS QSGHQHAIAYVEGDKYYGAKATINVWEPKIQQPNEFSLSQIWILAGAFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSD AYQATGCYNLLCSGFIQINNDIALGASISPLSNYGSSQYDISILVWKDPNEGNWWMQFGNQHVLGYWPAPLFSYLTDSAS MIEWGGEVVNSESDGQHTSTQMGSGHFPEEGFGKASYFKNIQIVDGNNKFRAPKDLGTYTEQNGCYNVKTGNAGDWGNYF YYGGPGRNPNCP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31589:SF58 View details on PTHR31589:SF58 Search for proteins/transripts with this domain View external data on PTHR31589:SF58	1	332	332	7.5E-227	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	78	78	-	–
PANTHER	PTHR31589 View details on PTHR31589 Search for proteins/transripts with this domain View external data on PTHR31589	1	332	332	7.5E-227	–
Pfam	PF14365 View details on PF14365 Search for proteins/transripts with this domain View external data on PF14365	1	90	90	8.3E-23	IPR025521 Show description in modal box View details on IPR025521 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	13	32	20	-	–
Pfam	PF03080 View details on PF03080 Search for proteins/transripts with this domain View external data on PF03080	103	325	223	3.9E-90	IPR004314 Show description in modal box View details on IPR004314 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.90.1320.10 View details on G3DSA:3.90.1320.10 Search for proteins/transripts with this domain View external data on G3DSA:3.90.1320.10	113	179	67	2.2E-5	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0129600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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