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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0129600 |
Transcript ID | LotjaGi3g1v0129600.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | carboxyl-terminal peptidase, putative (DUF239); TAIR: AT1G55360.1 tRNA-splicing ligase (DUF239); Swiss-Prot: sp|A2QAS2|MNS1B_ASPNC Probable mannosyl-oligosaccharide alpha-1,2-mannosidase 1B; TrEMBL-Plants: tr|A0A0L9UIR2|A0A0L9UIR2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0129600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:15936998..15940597) extracted from Lotus japonicus Gifu genome v1.2.
CGAATAGTTGGCTGGAGAAGATTGTGCTCTGCTTTTGTTTCTTGTTGGTTTTGGTGGTGCCTTTGACTTGTGCTGGCAGA GCCACCCTGAGCTCCGCCGCCGCTGGCGGCGGTGGAAGTAGTTGTAGTAGTAGTTCAAGTCAGAAGCTGGATGTTCAGAA GCACTTGAAGAACTTGAACAGGCCTCCAGTGAAGTCCATCAAGGTAGAGAAGAGAGAATTCTCTTTCTTTCTTTCTCCAT GTCTAGCCTTTTTCTTAGCTTTTTCCTTTTATCTCTTTCTATTCCTCCTTCTACTTTTTTCATTGATTGTGAAACTGTTG TTTCTAATTGGGATTTGGAACTGAGAAGAACCTTTTTGGCCTGAAAGGAACTTTAATTTTGAATGCCTTGTCTGTTTCAC TTGGGAGTTTCTGTTAGTCTCTTTCATTTGGATAATTGAGAATCTGCTATTGTTCTTGTTCTTGGTGCCAGAACATAATC CTAGTAATTTTTTTTTTAAAATCCTTCTATAATTGATTATAAAACCAAAATCAATTTATAAAACCAAAATCAATTATGGT GAAAAGTTTTTATGGGCAGCTTCTGGGTGTCAGAATCGATTATAAAGAAAGGGAAGCTGATTCAAACATGCTATTAGTGT ACTTTGTAGTGATGCTACTCCTGGGTTTGCTAAATATTGTGATTAATTTACTTTAATTTTGTGATTTTCCTTAAGCAAAG TTCATCTTTTTGCGAGTTTCTAACTTTGTCACATTTGTGTTGTGAAAATGAAAACAGAGTCCTGATGGAGATATTATCGA CTGTGTCCATCTCTCACACCAACCAGCTTTTGATCATCCTGATCTCAAAAGTCACAAGATTCAGGTGAATTACTTAACTT TCTCACCAAATGCTTCACAATTCAAAATTCCTAACCTTTATTGGCTTTACTTTTTCCTTAATTTAATAAACTCACGCGTT TGTGATGCAGATGAGGCCAAATTTCCACCCAGAAGGGGTTACTTTTGGAGAAAGCAAAATATCTTCAAATTCCAAGCCTT TAACTCAGCTATGGCAGAAAAATGGGAGGTGCCCAGAAGGAACAATTCCTATCAGAAGAACCAGGAAAGATGATGTATTG AGAGCAAGCTCAATTCAGCAATTTGGAAAGAAAAAGCAAAGGAGTGTCCCTCAGCCAAAACCTGCAAAACCTCTACCTGA CATACTTAGTCAGAGTGGGCACCAGGTACTGCCACTGCCATTGTACTGATAATAATGCAGCAGCAACAAAAGTCCAAGTT ACTATTAATTTCTTAGAATACACCTTCATTTCTCATTTATTTTATTTCTATGGCCAATAAAAGGAAAGAAGAAAATGTTG TGTACTTCCTATTAGGTCAATTTTTTAATGTGAAAGAAAAAACAGTAGTATAAGAGCAACATATCATCAATTTTATTTAT TTATTTATTTATTATTGGACATAATTCATGAGAGGATAAAGAGTCAGAATTAAACCTTCCGCTGTGTGCGGAGTCTCGGA AAGGATCAAACCACTTGATCGTCTTACCAAGATTTTTACACAAGAGGTTGTTTTTAGGACTTAAACGCGTGATCTCAGTC ACATGAAAACAACTTTTTACTGGTGTGTCAAGCCTCCCCTTCTTAATTTATGAGAGGTTATTATGTCATTATTTGATCCT TGGATCAGTCTAAATGATCTTAGCTTGAGGAAAAAGACTTTGGTTGTTGTATTTCTGCTGATTTTATTTATTTTTCTTTG TTCCTTTGGTCTTTTTGGAGCACTTAGCATGCAATAGCATATGTGGAGGGAGATAAATACTATGGAGCCAAGGCAACCAT AAACGTTTGGGAGCCAAAAATTCAACAACCCAATGAATTCAGCTTGTCTCAAATTTGGATTCTGGCTGGTGCATTTGGTC AAGATCTCAACAGCATTGAAGCTGGTTGGCAGGTATTATTCAAAGTTCTTTTTCTAATATTTTTATTGTCATCTTCTATC TTTAAATATTTTGTCAAATTCAGCAACATCTTAAAGATATGATTTATCACGTTCTACCAATTTCCTGTTTCTGTCTTTTC TACTCTGGTTATTAGGTCAGTCCAGATTTGTATGGAGACAATAACACTCGACTCTTCACTTATTGGACAGTGAGTAGTAC CCAATTCAACCACCAACCTTTGTTCCCTCTTCTAATTATTCTCTAATTTATTATTCATTTCATGATAATGTTTCATTTTC CTGACAGAGTGATGCATATCAAGCCACTGGTTGTTATAATCTTCTTTGTTCTGGCTTTATTCAAATTAACAATGATATAG CACTGGGAGCAAGCATCTCTCCACTTTCTAACTATGGATCTTCCCAATATGATATAAGCATCCTGGTCTGGAAGGTACGT TTGTTTTCTCTTTTTATAATATTTTCTTTGGTTATTGGACATTATGCAAAGATAATATGTCCCGCACTTGTCAAACACTA GCATTATACTAATGAAATTGTTCTGTACAGACACACTATTTAATTGTACATCAAAGAATCCCTGACACATAATTCATTTA TATCTCAATGATAGATGTATTGAGTGAATGGTTAATTAGGTCTAAAGCAAGTTAGAGTCTCTGGAAGAAGAAAATACATT CGAAAGTCCTTGAATGTATTAAAAATTAGTCAAGTTAGTCGTACTGAGGTTTTAGTTGACGAAATATGACTCTGTATGAA CAACTTGACTGACTTTTTACACATTCGTTTACTTTTAAAAGTATTTCTTTCTTCTAAGGACTAACTTGTCAGCAGAAAAA TATTTTGGGGACCAAGATGGTCATACGGTCCTGATGTTTGAACACTAGCGAGATTGACATTTAATGGACATATGAGTTTT CTGATAGTTTTGGATCGCTTGTAATGTGTATTGCCACAATAACAATTGGCGACAACTGATTCCAATATTTCAATAACTAA AATCGGGAATGTAACTTTATTAAATACATTCAAGAATTTAGTTTTCATAATCTATTTTCAAAAATAAATTTCTAGAATTA GTCCTCGATGATGATTTTTTAACTTTACACATTACGGGTGGTTTTTTACCGCTATAACCTTGATATGTCAAAAGTGTGCG GGGGTTCACAAATCATTTCCGATCTAGACATATATTGGTCCCTGAATTTAATATAGAACAATGCCACCTGATGTTGTCTA TTGGAAAAAAACTAATGTGTAGGACCCAAATGAGGGCAATTGGTGGATGCAATTTGGGAATCAGCATGTTCTAGGGTACT GGCCAGCTCCTCTATTCTCGTACCTCACTGACAGTGCCTCAATGATTGAATGGGGAGGAGAAGTTGTGAACTCTGAATCT GATGGACAACACACCTCAACTCAAATGGGTAGTGGCCATTTCCCTGAGGAAGGTTTTGGCAAAGCTAGTTACTTCAAGAA CATTCAAATAGTTGATGGTAACAACAAGTTTAGAGCTCCCAAGGATCTTGGCACTTACACTGAGCAAAATGGTTGCTATA ATGTTAAAACTGGGAATGCAGGGGATTGGGGTAACTACTTCTATTATGGTGGTCCTGGTAGAAACCCCAATTGCCCTTAA
CDS sequence (LotjaGi3g1v0129600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCCAAATTTCCACCCAGAAGGGGTTACTTTTGGAGAAAGCAAAATATCTTCAAATTCCAAGCCTTTAACTCAGCT ATGGCAGAAAAATGGGAGGTGCCCAGAAGGAACAATTCCTATCAGAAGAACCAGGAAAGATGATGTATTGAGAGCAAGCT CAATTCAGCAATTTGGAAAGAAAAAGCAAAGGAGTGTCCCTCAGCCAAAACCTGCAAAACCTCTACCTGACATACTTAGT CAGAGTGGGCACCAGCATGCAATAGCATATGTGGAGGGAGATAAATACTATGGAGCCAAGGCAACCATAAACGTTTGGGA GCCAAAAATTCAACAACCCAATGAATTCAGCTTGTCTCAAATTTGGATTCTGGCTGGTGCATTTGGTCAAGATCTCAACA GCATTGAAGCTGGTTGGCAGGTCAGTCCAGATTTGTATGGAGACAATAACACTCGACTCTTCACTTATTGGACAAGTGAT GCATATCAAGCCACTGGTTGTTATAATCTTCTTTGTTCTGGCTTTATTCAAATTAACAATGATATAGCACTGGGAGCAAG CATCTCTCCACTTTCTAACTATGGATCTTCCCAATATGATATAAGCATCCTGGTCTGGAAGGACCCAAATGAGGGCAATT GGTGGATGCAATTTGGGAATCAGCATGTTCTAGGGTACTGGCCAGCTCCTCTATTCTCGTACCTCACTGACAGTGCCTCA ATGATTGAATGGGGAGGAGAAGTTGTGAACTCTGAATCTGATGGACAACACACCTCAACTCAAATGGGTAGTGGCCATTT CCCTGAGGAAGGTTTTGGCAAAGCTAGTTACTTCAAGAACATTCAAATAGTTGATGGTAACAACAAGTTTAGAGCTCCCA AGGATCTTGGCACTTACACTGAGCAAAATGGTTGCTATAATGTTAAAACTGGGAATGCAGGGGATTGGGGTAACTACTTC TATTATGGTGGTCCTGGTAGAAACCCCAATTGCCCTTAA
Protein sequence (LotjaGi3g1v0129600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPNFHPEGVTFGESKISSNSKPLTQLWQKNGRCPEGTIPIRRTRKDDVLRASSIQQFGKKKQRSVPQPKPAKPLPDILS QSGHQHAIAYVEGDKYYGAKATINVWEPKIQQPNEFSLSQIWILAGAFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSD AYQATGCYNLLCSGFIQINNDIALGASISPLSNYGSSQYDISILVWKDPNEGNWWMQFGNQHVLGYWPAPLFSYLTDSAS MIEWGGEVVNSESDGQHTSTQMGSGHFPEEGFGKASYFKNIQIVDGNNKFRAPKDLGTYTEQNGCYNVKTGNAGDWGNYF YYGGPGRNPNCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 332 | 332 | 7.5E-227 | – | |
MobiDBLite | 1 | 78 | 78 | - | – | |
PANTHER | 1 | 332 | 332 | 7.5E-227 | – | |
Pfam | 1 | 90 | 90 | 8.3E-23 | ||
MobiDBLite | 13 | 32 | 20 | - | – | |
Pfam | 103 | 325 | 223 | 3.9E-90 | ||
Gene3D | 113 | 179 | 67 | 2.2E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0129600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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